Gene: AT4G18930
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G18930
- Transcript Identifier AT4G18930.1
- Gene Type Coding gene
- Location Chr4 : 10370797-10371885 : positive
Gene Family Information
- ID HOM05D003032
- #Genes/#Species 227/95
- Phylogenetic origin
- ID ORTHO05D003456
- #Genes/#Species 223/95
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT4G18930.1
- uniprot O04147
Descriptions
- Description RNA ligase/cyclic nucleotide phosphodiesterase family protein
- Computational description RNA ligase/cyclic nucleotide phosphodiesterase family protein; CONTAINS InterPro DOMAIN/s: RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), 2',3'-cyclic-nucleotide 3'-phosphodiesterase (InterPro:IPR012386); BEST Arabidopsis thaliana protein match is: RNA ligase/cyclic nucleotide phosphodiesterase family protein (TAIR:AT4G18940.1); Has 112 Blast hits to 112 proteins in 29 species: Archae - 3; Bacteria - 12; Metazoa - 0; Fungi - 8; Plants - 58; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006388 | TAS | Gene Ontology | tRNA splicing, via endonucleolytic cleavage and ligation | 1 |
| GO:0009187 | IBA | Gene Ontology | cyclic nucleotide metabolic process | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004112 | IEA | GOA Database | cyclic-nucleotide phosphodiesterase activity | |
| GO:0004112 | IDA | Gene Ontology | cyclic-nucleotide phosphodiesterase activity | 1 |
| GO:0004112 | IEA | InterPro | cyclic-nucleotide phosphodiesterase activity | |
| GO:0004113 | IBA | Gene Ontology | 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity | 2 |
| GO:0016787 | IEA | GOA Database | hydrolase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IDA ISM | Gene Ontology | cytoplasm | 1 |
| GO:0005829 | HDA | Gene Ontology | cytosol | 3 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |