Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0943 Trochodendron aralioides HOM05D003902 ORTHO05D005866 4.8e-100 367.9 188 100.0
Sabra14G0079900 Salix brachista HOM05D003902 ORTHO05D005866 2.9e-36 156.0 276 39.9
TAR374G1339 Trochodendron aralioides HOM05D003902 ORTHO05D005866 1.1e-35 154.1 308 37.0
Nn068s42296 Nelumbo nucifera HOM05D003902 ORTHO05D005866 1.4e-35 153.7 308 37.3
Nn5g28264 Nelumbo nucifera HOM05D003902 ORTHO05D005866 1.4e-35 153.7 308 37.3
Gohir.A07G133200 Gossypium hirsutum HOM05D003902 ORTHO05D005866 7.8e-34 147.9 320 35.0
Gohir.D07G137700 Gossypium hirsutum HOM05D003902 ORTHO05D005866 1.0e-33 147.5 308 35.7
Gorai.001G149800 Gossypium raimondii HOM05D003902 ORTHO05D005866 1.0e-33 147.5 308 35.7
PGR042G3296 Punica granatum HOM05D003902 ORTHO05D005866 3.0e-33 146.0 311 35.7
Dinv40719 Davidia involucrata HOM05D003902 ORTHO05D005866 6.6e-33 144.8 312 35.6
Prupe.2G203400 Prunus persica HOM05D003902 ORTHO05D005866 6.6e-33 144.8 310 35.2
Dinv32654 Davidia involucrata HOM05D003902 ORTHO05D005866 1.5e-32 143.7 310 35.8
MD07G1164400 Malus domestica HOM05D003902 ORTHO05D005866 1.9e-32 143.3 310 34.8
Haze_15766 Corylus avellana HOM05D003902 ORTHO05D005866 2.5e-32 142.9 255 40.0
Glyma.16G016200 Glycine max HOM05D003902 ORTHO05D005866 3.3e-32 142.5 310 33.9
MD01G1095300 Malus domestica HOM05D003902 ORTHO05D005866 9.5e-32 141.0 310 34.8
Glyma.07G047700 Glycine max HOM05D003902 ORTHO05D005866 4.7e-31 138.7 277 35.0
Cc00_g05410 Coffea canephora HOM05D003902 ORTHO05D005866 8.1e-31 137.9 308 33.8
TWI09G0903 Tripterygium wilfordii HOM05D003902 ORTHO05D005866 8.1e-31 137.9 312 33.3
Ciclev10020807m.g Citrus clementina HOM05D003902 ORTHO05D005866 1.4e-30 137.1 310 33.9
VMungo0331G0507 Vigna mungo HOM05D003902 ORTHO05D005866 1.4e-30 137.1 310 33.9
Cc09_g09110 Coffea canephora HOM05D003902 ORTHO05D005866 2.4e-30 136.3 308 33.4
Sabra02G0132600 Salix brachista HOM05D003902 ORTHO05D005866 3.1e-30 136.0 304 35.9
Potri.002G182600 Populus trichocarpa HOM05D003902 ORTHO05D005866 4.0e-30 135.6 310 35.8
Phvul.003G017600 Phaseolus vulgaris HOM05D003902 ORTHO05D005866 5.2e-30 135.2 310 33.5
Eucgr.A02139 Eucalyptus grandis HOM05D003902 ORTHO05D005866 6.8e-30 134.8 308 33.8
arahy.Tifrunner.gnm1.ann1.GE61F7 Arachis hypogaea HOM05D003902 ORTHO05D005866 2.0e-29 133.3 310 33.2
Cfa003716 Carpinus fangiana HOM05D003902 ORTHO05D005866 2.0e-29 133.3 285 36.1
CiPaw.02G046000 Carya illinoinensis HOM05D003902 ORTHO05D005866 2.0e-29 133.3 310 36.1
