Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0861 Trochodendron aralioides HOM05D001999 ORTHO05D001994 1.5e-95 352.8 173 100.0
TAR633G2461 Trochodendron aralioides HOM05D001999 ORTHO05D001994 3.2e-74 282.0 162 84.6
TAR636G1732 Trochodendron aralioides HOM05D001999 ORTHO05D001994 4.6e-65 251.5 164 78.7
Nn4g25807 Nelumbo nucifera HOM05D001999 ORTHO05D001994 5.6e-63 244.6 163 77.3
TAR365G1043 Trochodendron aralioides HOM05D001999 ORTHO05D001994 5.7e-55 218.0 151 72.2
Nn3g21468 Nelumbo nucifera HOM05D001999 ORTHO05D001994 1.1e-53 213.8 151 72.8
Aqoxy2G02961 Aquilegia oxysepala HOM05D001999 ORTHO05D001994 2.9e-51 205.7 163 67.5
Dinv40334 Davidia involucrata HOM05D001999 ORTHO05D001994 7.1e-50 201.1 154 68.8
Thecc.05G313600 Theobroma cacao HOM05D001999 ORTHO05D001994 2.3e-48 196.1 155 67.1
Prupe.6G320100 Prunus persica HOM05D001999 ORTHO05D001994 8.7e-48 194.1 155 65.2
Aqoxy5G00748 Aquilegia oxysepala HOM05D001999 ORTHO05D001994 3.3e-47 192.2 174 63.2
QL03p020135 Quercus lobata HOM05D001999 ORTHO05D001994 7.4e-47 191.0 157 66.2
MD04G1199600 Malus domestica HOM05D001999 ORTHO05D001994 1.6e-46 189.9 155 63.9
Haze_04134 Corylus avellana HOM05D001999 ORTHO05D001994 4.8e-46 188.3 154 63.0
FAN05G1277 Fragaria x ananassa HOM05D001999 ORTHO05D001994 8.2e-46 187.6 155 63.2
PSO170G6103 Papaver somniferum HOM05D001999 ORTHO05D001994 8.2e-46 187.6 176 62.5
Dinv30819 Davidia involucrata HOM05D001999 ORTHO05D001994 1.4e-45 186.8 155 65.2
Duzib177G1061 Durio zibethinus HOM05D001999 ORTHO05D001994 1.4e-45 186.8 155 63.9
MD12G1212400 Malus domestica HOM05D001999 ORTHO05D001994 1.8e-45 186.4 154 62.3
PSO210G6703 Papaver somniferum HOM05D001999 ORTHO05D001994 1.8e-45 186.4 176 63.1
Solyc01g099790.3 Solanum lycopersicum HOM05D001999 ORTHO05D001994 2.4e-45 186.0 164 61.6
Sopen01g043310 Solanum pennellii HOM05D001999 ORTHO05D001994 2.4e-45 186.0 164 61.6
CiPaw.08G161600 Carya illinoinensis HOM05D001999 ORTHO05D001994 3.1e-45 185.7 155 65.2
PGSC0003DMG400024717 Solanum tuberosum HOM05D001999 ORTHO05D001994 3.1e-45 185.7 164 61.6
FAN09G2669 Fragaria x ananassa HOM05D001999 ORTHO05D001994 4.1e-45 185.3 155 63.9
FvH4_6g06620 Fragaria vesca HOM05D001999 ORTHO05D001994 9.0e-45 184.1 155 62.6
Cfa006634 Carpinus fangiana HOM05D001999 ORTHO05D001994 2.0e-44 183.0 154 62.3
FAN14G1734 Fragaria x ananassa HOM05D001999 ORTHO05D001994 2.6e-44 182.6 155 61.9
RcHm_v2.0_Chr3g0455821 Rosa chinensis HOM05D001999 ORTHO05D001994 2.6e-44 182.6 155 63.2
Peaxi162Scf00037g01221 Petunia axillaris HOM05D001999 ORTHO05D001994 5.9e-44 181.4 164 61.0
CiPaw.07G022200 Carya illinoinensis HOM05D001999 ORTHO05D001994 7.7e-44 181.0 153 62.7
Cc02_g34200 Coffea canephora HOM05D001999 ORTHO05D001994 2.9e-43 179.1 155 62.6
FAN02G3011 Fragaria x ananassa HOM05D001999 ORTHO05D001994 5.0e-43 178.3 154 62.3
