Gene: AT4G01560

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G01560
  • Transcript Identifier AT4G01560.1
  • Gene Type Coding gene
  • Location Chr4 : 677266-679164 : negative

Gene Family Information

  • ID HOM05D003902
  • #Genes/#Species 178/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G01560.1
  • symbol MEE49
  • full_name maternal effect embryo arrest 49
  • uniprot Q9M125

Descriptions

  • Description Ribosomal RNA processing Brix domain protein
  • Computational description maternal effect embryo arrest 49 (MEE49); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: Ribosomal RNA processing Brix domain protein (TAIR:AT1G63780.1); Has 893 Blast hits to 882 proteins in 227 species: Archae - 2; Bacteria - 0; Metazoa - 265; Fungi - 337; Plants - 121; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy1
GO:0000460
IBA
Gene Ontologymaturation of 5.8S rRNA2
GO:0000470
IBA
Gene Ontologymaturation of LSU-rRNA2
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0006364
IBA
Gene OntologyrRNA processing2
GO:0006364
IEA
InterProrRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042134
IEA
Gene OntologyrRNA primary transcript binding
GO:0042134
IEA
InterProrRNA primary transcript binding
GO:0019843
IEA
GOA DatabaserRNA binding
GO:0019843
IEA
InterProrRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0030687
IBA
Gene Ontologypreribosome, large subunit precursor2
GO:0005730
IBA
Gene Ontologynucleolus2
GO:0005829
IDA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007109 Brix domain
IPR044281 U3 snoRNP protein/Ribosome production factor 1
Mapman id Description
17.1.2.2.1.4 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.pre-60S ribosomal subunit nuclear assembly.assembly factor (RPF1)