Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G1248 Trochodendron aralioides HOM05D003032 ORTHO05D003456 1.6e-123 446.0 222 100.0
TAR624G1316 Trochodendron aralioides HOM05D003032 ORTHO05D003456 6.4e-19 98.6 72 66.7
TAR369G0307 Trochodendron aralioides HOM05D001073 ORTHO05D002886 1.9e-18 97.1 60 83.3
Nn1g07285 Nelumbo nucifera HOM05D003032 ORTHO05D003456 3.9e-16 89.4 63 66.7
PSO478G0172 Papaver somniferum HOM05D003032 ORTHO05D003456 5.1e-16 89.0 72 59.7
Sc05g0006770 Simmondsia chinensis HOM05D003032 ORTHO05D003456 1.5e-15 87.4 73 54.8
Aqoxy1G01907 Aquilegia oxysepala HOM05D003032 ORTHO05D003456 3.3e-15 86.3 99 44.4
GSVIVG01021300001 Vitis vinifera HOM05D003032 ORTHO05D003456 4.3e-15 85.9 94 50.0
TAR623G1705 Trochodendron aralioides HOM05D001073 ORTHO05D002886 5.6e-15 85.5 63 69.8
CiPaw.09G133700 Carya illinoinensis HOM05D003032 ORTHO05D003456 7.3e-15 85.1 70 57.1
Thecc.06G161100 Theobroma cacao HOM05D003032 ORTHO05D003456 7.3e-15 85.1 72 55.6
Rhsim11G0122800 Rhododendron simsii HOM05D003032 ORTHO05D003456 9.6e-15 84.7 72 52.8
Dinv12722 Davidia involucrata HOM05D003032 ORTHO05D003456 1.3e-14 84.3 142 38.7
Cc02_g16060 Coffea canephora HOM05D003032 ORTHO05D003456 1.6e-14 84.0 72 54.2
DCAR_027964 Daucus carota HOM05D003032 ORTHO05D003456 1.6e-14 84.0 72 52.8
Hma1.2p1_0336F.1_g129000 Hydrangea macrophylla HOM05D003032 ORTHO05D003456 1.6e-14 84.0 72 55.6
COL.COLO4_22831 Corchorus olitorius HOM05D003032 ORTHO05D003456 2.8e-14 83.2 72 55.6
Manes.17G061800 Manihot esculenta HOM05D003032 ORTHO05D003456 3.6e-14 82.8 72 52.8
Oeu004267.1 Olea europaea HOM05D003032 ORTHO05D003456 3.6e-14 82.8 75 52.0
vmacro10933 Vaccinium macrocarpon HOM05D003032 ORTHO05D003456 3.6e-14 82.8 72 54.2
MSTRG.16186 Avicennia marina HOM05D003032 ORTHO05D003456 6.2e-14 82.0 72 51.4
Migut.M00987 Erythranthe guttata HOM05D003032 ORTHO05D003456 8.1e-14 81.6 72 51.4
EL10Ac8g19853 Beta vulgaris HOM05D003032 ORTHO05D003456 1.4e-13 80.9 72 52.8
Duzib160G0697 Durio zibethinus HOM05D003032 ORTHO05D003456 1.4e-13 80.9 72 52.8
Potri.011G075600 Populus trichocarpa HOM05D003032 ORTHO05D003456 1.4e-13 80.9 72 54.2
Sed0013474 Sechium edule HOM05D003032 ORTHO05D003456 1.4e-13 80.9 72 54.2
Cfa001065 Carpinus fangiana HOM05D003032 ORTHO05D003456 2.4e-13 80.1 72 50.0
Nitab4.5_0000982g0010 Nicotiana tabacum HOM05D003032 ORTHO05D003456 2.4e-13 80.1 72 51.4
ClCG01G024060 Citrullus lanatus HOM05D003032 ORTHO05D003456 3.1e-13 79.7 72 52.8
Lsat_1_v5_gn_7_26960 Lactuca sativa HOM05D003032 ORTHO05D003456 4.0e-13 79.3 72 52.8
Ciclev10016833m.g Citrus clementina HOM05D003032 ORTHO05D003456 5.3e-13 79.0 72 50.0
Prupe.4G070300 Prunus persica HOM05D003032 ORTHO05D003456 5.3e-13 79.0 72 54.2