CSS0044976 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 8.5e-43 177.6 156 62.8
CSS0046081 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 8.5e-43 177.6 156 62.8
Gorai.013G205600 Gossypium raimondii HOM05D001999 ORTHO05D001994 2.5e-42 176.0 156 62.2
Gorai.007G300400 Gossypium raimondii HOM05D001999 ORTHO05D001994 3.2e-42 175.6 155 61.3
Nitab4.5_0010216g0020 Nicotiana tabacum HOM05D001999 ORTHO05D001994 3.2e-42 175.6 164 59.8
Actinidia35557 Actinidia chinensis HOM05D001999 ORTHO05D001994 5.5e-42 174.9 154 62.3
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 5.5e-42 174.9 155 63.2
Gohir.D13G180200 Gossypium hirsutum HOM05D001999 ORTHO05D001994 5.5e-42 174.9 156 62.2
PSO832G2288 Papaver somniferum HOM05D001999 ORTHO05D001994 1.2e-41 173.7 159 59.7
CSS0018606 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 2.1e-41 172.9 156 64.7
CSS0039587 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 2.1e-41 172.9 156 64.7
PSO210G5200 Papaver somniferum HOM05D001999 ORTHO05D001994 1.8e-40 169.9 158 57.0
Cpa.g.sc327.4 Carica papaya HOM05D001999 ORTHO05D001994 2.3e-40 169.5 157 60.5
Actinidia19777 Actinidia chinensis HOM05D001999 ORTHO05D001994 3.0e-40 169.1 154 61.7
Manes.08G117000 Manihot esculenta HOM05D001999 ORTHO05D001994 3.0e-40 169.1 155 61.9
Actinidia21498 Actinidia chinensis HOM05D001999 ORTHO05D001994 1.1e-39 167.2 154 61.0
Atru.chr2.75 Acer truncatum HOM05D001999 ORTHO05D001994 2.2e-38 162.9 149 59.1
Rhsim05G0138600 Rhododendron simsii HOM05D001999 ORTHO05D001994 2.8e-38 162.5 157 61.1
Glyma.10G151500 Glycine max HOM05D001999 ORTHO05D001994 3.7e-38 162.2 154 57.1
Gohir.A13G174400 Gossypium hirsutum HOM05D001999 ORTHO05D001994 4.8e-38 161.8 156 59.0
Ciclev10001227m.g Citrus clementina HOM05D001999 ORTHO05D001994 1.4e-37 160.2 164 56.7
Phvul.007G197300 Phaseolus vulgaris HOM05D001999 ORTHO05D001994 1.4e-37 160.2 154 56.5
Potri.013G015600 Populus trichocarpa HOM05D001999 ORTHO05D001994 5.3e-37 158.3 164 57.9
Potri.005G024700 Populus trichocarpa HOM05D001999 ORTHO05D001994 3.4e-36 155.6 154 59.1
Gohir.A13G109800 Gossypium hirsutum HOM05D001999 ORTHO05D001994 4.5e-36 155.2 156 55.8
Peaxi162Scf00071g00544 Petunia axillaris HOM05D001999 ORTHO05D001994 5.9e-36 154.8 155 58.1
Sabra13G0013700 Salix brachista HOM05D001999 ORTHO05D001994 1.3e-35 153.7 163 55.8
Sabra13G0017800 Salix brachista HOM05D001999 ORTHO05D001994 1.3e-35 153.7 163 55.8
Psat0s1500g0040 Pisum sativum HOM05D001999 ORTHO05D001994 2.9e-35 152.5 154 55.2
AUR62000756 Chenopodium quinoa HOM05D001999 ORTHO05D001994 1.4e-34 150.2 155 58.1
arahy.Tifrunner.gnm1.ann1.J3YIB3 Arachis hypogaea HOM05D001999 ORTHO05D001994 1.9e-34 149.8 155 56.8
Gorai.013G126200 Gossypium raimondii HOM05D001999 ORTHO05D001994 1.9e-34 149.8 156 54.5