vmacro11191 Vaccinium macrocarpon HOM05D003902 ORTHO05D005866 2.6e-29 132.9 306 35.0
FvH4_7g18130 Fragaria vesca HOM05D003902 ORTHO05D005866 3.4e-29 132.5 271 33.9
Nitab4.5_0001819g0080 Nicotiana tabacum HOM05D003902 ORTHO05D005866 3.4e-29 132.5 304 33.2
Sed0016671 Sechium edule HOM05D003902 ORTHO05D005866 3.4e-29 132.5 310 32.9
THA.LOC104825915 Tarenaya hassleriana HOM05D003902 ORTHO05D005866 4.4e-29 132.1 312 34.0
GSVIVG01023391001 Vitis vinifera HOM05D003902 ORTHO05D005866 5.8e-29 131.7 310 35.8
Actinidia28870 Actinidia chinensis HOM05D003902 ORTHO05D005866 7.6e-29 131.3 282 35.8
GSVIVG01022422001 Vitis vinifera HOM05D003902 ORTHO05D005866 7.6e-29 131.3 310 35.5
FvH4_7g18100 Fragaria vesca HOM05D003902 ORTHO05D005866 9.9e-29 131.0 310 32.3
Thecc.01G330300 Theobroma cacao HOM05D003902 ORTHO05D005866 9.9e-29 131.0 308 35.1
RcHm_v2.0_Chr1g0361751 Rosa chinensis HOM05D003902 ORTHO05D005866 1.3e-28 130.6 310 32.9
ClCG10G008700 Citrullus lanatus HOM05D003902 ORTHO05D005866 2.9e-28 129.4 310 32.9
CAN.G546.26 Capsicum annuum HOM05D003902 ORTHO05D005866 3.8e-28 129.0 289 33.6
Lj3g0025959 Lotus japonicus HOM05D003902 ORTHO05D005866 3.8e-28 129.0 306 33.0
Peaxi162Scf00086g01414 Petunia axillaris HOM05D003902 ORTHO05D005866 4.9e-28 128.6 310 33.2
CsaV3_3G039450 Cucumis sativus L. HOM05D003902 ORTHO05D005866 6.4e-28 128.3 308 32.8
Aa31LG5G1280 Aethionema arabicum HOM05D003902 ORTHO05D005866 8.4e-28 127.9 311 33.8
arahy.Tifrunner.gnm1.ann1.EQY875 Arachis hypogaea HOM05D003902 ORTHO05D005866 8.4e-28 127.9 330 32.4
MSTRG.9234 Avicennia marina HOM05D003902 ORTHO05D005866 1.1e-27 127.5 306 34.3
Thhalv10028775m.g Eutrema salsugineum HOM05D003902 ORTHO05D005866 1.4e-27 127.1 303 34.7
QL02p054986 Quercus lobata HOM05D003902 ORTHO05D005866 1.4e-27 127.1 308 33.8
SGA_v2.0_scaffold16G07544 Striga asiatica HOM05D003902 ORTHO05D005866 1.4e-27 127.1 310 34.2
SGA_v2.0_scaffold82G26257 Striga asiatica HOM05D003902 ORTHO05D005866 1.9e-27 126.7 308 34.7
CANSAT80G0986 Cannabis sativa HOM05D003902 ORTHO05D005866 3.2e-27 125.9 305 33.4
Medtr8g023820 Medicago truncatula HOM05D003902 ORTHO05D005866 3.2e-27 125.9 269 33.1
Oeu014509.1 Olea europaea HOM05D003902 ORTHO05D005866 3.2e-27 125.9 308 32.5
FAN06G2806 Fragaria x ananassa HOM05D003902 ORTHO05D005866 4.1e-27 125.6 296 32.1
HPP92_016601 Vanilla planifolia HOM05D003902 ORTHO05D005866 5.4e-27 125.2 308 32.1
ATR0315G125 Amborella trichopoda HOM05D003902 ORTHO05D005866 7.1e-27 124.8 319 32.3
