Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR375G0219 Trochodendron aralioides HOM05D003916 ORTHO05D415546 1.0e-82 310.5 153 100.0
TAR629G1015 Trochodendron aralioides HOM05D000041 ORTHO05D006140 1.7e-08 63.9 49 63.3
COL.COLO4_04866 Corchorus olitorius HOM05D003916 ORTHO05D004655 2.4e-07 60.1 45 66.7
COL.COLO4_11374 Corchorus olitorius HOM05D003916 ORTHO05D004655 2.4e-07 60.1 45 66.7
Dinv43429 Davidia involucrata HOM05D003916 ORTHO05D004655 2.4e-07 60.1 45 66.7
Duzib138G1764 Durio zibethinus HOM05D003916 ORTHO05D004655 2.4e-07 60.1 45 66.7
FvH4_2g07830 Fragaria vesca HOM05D003916 ORTHO05D004655 2.4e-07 60.1 45 66.7
FAN15G2464 Fragaria x ananassa HOM05D003916 ORTHO05D004655 2.4e-07 60.1 45 66.7
FAN20G2116 Fragaria x ananassa HOM05D003916 ORTHO05D004655 2.4e-07 60.1 45 66.7
FAN24G3392 Fragaria x ananassa HOM05D003916 ORTHO05D004655 2.4e-07 60.1 45 66.7
FAN27G3016 Fragaria x ananassa HOM05D003916 ORTHO05D004655 2.4e-07 60.1 45 66.7
Hma1.2p1_0495F.1_g165640 Hydrangea macrophylla HOM05D003916 ORTHO05D004655 2.4e-07 60.1 45 66.7
MD05G1071600 Malus domestica HOM05D003916 ORTHO05D004655 2.4e-07 60.1 45 66.7
MD10G1083600 Malus domestica HOM05D003916 ORTHO05D004655 2.4e-07 60.1 45 66.7
Oeu048996.1 Olea europaea HOM05D003916 ORTHO05D004655 2.4e-07 60.1 45 66.7
Prupe.8G106600 Prunus persica HOM05D003916 ORTHO05D004655 2.4e-07 60.1 45 66.7
PGR031G2324 Punica granatum HOM05D003916 ORTHO05D004655 2.4e-07 60.1 45 66.7
SGA_v2.0_scaffold114G31877 Striga asiatica HOM05D003916 ORTHO05D004655 2.4e-07 60.1 45 66.7
THA.LOC104801974 Tarenaya hassleriana HOM05D003916 ORTHO05D004655 2.4e-07 60.1 45 66.7
Atru.chr11.2605 Acer truncatum HOM05D003916 ORTHO05D004655 3.2e-07 59.7 45 64.4
MSTRG.9650 Avicennia marina HOM05D003916 ORTHO05D004655 3.2e-07 59.7 45 64.4
Manes.07G007100 Manihot esculenta HOM05D003916 ORTHO05D004655 3.2e-07 59.7 45 64.4
Manes.10G140600 Manihot esculenta HOM05D003916 ORTHO05D004655 3.2e-07 59.7 45 64.4
Rhsim07G0056500 Rhododendron simsii HOM05D003916 ORTHO05D004655 3.2e-07 59.7 45 64.4
vmacro13676 Vaccinium macrocarpon HOM05D003916 ORTHO05D004655 3.2e-07 59.7 45 64.4
GSVIVG01036004001 Vitis vinifera HOM05D003916 ORTHO05D004655 3.2e-07 59.7 45 64.4
TAR636G0073 Trochodendron aralioides HOM05D003916 ORTHO05D004655 4.2e-07 59.3 45 62.2
Actinidia19401 Actinidia chinensis HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
Aa31LG10G7160 Aethionema arabicum HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
AL5G32640 Arabidopsis lyrata HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
BcaB01g00447 Brassica carinata HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
BcaB02g08590 Brassica carinata HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
BcaC02g09283 Brassica carinata HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
BcaNung06090 Brassica carinata HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
A04p07280 Brassica napus HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
A09p45160 Brassica napus HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
C04p40890 Brassica napus HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
C08p27350 Brassica napus HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
BolC4t25674H Brassica oleracea HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
BolC8t50352H Brassica oleracea HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
BraA04t16424Z Brassica rapa HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
BraA09t39977Z Brassica rapa HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
CSS0038705 Camellia sinensis var. sinensis HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
