Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0631 Trochodendron aralioides HOM05D000806 ORTHO05D007429 6.1e-32 140.2 70 100.0
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 2.2e-18 95.1 49 95.9
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.1e-17 92.8 49 91.8
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.1e-17 92.8 49 91.8
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 2.5e-17 91.7 49 89.8
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 1.2e-16 89.4 49 87.8
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.2e-16 89.4 49 87.8
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.2e-16 89.4 49 87.8
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 1.6e-16 89.0 49 89.8
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 2.1e-16 88.6 49 87.8
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.7e-16 88.2 49 87.8
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 2.7e-16 88.2 50 84.0
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 3.6e-16 87.8 49 87.8
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 3.6e-16 87.8 49 87.8
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.6e-16 87.8 49 85.7
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 3.6e-16 87.8 49 87.8
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 3.6e-16 87.8 49 87.8
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 3.6e-16 87.8 49 87.8
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 3.6e-16 87.8 49 87.8
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 3.6e-16 87.8 49 87.8
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 4.7e-16 87.4 49 85.7
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 4.7e-16 87.4 49 85.7
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 6.1e-16 87.0 49 87.8
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 6.1e-16 87.0 48 83.3
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 8.0e-16 86.7 49 87.8
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 8.0e-16 86.7 49 83.7
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 1.0e-15 86.3 49 83.7
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 1.0e-15 86.3 49 87.8
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 1.0e-15 86.3 49 87.8
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 1.0e-15 86.3 49 87.8
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 1.0e-15 86.3 49 87.8
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 1.0e-15 86.3 49 85.7
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 1.4e-15 85.9 49 85.7
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 1.4e-15 85.9 49 85.7
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 1.4e-15 85.9 49 83.7
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 1.4e-15 85.9 49 83.7
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-15 85.9 49 83.7
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-15 85.9 49 83.7
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-15 85.9 49 83.7
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-15 85.9 49 83.7
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-15 85.9 49 83.7
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-15 85.9 49 83.7
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-15 85.9 49 83.7
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-15 85.9 49 83.7
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-15 85.9 49 83.7
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 1.8e-15 85.5 49 83.7
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 1.8e-15 85.5 49 83.7
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 1.8e-15 85.5 49 83.7
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 1.8e-15 85.5 49 83.7
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 1.8e-15 85.5 49 83.7
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 1.8e-15 85.5 49 87.8
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 1.8e-15 85.5 49 87.8
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 3.0e-15 84.7 49 83.7
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.9e-15 84.3 49 83.7
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 3.9e-15 84.3 49 83.7
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 3.9e-15 84.3 49 83.7
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 6.7e-15 83.6 50 82.0
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 8.8e-15 83.2 49 81.6
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 8.8e-15 83.2 49 81.6
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 8.8e-15 83.2 49 81.6
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 8.8e-15 83.2 49 81.6
ATR1137G001 Amborella trichopoda HOM05D000806 ORTHO05D007429 8.8e-15 83.2 49 83.7
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.1e-14 82.8 49 83.7
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 1.1e-14 82.8 49 81.6
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 1.1e-14 82.8 49 83.7
Lalb_Chr25g0282881 Lupinus albus HOM05D000806 ORTHO05D007429 1.1e-14 82.8 49 83.7
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.5e-14 82.4 58 72.4
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.5e-14 82.4 58 72.4
Sed0021403 Sechium edule HOM05D000806 ORTHO05D002324 2.6e-14 81.6 49 81.6
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 2.6e-14 81.6 49 79.6
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 2.6e-14 81.6 49 79.6
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 3.3e-14 81.3 49 79.6
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 4.4e-14 80.9 49 81.6
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.4e-14 80.9 49 79.6
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 4.4e-14 80.9 49 81.6
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 4.4e-14 80.9 49 81.6
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 4.4e-14 80.9 49 81.6
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 4.4e-14 80.9 49 81.6
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 5.7e-14 80.5 49 79.6
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 5.7e-14 80.5 49 79.6
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 7.4e-14 80.1 48 79.2
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 9.7e-14 79.7 49 77.6
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 9.7e-14 79.7 49 79.6
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 9.7e-14 79.7 49 75.5
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 1.3e-13 79.3 49 79.6
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 81.6
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 81.6
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 81.6
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 81.6
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 81.6
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 81.6
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 81.6
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 81.6
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 81.6
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 81.6
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 81.6
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 81.6
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 81.6
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 81.6
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 81.6
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 77.6
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 81.6
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.7e-13 79.0 49 79.6
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 1.7e-13 79.0 50 82.0
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.8e-13 78.2 49 77.6
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.8e-13 78.2 49 77.6
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.8e-13 78.2 49 77.6
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.8e-13 78.2 49 77.6
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.8e-13 78.2 49 77.6
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.8e-13 78.2 49 77.6
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 2.8e-13 78.2 49 79.6
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 3.7e-13 77.8 49 77.6
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 3.7e-13 77.8 48 79.2
arahy.Tifrunner.gnm1.ann1.X4SEM1 Arachis hypogaea HOM05D000540 ORTHO05D000681 4.8e-13 77.4 49 79.6
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 4.8e-13 77.4 49 79.6
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 4.8e-13 77.4 49 79.6
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 4.8e-13 77.4 48 75.0
EL10As15g24117 Beta vulgaris HOM05D000806 ORTHO05D007429 6.3e-13 77.0 49 73.5
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 6.3e-13 77.0 49 79.6
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 8.2e-13 76.6 49 77.6
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 1.1e-12 76.3 56 66.1
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.8e-12 75.5 45 80.0
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.1e-12 74.7 49 77.6
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 4.1e-12 74.3 46 80.4
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 4.1e-12 74.3 47 74.5
SEGI_16956 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 5.9e-11 70.5 43 81.4
BolC9t58296H Brassica oleracea HOM05D000806 ORTHO05D007429 1.7e-10 68.9 49 73.5
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 1.7e-10 68.9 47 74.5
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 2.9e-10 68.2 49 71.4
CAN.G1163.7 Capsicum annuum HOM05D000806 ORTHO05D007429 3.8e-10 67.8 47 74.5
FAN17G0466 Fragaria x ananassa HOM05D000806 ORTHO05D007429 9.4e-09 63.2 47 61.7
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 9.4e-09 63.2 37 81.1
Hund08021 Selenicereus undatus HOM05D002432 ORTHO05D000695 1.2e-08 62.8 41 75.6
Nitab4.5_0010235g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 6.1e-08 60.5 49 61.2
SGA_v2.0_scaffold213G42216 Striga asiatica HOM05D000806 ORTHO05D007429 3.0e-07 58.2 36 72.2
Nitab4.5_0004697g0020 Nicotiana tabacum HOM05D000806 ORTHO05D007429 4.0e-07 57.8 33 84.8
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 5.7e-06 53.9 33 72.7
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 5.7e-06 53.9 26 100.0
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 7.5e-06 53.5 46 58.7


User provided reference genes

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