Potri.014G108400 Populus trichocarpa HOM05D003902 ORTHO05D005866 7.1e-27 124.8 309 34.0
Nitab4.5_0000329g0230 Nicotiana tabacum HOM05D003902 ORTHO05D005866 9.2e-27 124.4 319 31.7
AT4G01560 Arabidopsis thaliana HOM05D003902 ORTHO05D005866 1.2e-26 124.0 297 33.3
Duzib138G1363 Durio zibethinus HOM05D003902 ORTHO05D005866 1.2e-26 124.0 321 34.0
SalBow1G7347 Salvia bowleyana HOM05D003902 ORTHO05D005866 1.2e-26 124.0 305 33.4
SalBow1G8176 Salvia bowleyana HOM05D003902 ORTHO05D005866 1.6e-26 123.6 305 33.4
Sp6g01470 Schrenkiella parvula HOM05D003902 ORTHO05D005866 2.1e-26 123.2 303 33.7
Lsat_1_v5_gn_7_76501 Lactuca sativa HOM05D003902 ORTHO05D005866 2.7e-26 122.9 313 31.9
AL6G51780 Arabidopsis lyrata HOM05D003902 ORTHO05D005866 3.5e-26 122.5 301 33.2
Carub.0006s3564 Capsella rubella HOM05D003902 ORTHO05D005866 4.6e-26 122.1 302 33.4
FAN01G1310 Fragaria x ananassa HOM05D003902 ORTHO05D005866 4.6e-26 122.1 321 30.8
FAN10G0112 Fragaria x ananassa HOM05D003902 ORTHO05D005866 4.6e-26 122.1 321 30.8
FAN10G1292 Fragaria x ananassa HOM05D003902 ORTHO05D005866 4.6e-26 122.1 321 30.8
FAN03G2357 Fragaria x ananassa HOM05D003902 ORTHO05D005866 6.0e-26 121.7 321 30.8
Sopen11g026020 Solanum pennellii HOM05D003902 ORTHO05D005866 7.8e-26 121.3 307 32.6
C09p01200 Brassica napus HOM05D003902 ORTHO05D005866 1.0e-25 120.9 303 33.0
unitig_747.g21998 Utricularia gibba HOM05D003902 ORTHO05D005866 1.0e-25 120.9 304 32.2
ClCG10G016910 Citrullus lanatus HOM05D003902 ORTHO05D005866 1.3e-25 120.6 274 32.5
FAN06G3546 Fragaria x ananassa HOM05D003902 ORTHO05D005866 1.3e-25 120.6 321 30.8
MBI12_g05893_MAGBIO Magnolia biondii HOM05D003902 ORTHO05D005866 1.7e-25 120.2 313 31.9
PGSC0003DMG400000409 Solanum tuberosum HOM05D003902 ORTHO05D005866 2.3e-25 119.8 307 32.2
Migut.C00356 Erythranthe guttata HOM05D003902 ORTHO05D005866 3.0e-25 119.4 304 33.2
Rhsim01G0181600 Rhododendron simsii HOM05D003902 ORTHO05D005866 3.9e-25 119.0 313 33.5
TPR.G32793 Trifolium pratense HOM05D003902 ORTHO05D005866 3.9e-25 119.0 261 31.8
A09p01120 Brassica napus HOM05D003902 ORTHO05D005866 5.1e-25 118.6 303 32.7
BolC9t53054H Brassica oleracea HOM05D003902 ORTHO05D005866 5.1e-25 118.6 303 32.7
MELO3C009689.2 Cucumis melo HOM05D003902 ORTHO05D005866 5.1e-25 118.6 272 32.0
Solyc11g066280.3 Solanum lycopersicum HOM05D003902 ORTHO05D005866 6.6e-25 118.2 307 32.2
BcaC04g24086 Brassica carinata HOM05D003902 ORTHO05D005866 8.6e-25 117.9 303 32.3
