Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.1e-75 286.6 148 100.0
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 6.1e-58 227.6 148 83.1
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 2.7e-50 202.2 137 75.2
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 2.7e-50 202.2 146 71.2
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 3.6e-50 201.8 142 72.5
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 2.3e-49 199.1 148 70.3
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 4.4e-48 194.9 143 69.2
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 7.5e-48 194.1 147 69.4
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 1.3e-47 193.4 147 68.0
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.7e-47 193.0 147 68.7
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 4.8e-47 191.4 147 68.7
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 4.8e-47 191.4 140 67.1
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.4e-46 189.1 119 79.8
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 4.1e-46 188.3 146 65.1
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 9.1e-46 187.2 144 68.1
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.0e-45 186.0 136 69.1
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 5.0e-44 181.4 137 67.2
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 6.5e-44 181.0 144 66.7
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.1e-43 180.3 147 65.3
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 4.2e-43 178.3 134 65.7
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 4.2e-43 178.3 140 65.0
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 6.1e-42 174.5 146 60.3
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 8.0e-42 174.1 106 84.9
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.0e-41 172.2 140 63.6
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 5.2e-41 171.4 140 64.3
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 5.2e-41 171.4 128 67.2
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 5.2e-41 171.4 142 60.6
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 2.6e-40 169.1 136 64.0
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 4.4e-40 168.3 146 60.3
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 7.5e-40 167.5 130 64.6
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 4.9e-39 164.9 129 62.8
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 6.3e-39 164.5 143 61.5
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.1e-38 163.7 140 61.4
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 1.4e-38 163.3 126 65.9
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.8e-38 162.9 147 61.9
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 1.8e-38 162.9 138 61.6
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 4.1e-38 161.8 129 62.0
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 5.4e-38 161.4 146 60.3
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 7.0e-38 161.0 163 55.8
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 9.2e-38 160.6 138 61.6
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 1.2e-37 160.2 142 59.9
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 1.6e-37 159.8 149 59.1
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 1.6e-37 159.8 141 58.9
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 2.0e-37 159.5 141 58.9
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 2.7e-37 159.1 129 63.6
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 2.7e-37 159.1 138 57.2
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 7.8e-37 157.5 146 59.6
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 3.8e-36 155.2 143 59.4
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 5.0e-36 154.8 136 61.0
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 6.6e-36 154.5 150 56.0
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 1.1e-35 153.7 147 57.1
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.5e-35 153.3 144 61.8
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.5e-35 153.3 155 56.8
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 2.5e-35 152.5 122 63.9
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 2.5e-35 152.5 121 62.8
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 2.5e-35 152.5 119 64.7
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 3.3e-35 152.1 143 56.6
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 4.3e-35 151.8 143 56.6
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 7.3e-35 151.0 131 60.3
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 9.5e-35 150.6 147 53.1
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 1.6e-34 149.8 144 59.0
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 1.6e-34 149.8 136 55.1
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 2.8e-34 149.1 136 56.6
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 3.6e-34 148.7 142 58.5
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 3.6e-34 148.7 130 59.2
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 8.0e-34 147.5 139 57.6
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.0e-33 147.1 129 57.4
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.4e-33 146.7 142 57.0
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 3.0e-33 145.6 144 54.9
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 5.2e-33 144.8 148 54.7
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 2.0e-32 142.9 142 54.9
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.0e-32 142.9 132 56.1
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 3.4e-32 142.1 136 55.9
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 3.4e-32 142.1 133 59.4
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 4.4e-32 141.7 89 76.4
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 5.8e-32 141.4 144 53.5
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 7.5e-32 141.0 140 52.1
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.3e-31 140.2 140 55.0
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.7e-31 139.8 143 55.9
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.7e-31 139.8 161 51.6
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 2.2e-31 139.4 142 54.2
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 3.7e-31 138.7 163 49.7
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 3.7e-31 138.7 133 54.1
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 4.9e-31 138.3 142 54.2
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 8.3e-31 137.5 147 49.7
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 1.4e-30 136.7 141 53.9
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 4.1e-30 135.2 141 51.8
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 4.1e-30 135.2 89 74.2
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 4.1e-30 135.2 132 53.8
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 4.1e-30 135.2 132 53.8
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 5.4e-30 134.8 134 53.0
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 1.2e-29 133.7 152 48.7
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 1.6e-29 133.3 119 59.7
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 2.0e-29 132.9 135 51.9
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 3.5e-29 132.1 152 48.0
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 7.8e-29 131.0 107 57.9
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.0e-28 130.6 118 56.8
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 1.3e-28 130.2 130 53.8
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 8.6e-28 127.5 91 69.2
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 8.6e-28 127.5 83 72.3
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-27 127.1 137 51.1
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-27 127.1 144 48.6
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 2.5e-27 125.9 134 52.2
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 2.5e-27 125.9 134 52.2
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.5e-27 125.9 140 50.7
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 3.3e-27 125.6 136 51.5
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 4.3e-27 125.2 134 51.5
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 4.3e-27 125.2 134 51.5
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 5.6e-27 124.8 138 50.7
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 7.3e-27 124.4 134 50.7
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 7.3e-27 124.4 89 67.4
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 9.5e-27 124.0 135 51.1
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 9.5e-27 124.0 135 51.1
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 1.6e-26 123.2 137 51.1
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 4.7e-26 121.7 113 54.9
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 6.2e-26 121.3 136 48.5
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 8.0e-26 120.9 138 47.8
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.4e-25 120.2 136 47.8
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 1.4e-25 120.2 136 47.8
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 1.4e-25 120.2 90 62.2
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 6.8e-25 117.9 91 60.4
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 8.9e-25 117.5 132 51.5
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 1.2e-24 117.1 137 42.3
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 1.5e-24 116.7 148 44.6
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 2.6e-24 115.9 124 44.4
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 5.8e-24 114.8 72 75.0
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.3e-23 113.6 148 43.9
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.7e-23 113.2 131 46.6
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 2.9e-23 112.5 91 57.1
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 6.4e-23 111.3 148 45.3
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-22 110.5 136 47.8
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 1.1e-22 110.5 136 47.8
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 1.1e-22 110.5 136 47.8
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 2.4e-22 109.4 149 44.3
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 3.2e-22 109.0 148 43.2
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 2.7e-21 105.9 145 42.8
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 7.8e-21 104.4 146 42.5
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 2.3e-20 102.8 94 58.5
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 3.0e-20 102.4 135 46.7
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 8.6e-20 100.9 94 54.3
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 9.5e-19 97.4 70 70.0
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 1.2e-18 97.1 118 45.8
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 1.1e-17 94.0 95 48.4
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 5.2e-17 91.7 146 43.8
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 1.5e-16 90.1 132 43.2
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.9e-15 85.9 53 75.5
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 1.9e-14 83.2 140 35.7
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 2.4e-14 82.8 96 46.9
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 4.1e-14 82.0 148 39.9
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 2.7e-13 79.3 134 39.6
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 3.9e-12 75.5 82 51.2
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 1.9e-11 73.2 90 42.2
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.9e-11 73.2 128 37.5
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 1.4e-09 67.0 68 48.5
Solyc11g007810.3 Solanum lycopersicum HOM05D004569 ORTHO05D005333 1.8e-09 66.6 72 54.2
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.7e-07 60.1 43 65.1
Hma1.2p1_0549F.1_g176960 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 3.2e-06 55.8 37 73.0
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 5.4e-06 55.1 39 66.7


User provided reference genes

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