QL05p052148 Quercus lobata HOM05D003032 ORTHO05D003456 5.3e-13 79.0 72 51.4
Hund21459 Selenicereus undatus HOM05D003032 ORTHO05D003456 5.3e-13 79.0 72 52.8
TWI73G0283 Tripterygium wilfordii HOM05D003032 ORTHO05D003456 5.3e-13 79.0 67 56.7
Eucgr.E02848 Eucalyptus grandis HOM05D003032 ORTHO05D003456 6.9e-13 78.6 72 52.8
MD10G1271300 Malus domestica HOM05D003032 ORTHO05D003456 6.9e-13 78.6 72 54.2
Oeu040942.1 Olea europaea HOM05D003032 ORTHO05D003456 6.9e-13 78.6 72 52.8
CiPaw.09G133800 Carya illinoinensis HOM05D003032 ORTHO05D003456 9.0e-13 78.2 70 52.9
Gohir.A06G122300 Gossypium hirsutum HOM05D003032 ORTHO05D003456 9.0e-13 78.2 72 50.0
Lj1A1178T70 Lonicera japonica HOM05D003032 ORTHO05D003456 9.0e-13 78.2 72 51.4
MELO3C007183.2 Cucumis melo HOM05D003032 ORTHO05D003456 1.2e-12 77.8 72 48.6
Eucgr.E02852 Eucalyptus grandis HOM05D003032 ORTHO05D003456 1.2e-12 77.8 72 51.4
SalBow8G3374 Salvia bowleyana HOM05D003032 ORTHO05D003456 1.2e-12 77.8 72 51.4
Gohir.D06G140200 Gossypium hirsutum HOM05D003032 ORTHO05D003456 1.5e-12 77.4 72 50.0
Gorai.010G163600 Gossypium raimondii HOM05D003032 ORTHO05D003456 1.5e-12 77.4 72 50.0
Sabra11G0062800 Salix brachista HOM05D003032 ORTHO05D003456 2.6e-12 76.6 72 50.0
Nitab4.5_0002507g0070 Nicotiana tabacum HOM05D003032 ORTHO05D003456 3.4e-12 76.3 72 48.6
PGR042G1118 Punica granatum HOM05D003032 ORTHO05D003456 3.4e-12 76.3 72 51.4
Cpa.g.c47569 Carica papaya HOM05D003032 ORTHO05D003456 4.5e-12 75.9 72 51.4
AUR62027657 Chenopodium quinoa HOM05D003032 ORTHO05D003456 4.5e-12 75.9 72 50.0
CsaV3_6G051200 Cucumis sativus L. HOM05D003032 ORTHO05D003456 4.5e-12 75.9 93 43.0
Lalb_Chr07g0186181 Lupinus albus HOM05D003032 ORTHO05D003456 4.5e-12 75.9 72 48.6
Sopen02g020740 Solanum pennellii HOM05D003032 ORTHO05D003456 5.8e-12 75.5 72 44.4
PGSC0003DMG400028444 Solanum tuberosum HOM05D003032 ORTHO05D003456 5.8e-12 75.5 72 44.4
HanXRQChr04g0112231 Helianthus annuus HOM05D003032 ORTHO05D003456 7.6e-12 75.1 69 52.2
PSO713G0030 Papaver somniferum HOM05D001073 ORTHO05D002886 7.6e-12 75.1 54 72.2
Medtr8g087820 Medicago truncatula HOM05D003032 ORTHO05D003456 9.9e-12 74.7 72 50.0
CANSAT35G0490 Cannabis sativa HOM05D003032 ORTHO05D003456 1.3e-11 74.3 67 49.3
Nn2g10604 Nelumbo nucifera HOM05D001073 ORTHO05D002886 1.3e-11 74.3 60 65.0
THA.LOC104798447 Tarenaya hassleriana HOM05D003032 ORTHO05D003456 1.3e-11 74.3 74 47.3
SGA_v2.0_scaffold16G07719 Striga asiatica HOM05D003032 ORTHO05D003456 1.7e-11 73.9 72 45.8
QL05p049864 Quercus lobata HOM05D003032 ORTHO05D003456 2.2e-11 73.6 63 54.0
Sed0002907 Sechium edule HOM05D003032 ORTHO05D003456 2.2e-11 73.6 74 45.9
Sc05g0006760 Simmondsia chinensis HOM05D003032 ORTHO05D003456 2.2e-11 73.6 66 48.5