Carub.0005s1841 Capsella rubella HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
CARHR161800 Cardamine hirsuta HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
Thhalv10010833m.g Eutrema salsugineum HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
Gohir.A05G320501 Gossypium hirsutum HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
Gohir.D05G317100 Gossypium hirsutum HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
Gorai.009G339400 Gossypium raimondii HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
Hma1.2p1_0184F.1_g081310 Hydrangea macrophylla HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
Medtr4g037750 Medicago truncatula HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 66.7
Oeu061209.2 Olea europaea HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
Peaxi162Scf00619g00024 Petunia axillaris HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
Psat0s2770g0080 Pisum sativum HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 66.7
SGA_v2.0_scaffold7G04094 Striga asiatica HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
Thecc.01G409200 Theobroma cacao HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
TPR.G3662 Trifolium pratense HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 66.7
TWI09G0558 Tripterygium wilfordii HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
unitig_0.g2398 Utricularia gibba HOM05D003916 ORTHO05D004655 5.5e-07 58.9 45 64.4
AT3G52090 Arabidopsis thaliana HOM05D003916 ORTHO05D004655 7.1e-07 58.5 45 62.2
ClCG10G012300 Citrullus lanatus HOM05D003916 ORTHO05D004655 7.1e-07 58.5 45 64.4
Ciclev10033103m.g Citrus clementina HOM05D003916 ORTHO05D004655 7.1e-07 58.5 45 64.4
MELO3C023983.2 Cucumis melo HOM05D003916 ORTHO05D004655 7.1e-07 58.5 45 64.4
CsaV3_3G032080 Cucumis sativus L. HOM05D003916 ORTHO05D004655 7.1e-07 58.5 45 64.4
DCAR_022384 Daucus carota HOM05D003916 ORTHO05D004655 7.1e-07 58.5 45 62.2
Migut.D01881 Erythranthe guttata HOM05D003916 ORTHO05D004655 7.1e-07 58.5 45 62.2
Migut.O00412 Erythranthe guttata HOM05D003916 ORTHO05D004655 7.1e-07 58.5 45 62.2
Eucgr.G03369 Eucalyptus grandis HOM05D003916 ORTHO05D004655 7.1e-07 58.5 45 62.2
Medtr6g004540 Medicago truncatula HOM05D003916 ORTHO05D004655 7.1e-07 58.5 45 64.4
Peaxi162Scf00948g00222 Petunia axillaris HOM05D003916 ORTHO05D004655 7.1e-07 58.5 45 62.2
Potri.009G070900 Populus trichocarpa HOM05D003916 ORTHO05D004655 7.1e-07 58.5 45 62.2
SalBow8G4163 Salvia bowleyana HOM05D003916 ORTHO05D004655 7.1e-07 58.5 45 62.2
arahy.Tifrunner.gnm1.ann1.KPCT5J Arachis hypogaea HOM05D003916 ORTHO05D004655 9.3e-07 58.2 45 62.2
arahy.Tifrunner.gnm1.ann1.U5V8MN Arachis hypogaea HOM05D003916 ORTHO05D004655 9.3e-07 58.2 45 62.2
RcHm_v2.0_Chr6g0262241 Rosa chinensis HOM05D003916 ORTHO05D004655 9.3e-07 58.2 45 64.4
arahy.Tifrunner.gnm1.ann1.8R0KJ7 Arachis hypogaea HOM05D003916 ORTHO05D004655 1.2e-06 57.8 45 62.2
arahy.Tifrunner.gnm1.ann1.YBFT0T Arachis hypogaea HOM05D003916 ORTHO05D004655 1.2e-06 57.8 45 62.2
EL10Ac3g07468 Beta vulgaris HOM05D003916 ORTHO05D004655 1.2e-06 57.8 45 64.4
CANSAT35G0488 Cannabis sativa HOM05D003916 ORTHO05D004655 1.2e-06 57.8 45 62.2
Cfa010792 Carpinus fangiana HOM05D003916 ORTHO05D004655 1.2e-06 57.8 45 64.4
AUR62018571 Chenopodium quinoa HOM05D003916 ORTHO05D004655 1.2e-06 57.8 45 64.4
AUR62020845 Chenopodium quinoa HOM05D003916 ORTHO05D004655 1.2e-06 57.8 45 64.4
AUR62043813 Chenopodium quinoa HOM05D003916 ORTHO05D004655 1.2e-06 57.8 45 64.4
Haze_03179 Corylus avellana HOM05D003916 ORTHO05D004655 1.2e-06 57.8 45 64.4
Haze_25581 Corylus avellana HOM05D003916 ORTHO05D004655 1.2e-06 57.8 45 64.4
Gorai.004G066500 Gossypium raimondii HOM05D003916 ORTHO05D004655 1.2e-06 57.8 45 64.4