BraA09t35783Z Brassica rapa HOM05D003902 ORTHO05D005866 8.6e-25 117.9 303 32.3
SEGI_13893 Sequoiadendron giganteum HOM05D003902 ORTHO05D005866 1.1e-24 117.5 308 32.5
Aqoxy4G02970 Aquilegia oxysepala HOM05D003902 ORTHO05D005866 1.9e-24 116.7 269 33.1
CARHR250110 Cardamine hirsuta HOM05D003902 ORTHO05D005866 1.9e-24 116.7 302 33.1
BcaB01g02136 Brassica carinata HOM05D003902 ORTHO05D005866 2.5e-24 116.3 303 33.0
Psat4g164400 Pisum sativum HOM05D003902 ORTHO05D005866 3.3e-24 115.9 261 31.4
Manes.07G093900 Manihot esculenta HOM05D003902 ORTHO05D005866 1.2e-23 114.0 310 31.9
EL10Ac1g00160 Beta vulgaris HOM05D003902 ORTHO05D005866 1.1e-22 110.9 293 33.8
Os06g0137500 Oryza sativa ssp. japonica HOM05D003902 ORTHO05D005866 4.0e-22 109.0 304 28.6
AUR62004576 Chenopodium quinoa HOM05D003902 ORTHO05D005866 9.0e-22 107.8 306 32.0
COL.COLO4_23075 Corchorus olitorius HOM05D003902 ORTHO05D005866 9.0e-22 107.8 269 32.0
CSS0017733 Camellia sinensis var. sinensis HOM05D003902 ORTHO05D005866 1.2e-21 107.5 305 30.2
AUR62023522 Chenopodium quinoa HOM05D003902 ORTHO05D005866 1.2e-21 107.5 306 31.4
ECA236G3056 Erigeron canadensis HOM05D003902 ORTHO05D005866 4.4e-21 105.5 309 31.7
Ah.05g178790 Amaranthus hybridus HOM05D003902 ORTHO05D005866 1.3e-20 104.0 244 35.2
HanXRQChr07g0187351 Helianthus annuus HOM05D003902 ORTHO05D005866 1.7e-20 103.6 310 30.0
Lalb_Chr10g0100971 Lupinus albus HOM05D003902 ORTHO05D005866 3.8e-20 102.4 261 29.1
Zm00001eb356330 Zea mays HOM05D003902 ORTHO05D005866 3.8e-20 102.4 302 29.5
BcaB01g02370 Brassica carinata HOM05D003902 ORTHO05D005866 4.9e-20 102.1 330 29.7
PSO384G4956 Papaver somniferum HOM05D003902 ORTHO05D005866 6.4e-20 101.7 305 28.2
Ca_23480_v3 Cicer arietinum L. HOM05D003902 ORTHO05D005866 1.1e-19 100.9 295 30.8
RcHm_v2.0_Chr2g0110161 Rosa chinensis HOM05D003902 ORTHO05D005866 1.1e-19 100.9 146 39.0
RcHm_v2.0_Chr1g0321231 Rosa chinensis HOM05D003902 ORTHO05D005866 3.2e-19 99.4 148 39.2
SMO244G0063 Selaginella moellendorffii HOM05D003902 ORTHO05D005866 3.2e-19 99.4 309 28.2
PSO339G4022 Papaver somniferum HOM05D003902 ORTHO05D005866 7.1e-19 98.2 305 27.5
Atru.chr5.804 Acer truncatum HOM05D003902 ORTHO05D005866 1.2e-18 97.4 63 71.4
RcHm_v2.0_Chr4g0406331 Rosa chinensis HOM05D003902 ORTHO05D005866 1.2e-18 97.4 158 37.3
RcHm_v2.0_Chr5g0052991 Rosa chinensis HOM05D003902 ORTHO05D005866 1.6e-18 97.1 148 37.8
DCAR_024001 Daucus carota HOM05D003902 ORTHO05D005866 2.7e-18 96.3 283 30.7
MD01G1097300 Malus domestica HOM05D003902 ORTHO05D005866 6.0e-18 95.1 158 42.4