arahy.Tifrunner.gnm1.ann1.AWF533 Arachis hypogaea HOM05D001999 ORTHO05D001994 3.2e-34 149.1 155 56.8
Gohir.D13G112400 Gossypium hirsutum HOM05D001999 ORTHO05D001994 3.2e-34 149.1 158 53.8
Nitab4.5_0003844g0010 Nicotiana tabacum HOM05D001999 ORTHO05D001994 3.2e-34 149.1 151 58.3
PGR083G1363 Punica granatum HOM05D001999 ORTHO05D001994 3.2e-34 149.1 158 53.8
TWI36G1062 Tripterygium wilfordii HOM05D001999 ORTHO05D001994 3.2e-34 149.1 156 54.5
Medtr1g083390 Medicago truncatula HOM05D001999 ORTHO05D001994 5.5e-34 148.3 154 54.5
vmacro19742 Vaccinium macrocarpon HOM05D001999 ORTHO05D001994 7.2e-34 147.9 157 57.3
CsaV3_1G038740 Cucumis sativus L. HOM05D001999 ORTHO05D001994 9.4e-34 147.5 154 57.1
Manes.09G170900 Manihot esculenta HOM05D001999 ORTHO05D001994 2.1e-33 146.4 142 58.5
Oeu043739.1 Olea europaea HOM05D001999 ORTHO05D001994 2.1e-33 146.4 152 56.6
ClCG03G017310 Citrullus lanatus HOM05D001999 ORTHO05D001994 2.7e-33 146.0 154 56.5
TPR.G17700 Trifolium pratense HOM05D001999 ORTHO05D001994 2.7e-33 146.0 154 53.9
AUR62005212 Chenopodium quinoa HOM05D001999 ORTHO05D001994 3.6e-33 145.6 155 56.8
arahy.Tifrunner.gnm1.ann1.9XGC9Z Arachis hypogaea HOM05D001999 ORTHO05D001994 6.1e-33 144.8 155 54.2
Lj5g0002371 Lotus japonicus HOM05D001999 ORTHO05D001994 6.1e-33 144.8 154 53.2
Sabra05G0030100 Salix brachista HOM05D001999 ORTHO05D001994 6.1e-33 144.8 157 54.8
arahy.Tifrunner.gnm1.ann1.65M59H Arachis hypogaea HOM05D001999 ORTHO05D001994 1.4e-32 143.7 155 53.5
Sed0027191 Sechium edule HOM05D001999 ORTHO05D001994 1.8e-32 143.3 154 57.8
EL10Ac4g09908 Beta vulgaris HOM05D001999 ORTHO05D001994 3.0e-32 142.5 155 58.7
TWI56G0125 Tripterygium wilfordii HOM05D001999 ORTHO05D001994 5.1e-32 141.7 156 53.2
Sed0011984 Sechium edule HOM05D001999 ORTHO05D001994 8.8e-32 141.0 150 56.0
Dinv33049 Davidia involucrata HOM05D001999 ORTHO05D001994 1.1e-31 140.6 146 52.1
Hund07102 Selenicereus undatus HOM05D001999 ORTHO05D001994 2.0e-31 139.8 154 53.2
Ca_10133_v3 Cicer arietinum L. HOM05D001999 ORTHO05D001994 3.3e-31 139.0 167 49.7
MBI19_g13195_MAGBIO Magnolia biondii HOM05D001999 ORTHO05D001994 4.4e-31 138.7 168 53.0
Lalb_Chr21g0310571 Lupinus albus HOM05D001999 ORTHO05D001994 5.7e-31 138.3 156 53.2
QL12p027615 Quercus lobata HOM05D001999 ORTHO05D001994 4.8e-30 135.2 144 47.9
Glyma.03G235100 Glycine max HOM05D001999 ORTHO05D001994 1.8e-29 133.3 154 51.9
Glyma.19G232800 Glycine max HOM05D001999 ORTHO05D001994 2.4e-29 132.9 154 51.3
GSVIVG01031134001 Vitis vinifera HOM05D001999 ORTHO05D001994 2.4e-29 132.9 155 51.0
GSVIVG01028007001 Vitis vinifera HOM05D001999 ORTHO05D001994 5.3e-29 131.7 142 50.7
Atru.chr5.1156 Acer truncatum HOM05D001999 ORTHO05D001994 7.0e-29 131.3 146 49.3
DCAR_003361 Daucus carota HOM05D001999 ORTHO05D001994 1.5e-28 130.2 155 47.7