Lj3g0019679 Lotus japonicus HOM05D003916 ORTHO05D004655 1.2e-06 57.8 45 64.4
Sp5g10210 Schrenkiella parvula HOM05D003916 ORTHO05D004655 1.2e-06 57.8 45 62.2
Sc23g0005950 Simmondsia chinensis HOM05D003916 ORTHO05D004655 1.2e-06 57.8 45 64.4
Aqoxy3G00363 Aquilegia oxysepala HOM05D003916 ORTHO05D004655 1.6e-06 57.4 45 62.2
CiPaw.13G006500 Carya illinoinensis HOM05D003916 ORTHO05D004655 1.6e-06 57.4 45 62.2
Gohir.A08G054500 Gossypium hirsutum HOM05D003916 ORTHO05D004655 1.6e-06 57.4 45 64.4
Gohir.D08G064200 Gossypium hirsutum HOM05D003916 ORTHO05D004655 1.6e-06 57.4 45 64.4
Lalb_Chr03g0040011 Lupinus albus HOM05D003916 ORTHO05D004655 1.6e-06 57.4 45 62.2
MBI04_g41600_MAGBIO Magnolia biondii HOM05D003916 ORTHO05D004655 1.6e-06 57.4 45 62.2
Nitab4.5_0000130g0090 Nicotiana tabacum HOM05D003916 ORTHO05D004655 1.6e-06 57.4 45 62.2
Nitab4.5_0010117g0010 Nicotiana tabacum HOM05D003916 ORTHO05D004655 1.6e-06 57.4 45 62.2
QL04p008135 Quercus lobata HOM05D003916 ORTHO05D004655 1.6e-06 57.4 45 62.2
QL04p008511 Quercus lobata HOM05D003916 ORTHO05D004655 1.6e-06 57.4 45 62.2
TAR633G2550 Trochodendron aralioides HOM05D003916 ORTHO05D004655 1.6e-06 57.4 45 60.0
PSO591G0016 Papaver somniferum HOM05D003916 ORTHO05D004655 2.1e-06 57.0 45 60.0
PSO832G0252 Papaver somniferum HOM05D003916 ORTHO05D004655 2.1e-06 57.0 45 60.0
CiPaw.14G001100 Carya illinoinensis HOM05D003916 ORTHO05D004655 2.7e-06 56.6 45 60.0
Cc03_g12460 Coffea canephora HOM05D003916 ORTHO05D004655 2.7e-06 56.6 55 54.5
SEGI_19516 Sequoiadendron giganteum HOM05D003916 ORTHO05D004655 2.7e-06 56.6 46 60.9
SEGI_39087 Sequoiadendron giganteum HOM05D003916 ORTHO05D004655 2.7e-06 56.6 46 60.9
Zm00001eb214480 Zea mays HOM05D003916 ORTHO05D004655 2.7e-06 56.6 45 57.8
Zm00001eb247210 Zea mays HOM05D003916 ORTHO05D004655 2.7e-06 56.6 45 57.8
Zm00001eb247300 Zea mays HOM05D003916 ORTHO05D004655 2.7e-06 56.6 45 57.8
Cpa.g.sc125.23 Carica papaya HOM05D003916 ORTHO05D004655 3.5e-06 56.2 45 62.2
CiPaw.03G260400 Carya illinoinensis HOM05D003916 ORTHO05D004655 3.5e-06 56.2 46 58.7
ECA234G4622 Erigeron canadensis HOM05D003916 ORTHO05D004655 3.5e-06 56.2 45 62.2
ECA248G0794 Erigeron canadensis HOM05D003916 ORTHO05D004655 3.5e-06 56.2 45 62.2
Glyma.09G228500 Glycine max HOM05D003916 ORTHO05D004655 3.5e-06 56.2 45 62.2
Glyma.12G008000 Glycine max HOM05D003916 ORTHO05D004655 3.5e-06 56.2 45 62.2
HanXRQChr01g0016491 Helianthus annuus HOM05D003916 ORTHO05D004655 3.5e-06 56.2 45 62.2
Lsat_1_v5_gn_1_106300 Lactuca sativa HOM05D003916 ORTHO05D004655 3.5e-06 56.2 45 62.2
Phvul.011G010100 Phaseolus vulgaris HOM05D003916 ORTHO05D004655 3.5e-06 56.2 45 62.2
Sed0020332 Sechium edule HOM05D003916 ORTHO05D004655 3.5e-06 56.2 45 60.0
Hund20252 Selenicereus undatus HOM05D003916 ORTHO05D004655 3.5e-06 56.2 45 60.0
VMungo1127G0323 Vigna mungo HOM05D003916 ORTHO05D004655 3.5e-06 56.2 45 62.2
Nitab4.5_0005283g0050 Nicotiana tabacum HOM05D003916 ORTHO05D004655 4.6e-06 55.8 45 57.8
Os07g0172500 Oryza sativa ssp. japonica HOM05D003916 ORTHO05D004655 4.6e-06 55.8 45 60.0
ATR0751G171 Amborella trichopoda HOM05D003916 ORTHO05D004655 6.0e-06 55.5 45 57.8
Ca_04149_v3 Cicer arietinum L. HOM05D003916 ORTHO05D004655 6.0e-06 55.5 45 62.2
Ca_22196_v3 Cicer arietinum L. HOM05D003916 ORTHO05D004655 6.0e-06 55.5 45 62.2
Nn7g36243 Nelumbo nucifera HOM05D003916 ORTHO05D004655 6.0e-06 55.5 45 60.0
Solyc11g069910.2 Solanum lycopersicum HOM05D003916 ORTHO05D004655 7.9e-06 55.1 45 55.6
Sopen11g028370 Solanum pennellii HOM05D003916 ORTHO05D004655 7.9e-06 55.1 45 55.6
PGSC0003DMG400008095 Solanum tuberosum HOM05D003916 ORTHO05D004655 7.9e-06 55.1 45 55.6


User provided reference genes

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