Mapoly0132s0039 Marchantia polymorpha HOM05D003902 ORTHO05D005866 1.3e-17 94.0 298 27.5
RcHm_v2.0_Chr5g0043791 Rosa chinensis HOM05D003902 ORTHO05D005866 1.3e-17 94.0 120 42.5
RcHm_v2.0_Chr7g0219071 Rosa chinensis HOM05D003902 ORTHO05D005866 1.3e-17 94.0 159 37.1
Cpa.g.c32082 Carica papaya HOM05D003902 ORTHO05D005866 5.1e-17 92.0 160 41.9
Nn1g08916 Nelumbo nucifera HOM05D003902 ORTHO05D005866 1.1e-16 90.9 154 41.6
RcHm_v2.0_Chr1g0346391 Rosa chinensis HOM05D003902 ORTHO05D005866 1.1e-16 90.9 102 45.1
Aqoxy2G04194 Aquilegia oxysepala HOM05D003902 ORTHO05D005866 1.9e-16 90.1 178 34.8
Lj9A609G66 Lonicera japonica HOM05D003902 ORTHO05D005866 1.9e-16 90.1 168 39.9
CDE04G0523 Ceratophyllum demersum HOM05D003902 ORTHO05D005866 2.5e-16 89.7 179 34.1
RcHm_v2.0_Chr7g0204491 Rosa chinensis HOM05D003902 ORTHO05D005866 3.3e-16 89.4 170 33.5
RcHm_v2.0_Chr5g0055421 Rosa chinensis HOM05D003902 ORTHO05D005866 9.6e-16 87.8 102 44.1
RcHm_v2.0_Chr3g0479951 Rosa chinensis HOM05D003902 ORTHO05D005866 1.4e-14 84.0 85 50.6
FAN03G0853 Fragaria x ananassa HOM05D003902 ORTHO05D005866 1.8e-14 83.6 94 44.7
Pp3c1_10040 Physcomitrium patens HOM05D003902 ORTHO05D005866 1.8e-14 83.6 314 26.4
FAN03G3101 Fragaria x ananassa HOM05D000028 ORTHO05D001812 4.0e-14 82.4 160 37.5
Duzib133G1020 Durio zibethinus HOM05D003902 ORTHO05D005866 5.3e-14 82.0 153 39.2
RcHm_v2.0_Chr7g0228521 Rosa chinensis HOM05D003902 ORTHO05D005866 1.2e-13 80.9 79 50.6
Sc01g0002090 Simmondsia chinensis HOM05D003902 ORTHO05D005866 2.6e-13 79.7 155 37.4
Cc01_g05930 Coffea canephora HOM05D003902 ORTHO05D005866 3.4e-13 79.3 60 60.0
Phvul.010G121301 Phaseolus vulgaris HOM05D003902 ORTHO05D048967 1.3e-12 77.4 63 65.1
Aqoxy2G01409 Aquilegia oxysepala HOM05D003902 ORTHO05D005866 2.4e-11 73.2 120 39.2
Lj9A609T73 Lonicera japonica HOM05D003902 ORTHO05D005866 2.7e-10 69.7 31 90.3
RcHm_v2.0_Chr3g0493911 Rosa chinensis HOM05D003902 ORTHO05D005866 1.8e-09 67.0 43 67.4
Peaxi162Scf00004g04214 Petunia axillaris HOM05D003902 ORTHO05D005866 5.6e-08 62.0 63 55.6
CBR_g19066 Chara braunii HOM05D003902 ORTHO05D005866 7.4e-08 61.6 36 66.7
Medtr1g087510 Medicago truncatula HOM05D003902 ORTHO05D262154 3.7e-07 59.3 70 50.0
Cre04.g218850 Chlamydomonas reinhardtii HOM05D003902 ORTHO05D005866 1.4e-06 57.4 60 50.0
PRCOL_00005239 Prasinoderma coloniale HOM05D003902 ORTHO05D005866 5.3e-06 55.5 52 50.0


User provided reference genes

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