MD10G1271200 Malus domestica HOM05D003032 ORTHO05D003456 2.9e-11 73.2 74 52.7
Nitab4.5_0005138g0080 Nicotiana tabacum HOM05D003032 ORTHO05D003456 4.9e-11 72.4 72 44.4
Solyc02g071750.3 Solanum lycopersicum HOM05D003032 ORTHO05D003456 4.9e-11 72.4 72 41.7
FAN21G3139 Fragaria x ananassa HOM05D003032 ORTHO05D003456 6.4e-11 72.0 72 47.2
FAN21G3669 Fragaria x ananassa HOM05D003032 ORTHO05D003456 6.4e-11 72.0 72 47.2
FAN25G2432 Fragaria x ananassa HOM05D003032 ORTHO05D003456 6.4e-11 72.0 72 48.6
RcHm_v2.0_Chr5g0012411 Rosa chinensis HOM05D003032 ORTHO05D003456 6.4e-11 72.0 72 45.8
Sabra16G0207000 Salix brachista HOM05D003032 ORTHO05D003456 6.4e-11 72.0 76 50.0
BcaNung04871 Brassica carinata HOM05D003032 ORTHO05D003456 8.4e-11 71.6 66 47.0
Ca_17879_v3 Cicer arietinum L. HOM05D003032 ORTHO05D003456 8.4e-11 71.6 72 45.8
Ciclev10033433m.g Citrus clementina HOM05D001073 ORTHO05D002886 8.4e-11 71.6 54 66.7
Aqoxy1G01906 Aquilegia oxysepala HOM05D003032 ORTHO05D003456 1.1e-10 71.2 93 40.9
ECA236G0712 Erigeron canadensis HOM05D003032 ORTHO05D003456 1.1e-10 71.2 63 52.4
Lj4g0005760 Lotus japonicus HOM05D003032 ORTHO05D003456 1.1e-10 71.2 71 47.9
TAR625G0146 Trochodendron aralioides HOM05D000064 ORTHO05D416217 1.1e-10 71.2 69 55.1
A01p10950 Brassica napus HOM05D001953 ORTHO05D003456 1.4e-10 70.9 66 48.5
C01p12970 Brassica napus HOM05D001953 ORTHO05D003456 1.4e-10 70.9 66 48.5
BolC1t01271H Brassica oleracea HOM05D001953 ORTHO05D003456 1.4e-10 70.9 66 48.5
Sed0025293 Sechium edule HOM05D003032 ORTHO05D003456 1.4e-10 70.9 72 44.4
FvH4_3g06750 Fragaria vesca HOM05D003032 ORTHO05D003456 1.9e-10 70.5 72 45.8
Carub.0007s2226 Capsella rubella HOM05D003032 ORTHO05D003456 2.4e-10 70.1 75 42.7
Peaxi162Scf00047g00922 Petunia axillaris HOM05D003032 ORTHO05D003456 2.4e-10 70.1 73 46.6
Peaxi162Scf01055g00115 Petunia axillaris HOM05D003032 ORTHO05D003456 2.4e-10 70.1 73 46.6
TPR.G6813 Trifolium pratense HOM05D003032 ORTHO05D003456 2.4e-10 70.1 72 47.2
TAR628G0928 Trochodendron aralioides HOM05D000064 ORTHO05D414640 2.4e-10 70.1 56 64.3
TAR633G2656 Trochodendron aralioides HOM05D001073 ORTHO05D002886 2.4e-10 70.1 60 63.3
Actinidia13842 Actinidia chinensis HOM05D001073 ORTHO05D002886 3.2e-10 69.7 81 51.9
Psat7g066960 Pisum sativum HOM05D003032 ORTHO05D003456 3.2e-10 69.7 72 48.6
Sp7g17640 Schrenkiella parvula HOM05D003032 ORTHO05D003456 3.2e-10 69.7 65 47.7
arahy.Tifrunner.gnm1.ann1.H1W4M4 Arachis hypogaea HOM05D003032 ORTHO05D003456 4.2e-10 69.3 77 44.2
arahy.Tifrunner.gnm1.ann1.KAT3SX Arachis hypogaea HOM05D003032 ORTHO05D003456 4.2e-10 69.3 77 44.2
Haze_05444 Corylus avellana HOM05D003032 ORTHO05D003456 5.4e-10 68.9 72 47.2
