Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 3.6e-230 801.2 400 100.0
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.0e-212 742.3 401 92.3
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 1.7e-208 729.2 403 91.8
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 1.8e-205 719.2 404 88.9
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 2.4e-205 718.8 410 90.0
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 3.1e-205 718.4 406 89.7
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 1.2e-204 716.5 406 89.4
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.2e-204 716.5 407 89.4
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 2.6e-204 715.3 409 88.8
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 3.4e-204 714.9 405 88.6
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 4.4e-204 714.5 407 90.7
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 5.8e-204 714.1 407 90.2
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 9.9e-204 713.4 407 90.7
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 1.3e-203 713.0 403 89.1
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.7e-203 712.6 407 88.2
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 3.8e-203 711.4 407 88.5
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 3.8e-203 711.4 409 88.5
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 8.4e-203 710.3 404 88.9
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 4.2e-202 708.0 407 89.7
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 5.4e-202 707.6 410 87.6
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 5.4e-202 707.6 405 87.9
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 5.4e-202 707.6 407 88.5
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 9.3e-202 706.8 409 88.5
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 9.3e-202 706.8 407 88.2
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 1.6e-201 706.1 401 88.0
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 2.1e-201 705.7 407 88.2
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 2.7e-201 705.3 409 88.5
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 7.9e-201 703.7 407 88.9
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 3.9e-200 701.4 403 87.8
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 3.9e-200 701.4 412 86.7
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 3.9e-200 701.4 406 86.0
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 5.1e-200 701.0 417 86.1
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.1e-199 699.9 401 88.0
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 1.5e-199 699.5 419 85.9
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.5e-199 698.7 405 87.2
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 2.5e-199 698.7 407 87.7
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 4.3e-199 698.0 402 87.3
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.3e-199 698.0 401 87.8
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.3e-199 698.0 401 87.8
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 9.6e-199 696.8 405 87.4
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 1.3e-198 696.4 402 86.8
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 1.3e-198 696.4 401 86.3
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 2.8e-198 695.3 402 87.1
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 2.8e-198 695.3 402 87.3
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.1e-197 693.3 408 86.0
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 1.1e-197 693.3 371 93.3
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 1.4e-197 693.0 397 87.4
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 4.0e-197 691.4 405 85.9
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 4.0e-197 691.4 422 83.6
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 5.3e-197 691.0 408 85.8
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 6.9e-197 690.6 406 86.2
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 6.9e-197 690.6 406 86.9
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 6.9e-197 690.6 411 86.4
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 9.0e-197 690.3 411 85.9
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.5e-196 689.5 407 85.7
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 2.6e-196 688.7 412 84.7
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 3.4e-196 688.3 402 85.6
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 3.4e-196 688.3 407 86.2
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 5.8e-196 687.6 412 85.0
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 5.8e-196 687.6 406 85.2
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 7.6e-196 687.2 412 84.7
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 7.6e-196 687.2 412 84.7
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 9.9e-196 686.8 412 84.5
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 9.9e-196 686.8 407 86.0
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 1.7e-195 686.0 412 84.7
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 1.7e-195 686.0 408 85.5
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 2.2e-195 685.6 407 86.0
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 2.9e-195 685.3 407 85.7
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 3.8e-195 684.9 412 85.0
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 3.8e-195 684.9 412 85.0
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 3.8e-195 684.9 405 86.7
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 3.8e-195 684.9 405 86.7
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 6.4e-195 684.1 412 84.2
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 1.1e-194 683.3 403 85.6
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 2.4e-194 682.2 412 84.5
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 3.2e-194 681.8 418 84.0
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 4.2e-194 681.4 411 83.9
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 5.4e-194 681.0 406 83.5
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 9.3e-194 680.2 416 83.7
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 2.7e-193 678.7 406 84.5
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 4.6e-193 677.9 405 84.0
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 6.0e-193 677.6 425 82.8
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 6.0e-193 677.6 409 84.6
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.0e-192 676.8 416 82.5
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 1.8e-192 676.0 407 84.3
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 2.3e-192 675.6 406 84.0
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 3.0e-192 675.2 380 87.9
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 6.7e-192 674.1 416 83.2
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 1.1e-191 673.3 409 83.6
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.9e-191 672.5 402 83.6
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 2.5e-191 672.2 405 83.2
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 3.3e-191 671.8 357 92.2
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 3.3e-191 671.8 370 89.5
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 4.3e-191 671.4 408 83.3
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 2.1e-190 669.1 404 84.7
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 3.7e-190 668.3 406 81.5
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 4.8e-190 667.9 423 81.8
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 8.1e-190 667.2 410 83.4
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 4.0e-189 664.8 367 88.3
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 5.3e-189 664.5 411 82.2
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 6.9e-189 664.1 368 88.9
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 4.5e-188 661.4 383 87.5
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 5.8e-188 661.0 409 81.9
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 8.4e-187 657.1 393 84.7
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 1.1e-186 656.8 407 82.3
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 4.2e-186 654.8 407 82.1
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 1.9e-178 629.4 333 91.6
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.3e-176 623.2 408 78.4
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 4.3e-175 618.2 354 84.5
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 2.8e-174 615.5 365 81.4
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.4e-173 613.2 359 81.6
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 4.1e-173 611.7 374 82.9
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 7.7e-172 607.4 410 78.3
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 5.5e-170 601.3 369 78.3
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 8.8e-160 567.4 338 84.0
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 4.8e-158 561.6 400 73.5
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 5.9e-156 554.7 335 84.8
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 6.5e-155 551.2 319 86.2
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 1.1e-149 533.9 357 72.3
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 9.1e-149 530.8 313 85.6
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.2e-145 520.4 353 70.3
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 4.4e-143 511.9 406 69.0
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.3e-142 510.4 306 82.7
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.9e-139 499.2 278 86.3
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 4.2e-138 495.4 345 70.4
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 4.0e-136 488.8 289 87.5
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 5.2e-136 488.4 371 66.6
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 1.3e-131 473.8 302 82.8
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 4.3e-130 468.8 344 66.3
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 6.4e-126 454.9 248 89.1
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 5.2e-120 435.3 275 77.8
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 7.0e-117 424.9 285 76.1
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 2.0e-103 380.2 238 76.9
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 3.5e-100 369.4 319 64.6
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 1.2e-60 238.0 132 87.9
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 1.6e-60 237.7 132 87.1
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 4.2e-53 213.0 359 38.2
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.4e-48 197.2 118 80.5
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 3.1e-48 196.8 118 79.7
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 7.9e-44 182.2 104 87.5
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 5.2e-43 179.5 103 87.4
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 5.2e-43 179.5 103 87.4
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 1.9e-37 161.0 94 85.1
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.0e-35 155.2 101 78.2
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.4e-32 144.8 94 74.5
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 2.2e-30 137.5 97 78.4
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 6.1e-28 129.4 105 69.5
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 2.0e-26 124.4 129 55.8
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.7e-23 114.0 71 71.8
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 2.2e-22 110.9 59 88.1
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.2e-20 105.1 81 67.9
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 1.6e-20 104.8 62 85.5
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 2.8e-20 104.0 47 93.6
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 8.8e-19 99.0 59 83.1
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 5.0e-14 83.2 75 66.7
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.8e-12 77.4 42 90.5
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 1.2e-10 72.0 39 87.2
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 3.5e-07 60.5 53 60.4


User provided reference genes

Program Settings