Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.5e-151 538.9 296 100.0
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 5.5e-135 484.6 296 86.1
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 5.2e-133 478.0 296 88.5
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 2.6e-132 475.7 298 87.2
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 4.4e-132 474.9 296 81.4
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 9.8e-132 473.8 296 82.8
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 9.8e-132 473.8 296 89.5
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 6.3e-131 471.1 297 85.2
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 1.4e-130 469.9 304 85.9
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.8e-130 469.5 299 84.6
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.4e-130 469.2 302 84.8
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 4.1e-130 468.4 302 82.1
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 1.6e-129 466.5 298 85.2
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 2.7e-129 465.7 296 81.1
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 1.0e-128 463.8 304 81.2
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 1.7e-128 463.0 304 78.3
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 1.7e-128 463.0 300 80.0
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 2.3e-128 462.6 304 80.9
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 2.9e-128 462.2 300 81.3
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 3.8e-128 461.8 304 81.2
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 3.8e-128 461.8 304 81.2
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 5.0e-128 461.5 293 81.9
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.9e-127 459.5 297 79.1
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.9e-127 459.5 296 80.7
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.2e-126 456.8 304 80.3
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 1.6e-126 456.4 302 77.8
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 1.6e-126 456.4 300 84.3
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 1.6e-126 456.4 304 80.6
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 2.8e-126 455.7 302 80.8
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 2.8e-126 455.7 304 82.2
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 4.7e-126 454.9 304 79.9
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 8.0e-126 454.1 299 79.9
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 1.0e-125 453.8 301 83.1
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 1.4e-125 453.4 300 80.0
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 2.3e-125 452.6 302 81.8
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 2.3e-125 452.6 300 83.3
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 3.0e-125 452.2 300 80.0
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 5.2e-125 451.4 301 79.4
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 2.6e-124 449.1 300 78.7
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 3.4e-124 448.7 301 78.7
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 3.4e-124 448.7 296 78.4
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 4.4e-124 448.4 298 78.9
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 5.7e-124 448.0 304 78.3
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.3e-123 446.8 290 78.6
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 1.3e-123 446.8 296 77.4
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 1.7e-123 446.4 302 78.1
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 2.2e-123 446.0 302 76.5
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 2.2e-123 446.0 302 79.5
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 2.9e-123 445.7 300 80.0
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 3.7e-123 445.3 300 75.3
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 4.9e-123 444.9 301 79.4
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 2.4e-122 442.6 306 77.5
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 2.4e-122 442.6 306 77.5
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 2.4e-122 442.6 306 77.5
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 3.2e-122 442.2 297 76.1
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 3.2e-122 442.2 298 75.5
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 5.4e-122 441.4 303 78.2
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 5.4e-122 441.4 301 76.4
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 7.0e-122 441.0 303 78.5
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 7.0e-122 441.0 303 78.5
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 7.0e-122 441.0 300 79.3
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 7.0e-122 441.0 300 79.3
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 9.2e-122 440.7 301 78.7
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 9.2e-122 440.7 301 81.7
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 1.2e-121 440.3 301 77.4
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 1.2e-121 440.3 303 75.9
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 1.6e-121 439.9 303 79.9
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 2.0e-121 439.5 300 78.0
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.7e-121 439.1 304 77.3
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 2.7e-121 439.1 301 75.4
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 5.9e-121 438.0 302 79.1
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 5.9e-121 438.0 300 77.7
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 5.9e-121 438.0 302 79.5
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 7.8e-121 437.6 297 75.8
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 7.8e-121 437.6 303 78.2
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 7.8e-121 437.6 300 79.0
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 7.8e-121 437.6 304 73.4
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 7.8e-121 437.6 302 76.2
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 7.8e-121 437.6 305 78.7
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 1.0e-120 437.2 297 75.4
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.7e-120 436.4 304 76.3
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 2.3e-120 436.0 304 75.7
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 5.0e-120 434.9 300 74.3
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 6.6e-120 434.5 304 73.4
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 8.6e-120 434.1 302 75.8
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 3.3e-119 432.2 302 78.5
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 4.0e-117 425.2 302 75.5
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 4.0e-117 425.2 299 77.3
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 5.2e-117 424.9 304 73.0
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 6.8e-117 424.5 301 76.7
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 6.8e-117 424.5 293 81.6
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 6.8e-117 424.5 303 71.9
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 8.9e-117 424.1 296 76.7
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 3.4e-116 422.2 301 77.1
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 4.4e-116 421.8 299 77.9
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 7.5e-116 421.0 299 72.9
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 1.3e-115 420.2 283 76.7
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 2.2e-115 419.5 301 76.1
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 3.7e-115 418.7 301 76.4
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 4.6e-113 411.8 297 74.7
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 4.6e-113 411.8 297 74.7
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 4.6e-113 411.8 297 74.7
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 7.8e-113 411.0 298 73.2
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 3.0e-112 409.1 302 75.2
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 5.0e-112 408.3 298 73.8
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 1.1e-111 407.1 298 73.2
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.5e-111 406.0 302 75.2
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 5.6e-111 404.8 303 75.9
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 6.2e-110 401.4 299 71.6
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 5.2e-109 398.3 296 67.9
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 3.5e-105 385.6 312 67.6
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 3.9e-104 382.1 293 67.9
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.5e-100 370.2 278 73.7
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 6.4e-99 364.8 297 64.0
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 7.8e-97 357.8 284 69.0
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 2.1e-94 349.7 301 66.4
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 8.9e-93 344.4 319 63.0
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 7.8e-89 331.3 246 76.4
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 1.0e-88 330.9 195 81.0
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 8.7e-88 327.8 301 56.1
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 1.5e-84 317.0 292 60.3
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 4.3e-79 298.9 296 60.5
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 5.6e-79 298.5 299 56.9
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 7.4e-79 298.1 297 53.9
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.6e-78 297.0 246 64.6
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 4.9e-67 258.8 134 94.0
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 8.4e-67 258.1 296 49.7
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.5e-63 246.5 271 57.9
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.7e-59 233.8 195 66.7
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 3.3e-55 219.5 188 68.6
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 2.4e-53 213.4 204 63.7
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.6e-52 209.9 164 76.8
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 1.4e-50 204.1 305 44.6
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 9.4e-50 201.4 287 46.0
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 7.9e-49 198.4 227 55.1
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 7.7e-44 181.8 192 57.8
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.2e-41 174.5 191 57.1
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 1.1e-39 167.9 197 46.2
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 4.4e-39 166.0 111 77.5
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 2.0e-36 157.1 104 71.2
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 2.3e-32 143.7 164 47.6
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 2.2e-30 137.1 271 45.0
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 5.3e-29 132.5 102 63.7
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 7.0e-21 105.5 147 48.3
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 7.0e-21 105.5 77 68.8
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 3.5e-20 103.2 61 75.4
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 7.7e-20 102.1 77 64.9
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.0e-19 101.7 297 34.3
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 1.7e-19 100.9 297 34.0
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 4.2e-18 96.3 112 61.6
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 7.2e-18 95.5 112 56.2
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 1.2e-17 94.7 59 72.9
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 8.3e-14 82.0 94 56.4
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 1.3e-11 74.7 55 76.4
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 1.3e-11 74.7 89 52.8
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 2.5e-10 70.5 122 44.3


User provided reference genes

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