Nitab4.5_0007204g0010 Nicotiana tabacum HOM05D003032 ORTHO05D003456 5.4e-10 68.9 73 45.2
QL05p052162 Quercus lobata HOM05D003032 ORTHO05D003456 5.4e-10 68.9 65 52.3
BcaC09g51459 Brassica carinata HOM05D001953 ORTHO05D003456 7.1e-10 68.6 66 47.0
Oeu041756.1 Olea europaea HOM05D003032 ORTHO05D003456 7.1e-10 68.6 79 43.0
AL7G35230 Arabidopsis lyrata HOM05D003032 ORTHO05D003456 9.3e-10 68.2 69 44.9
unitig_748.g7642 Utricularia gibba HOM05D003032 ORTHO05D003456 9.3e-10 68.2 67 47.8
CARHR225820 Cardamine hirsuta HOM05D003032 ORTHO05D003456 1.6e-09 67.4 72 43.1
Potri.001G324500 Populus trichocarpa HOM05D003032 ORTHO05D003456 1.6e-09 67.4 76 47.4
FAN11G3274 Fragaria x ananassa HOM05D003032 ORTHO05D003456 2.1e-09 67.0 72 44.4
Nn2g12954 Nelumbo nucifera HOM05D001073 ORTHO05D002886 2.7e-09 66.6 57 63.2
ATR0594G076 Amborella trichopoda HOM05D001073 ORTHO05D002886 3.5e-09 66.2 58 63.8
Peaxi162Scf00022g00037 Petunia axillaris HOM05D003032 ORTHO05D003456 3.5e-09 66.2 72 41.7
Thhalv10026371m.g Eutrema salsugineum HOM05D003032 ORTHO05D003456 4.6e-09 65.9 92 38.0
Solyc03g005930.3 Solanum lycopersicum HOM05D003032 ORTHO05D003456 6.0e-09 65.5 73 41.1
Sopen03g001940 Solanum pennellii HOM05D003032 ORTHO05D003456 6.0e-09 65.5 73 41.1
COL.COLO4_08206 Corchorus olitorius HOM05D001073 ORTHO05D002886 1.0e-08 64.7 55 60.0
Duzib128G1496 Durio zibethinus HOM05D001073 ORTHO05D002886 1.0e-08 64.7 79 46.8
Carub.0007s2225 Capsella rubella HOM05D003032 ORTHO05D003456 1.3e-08 64.3 69 44.9
CARHR225810 Cardamine hirsuta HOM05D003032 ORTHO05D003456 1.3e-08 64.3 66 42.4
AT4G18930 Arabidopsis thaliana HOM05D003032 ORTHO05D003456 1.8e-08 63.9 69 43.5
Aqoxy4G00103 Aquilegia oxysepala HOM05D003032 ORTHO05D003456 2.3e-08 63.5 70 42.9
CDE02G4586 Ceratophyllum demersum HOM05D003032 ORTHO05D003456 2.3e-08 63.5 131 33.6
AUR62035853 Chenopodium quinoa HOM05D003032 ORTHO05D003456 2.3e-08 63.5 55 50.9
AUR62044133 Chenopodium quinoa HOM05D003032 ORTHO05D003456 2.3e-08 63.5 55 50.9
Thhalv10026357m.g Eutrema salsugineum HOM05D003032 ORTHO05D003456 2.3e-08 63.5 92 38.0
Thhalv10026969m.g Eutrema salsugineum HOM05D003032 ORTHO05D003456 2.3e-08 63.5 72 41.7
CAN.G411.4 Capsicum annuum HOM05D003032 ORTHO05D003456 3.0e-08 63.2 71 40.8
PSO384G3416 Papaver somniferum HOM05D001073 ORTHO05D002886 3.0e-08 63.2 54 66.7
FAN16G0417 Fragaria x ananassa HOM05D003032 ORTHO05D003456 3.9e-08 62.8 72 43.1
Lj1A928T59 Lonicera japonica HOM05D001073 ORTHO05D002886 3.9e-08 62.8 54 64.8
VMungo0251G3180 Vigna mungo HOM05D003032 ORTHO05D003456 3.9e-08 62.8 64 48.4
Potri.017G062400 Populus trichocarpa HOM05D003032 ORTHO05D003456 5.1e-08 62.4 69 47.8
