Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 2.4e-119 432.2 216 100.0
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 8.8e-82 307.4 173 87.9
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.7e-77 293.1 179 78.8
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 1.5e-73 280.0 173 79.2
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 3.7e-72 275.4 175 74.3
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 8.3e-72 274.2 176 76.1
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 1.4e-71 273.5 205 70.2
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 4.1e-71 271.9 173 76.9
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 5.4e-71 271.6 172 75.0
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 9.2e-71 270.8 175 73.7
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 1.3e-69 266.9 184 73.9
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 1.7e-69 266.5 175 72.6
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 2.3e-69 266.2 178 74.7
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 3.0e-69 265.8 174 73.0
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 6.6e-69 264.6 175 74.3
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 8.6e-69 264.2 181 72.4
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 1.5e-68 263.5 208 64.4
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 1.5e-68 263.5 173 72.3
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 1.5e-68 263.5 180 72.2
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 5.6e-68 261.5 197 67.0
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 3.6e-67 258.8 184 71.2
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 4.7e-67 258.5 185 70.3
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 4.7e-67 258.5 182 72.0
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 8.0e-67 257.7 175 69.7
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 5.8e-65 251.5 186 68.8
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 7.5e-65 251.1 188 69.7
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 9.8e-65 250.8 178 71.3
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 2.2e-64 249.6 183 70.5
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 3.7e-64 248.8 211 61.6
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 6.4e-64 248.1 170 70.0
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 8.3e-64 247.7 182 67.0
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.1e-63 247.3 217 59.9
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.4e-63 246.9 205 63.4
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 1.4e-63 246.9 184 67.4
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.4e-63 246.1 184 65.8
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 3.2e-63 245.7 186 68.8
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 3.2e-63 245.7 180 68.3
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 4.1e-63 245.4 168 74.4
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 5.4e-63 245.0 174 71.8
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 7.0e-63 244.6 184 68.5
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.2e-63 244.2 184 69.0
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.2e-63 244.2 184 69.0
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 9.2e-63 244.2 188 68.1
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 1.2e-62 243.8 163 73.6
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 1.2e-62 243.8 188 67.6
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 1.6e-62 243.4 184 67.9
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 2.0e-62 243.0 196 64.8
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 2.7e-62 242.7 188 67.0
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 2.7e-62 242.7 184 68.5
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 2.7e-62 242.7 186 66.1
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 4.6e-62 241.9 188 67.0
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 4.6e-62 241.9 222 59.5
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 6.0e-62 241.5 223 58.3
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.8e-62 241.1 184 67.9
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.8e-62 241.1 184 67.9
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.8e-62 241.1 184 67.9
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.3e-61 240.4 184 66.3
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.3e-61 240.4 196 63.8
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.7e-61 240.0 224 57.6
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.0e-61 239.2 184 67.4
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.0e-61 239.2 184 67.4
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.0e-61 239.2 184 67.4
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 3.9e-61 238.8 157 74.5
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.9e-61 238.8 183 67.8
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 3.9e-61 238.8 169 74.0
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 3.9e-61 238.8 188 67.0
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 5.0e-61 238.4 184 64.7
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 6.6e-61 238.0 184 65.8
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 6.6e-61 238.0 184 65.8
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 6.6e-61 238.0 232 57.3
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 8.6e-61 237.7 188 65.4
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 8.6e-61 237.7 185 67.0
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 1.1e-60 237.3 189 65.1
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 1.1e-60 237.3 188 67.0
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-60 237.3 184 66.8
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 1.9e-60 236.5 215 60.0
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 1.9e-60 236.5 188 67.0
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 4.3e-60 235.3 181 66.3
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 5.6e-60 235.0 231 53.2
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 7.3e-60 234.6 181 66.3
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 9.5e-60 234.2 189 64.6
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 9.5e-60 234.2 189 64.6
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 9.5e-60 234.2 213 59.2
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 6.2e-59 231.5 175 65.1
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 1.1e-58 230.7 213 57.3
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 1.1e-58 230.7 184 65.8
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 1.1e-58 230.7 181 65.2
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 1.1e-58 230.7 181 65.2
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 1.4e-58 230.3 182 64.8
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 1.8e-58 229.9 213 56.3
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 1.8e-58 229.9 196 59.7
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 1.8e-58 229.9 188 65.4
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 3.1e-58 229.2 212 57.1
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 4.0e-58 228.8 182 63.7
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 5.2e-58 228.4 186 63.4
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 8.9e-58 227.6 188 64.9
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 1.2e-57 227.3 212 57.1
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 1.2e-57 227.3 196 63.3
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 2.6e-57 226.1 213 58.7
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 5.8e-57 224.9 212 56.6
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 7.5e-57 224.6 212 56.6
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 9.8e-57 224.2 212 56.1
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 3.7e-56 222.2 181 63.0
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 1.4e-55 220.3 212 55.7
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 2.4e-55 219.5 181 61.9
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 2.4e-55 219.5 181 61.9
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 2.4e-55 219.5 181 61.9
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 3.2e-55 219.2 185 65.4
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 9.2e-55 217.6 226 53.5
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 9.2e-55 217.6 166 65.1
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.2e-54 217.2 181 61.3
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 1.2e-54 217.2 217 54.4
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 2.7e-54 216.1 181 60.8
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 7.8e-54 214.5 186 59.7
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 3.9e-53 212.2 189 59.3
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 2.5e-52 209.5 175 66.3
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.3e-52 208.0 163 67.5
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-50 204.1 157 68.8
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 4.4e-49 198.7 198 54.5
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 1.4e-47 193.7 150 66.7
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.9e-47 193.4 157 64.3
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 5.1e-45 185.3 133 69.9
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 2.5e-44 183.0 267 43.1
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 3.4e-41 172.6 148 62.8
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.9e-40 169.5 148 61.5
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 3.5e-38 162.5 100 79.0
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 2.3e-37 159.8 104 74.0
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 5.6e-36 155.2 126 63.5
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.3e-36 154.8 114 72.8
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 1.3e-35 154.1 133 63.9
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 1.1e-34 151.0 130 66.9
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 1.4e-34 150.6 122 65.6
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 3.2e-31 139.4 104 71.2
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 4.2e-31 139.0 98 74.5
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 7.1e-31 138.3 116 57.8
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 6.0e-30 135.2 128 59.4
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 1.8e-29 133.7 187 39.6
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 8.7e-29 131.3 171 40.9
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 1.5e-28 130.6 169 42.0
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 2.0e-25 120.2 84 67.9
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 1.3e-24 117.5 100 59.0
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 2.9e-24 116.3 182 37.4
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 1.4e-23 114.0 140 51.4
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 3.2e-23 112.8 117 53.8
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.5e-20 104.0 58 79.3
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 3.1e-18 96.3 68 61.8
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 1.2e-17 94.4 58 75.9
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 1.3e-16 90.9 127 41.7
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.3e-13 80.9 66 63.6
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 2.1e-11 73.6 50 66.0
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 3.2e-07 59.7 173 31.2


User provided reference genes

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