Sabra17G0056300 Salix brachista HOM05D003032 ORTHO05D003456 8.7e-08 61.6 69 46.4
EL10Ac8g19854 Beta vulgaris HOM05D003032 ORTHO05D003456 1.1e-07 61.2 70 44.3
Dinv25933 Davidia involucrata HOM05D000657 ORTHO05D002886 1.1e-07 61.2 69 52.2
Manes.07G105100 Manihot esculenta HOM05D001073 ORTHO05D002886 1.1e-07 61.2 54 61.1
CSS0022910 Camellia sinensis var. sinensis HOM05D003032 ORTHO05D003456 1.5e-07 60.8 72 43.1
AUR62027659 Chenopodium quinoa HOM05D003032 ORTHO05D003456 1.9e-07 60.5 72 41.7
Phvul.002G243100 Phaseolus vulgaris HOM05D003032 ORTHO05D003456 1.9e-07 60.5 72 43.1
ATR0602G011 Amborella trichopoda HOM05D003032 ORTHO05D003456 2.5e-07 60.1 72 44.4
BcaB04g18509 Brassica carinata HOM05D003032 ORTHO05D003456 2.5e-07 60.1 81 34.6
FvH4_1g19120 Fragaria vesca HOM05D003032 ORTHO05D003456 2.5e-07 60.1 68 42.6
TWI09G1589 Tripterygium wilfordii HOM05D003032 ORTHO05D003456 2.5e-07 60.1 60 48.3
Aqoxy4G03161 Aquilegia oxysepala HOM05D001073 ORTHO05D002886 4.3e-07 59.3 55 65.5
RcHm_v2.0_Chr3g0461521 Rosa chinensis HOM05D003032 ORTHO05D003456 4.3e-07 59.3 73 39.7
QL08p057302 Quercus lobata HOM05D001073 ORTHO05D002886 5.6e-07 58.9 56 51.8
AUR62035858 Chenopodium quinoa HOM05D003032 ORTHO05D003456 7.4e-07 58.5 72 41.7
Gohir.A05G343600 Gossypium hirsutum HOM05D001073 ORTHO05D002886 7.4e-07 58.5 56 55.4
GSVIVG01032644001 Vitis vinifera HOM05D001073 ORTHO05D002886 7.4e-07 58.5 60 53.3
Glyma.05G163100 Glycine max HOM05D003032 ORTHO05D003456 9.6e-07 58.2 72 38.9
HPP92_006379 Vanilla planifolia HOM05D003032 ORTHO05D003456 9.6e-07 58.2 72 38.9
Cfa001066 Carpinus fangiana HOM05D003032 ORTHO05D003456 1.6e-06 57.4 52 51.9
RcHm_v2.0_Chr3g0456931 Rosa chinensis HOM05D003032 ORTHO05D003456 2.8e-06 56.6 74 33.8
SEGI_13714 Sequoiadendron giganteum HOM05D003032 ORTHO05D003456 2.8e-06 56.6 67 40.3
AT4G18940 Arabidopsis thaliana HOM05D003032 ORTHO05D003456 3.6e-06 56.2 74 37.8
EL10Ac8g19855 Beta vulgaris HOM05D003032 ORTHO05D003456 3.6e-06 56.2 54 46.3
Carub.0007s2224 Capsella rubella HOM05D003032 ORTHO05D003456 4.8e-06 55.8 76 36.8
CAN.G1537.16 Capsicum annuum HOM05D003032 ORTHO05D003456 4.8e-06 55.8 73 38.4
Duzib114G0232 Durio zibethinus HOM05D001073 ORTHO05D002886 4.8e-06 55.8 76 44.7
RcHm_v2.0_Chr2g0110231 Rosa chinensis HOM05D003032 ORTHO05D003456 4.8e-06 55.8 73 38.4
Prupe.6G318900 Prunus persica HOM05D003032 ORTHO05D003456 6.2e-06 55.5 72 36.1
AUR62035859 Chenopodium quinoa HOM05D003032 ORTHO05D003456 8.1e-06 55.1 66 42.4
FvH4_1g19142 Fragaria vesca HOM05D003032 ORTHO05D003456 8.1e-06 55.1 68 39.7
Thecc.10G064700 Theobroma cacao HOM05D001073 ORTHO05D002886 8.1e-06 55.1 55 52.7


User provided reference genes

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