Glyma.20G236700 Glycine max HOM05D001999 ORTHO05D001994 1.5e-28 130.2 153 48.4
TPR.G33183 Trifolium pratense HOM05D001999 ORTHO05D001994 2.0e-28 129.8 157 48.4
DCAR_022143 Daucus carota HOM05D001999 ORTHO05D001994 2.6e-28 129.4 156 46.8
Lalb_Chr06g0167721 Lupinus albus HOM05D001999 ORTHO05D001994 4.5e-28 128.6 154 50.6
MSTRG.27977 Avicennia marina HOM05D001999 ORTHO05D001994 7.7e-28 127.9 155 52.9
Lj5C391G14 Lonicera japonica HOM05D001999 ORTHO05D001994 7.7e-28 127.9 135 52.6
Lalb_Chr02g0148101 Lupinus albus HOM05D001999 ORTHO05D001994 7.7e-28 127.9 154 48.1
Phvul.006G089200 Phaseolus vulgaris HOM05D001999 ORTHO05D001994 7.7e-28 127.9 154 50.0
Ca_05796_v3 Cicer arietinum L. HOM05D001999 ORTHO05D001994 1.0e-27 127.5 153 47.1
CSS0032431 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 1.7e-27 126.7 131 49.6
Ah.04g161170 Amaranthus hybridus HOM05D001999 ORTHO05D001994 3.8e-27 125.6 136 58.8
Eucgr.B01912 Eucalyptus grandis HOM05D001999 ORTHO05D001994 6.5e-27 124.8 150 52.0
Sc16g0008800 Simmondsia chinensis HOM05D001999 ORTHO05D001994 1.1e-26 124.0 156 51.9
VMungo0540G0393 Vigna mungo HOM05D001999 ORTHO05D001994 1.1e-26 124.0 154 48.7
PGR031G0021 Punica granatum HOM05D001999 ORTHO05D001994 1.9e-26 123.2 148 48.6
Lalb_Chr15g0077401 Lupinus albus HOM05D001999 ORTHO05D001994 3.2e-26 122.5 163 46.6
MSTRG.16390 Avicennia marina HOM05D001999 ORTHO05D001994 2.1e-25 119.8 153 50.3
Haze_04921 Corylus avellana HOM05D001999 ORTHO05D001994 2.1e-25 119.8 146 45.2
Lj9C146G5 Lonicera japonica HOM05D001999 ORTHO05D001994 2.1e-25 119.8 160 51.9
Gohir.A11G268300 Gossypium hirsutum HOM05D001999 ORTHO05D001994 1.4e-24 117.1 155 47.7
Haze_04925 Corylus avellana HOM05D001999 ORTHO05D001994 1.8e-24 116.7 146 44.5
CANSAT54G0146 Cannabis sativa HOM05D001999 ORTHO05D001994 2.3e-24 116.3 156 46.8
Psat0s1830g0240 Pisum sativum HOM05D001999 ORTHO05D001994 5.2e-24 115.2 158 46.2
Gohir.D11G278200 Gossypium hirsutum HOM05D001999 ORTHO05D001994 1.1e-23 114.0 155 47.1
Lalb_Chr18g0045791 Lupinus albus HOM05D001999 ORTHO05D001994 3.3e-23 112.5 158 46.2
Ciclev10020382m.g Citrus clementina HOM05D001999 ORTHO05D001994 7.5e-23 111.3 146 43.8
Medtr7g112740 Medicago truncatula HOM05D001999 ORTHO05D001994 9.7e-23 110.9 157 43.3
Hma1.2p1_0209F.1_g088440 Hydrangea macrophylla HOM05D001999 ORTHO05D001994 3.7e-22 109.0 151 41.7
Hund21714 Selenicereus undatus HOM05D001999 ORTHO05D001994 4.8e-22 108.6 155 46.5
arahy.Tifrunner.gnm1.ann1.5G7CV2 Arachis hypogaea HOM05D001999 ORTHO05D001994 8.2e-22 107.8 152 44.1
CiPaw.07G107800 Carya illinoinensis HOM05D001999 ORTHO05D001994 1.4e-21 107.1 140 42.1
Oeu043342.1 Olea europaea HOM05D001999 ORTHO05D001994 1.8e-21 106.7 155 46.5
Ah.06g189850 Amaranthus hybridus HOM05D000145 ORTHO05D001994 1.6e-20 103.6 155 47.1
Lj1g0010414 Lotus japonicus HOM05D001999 ORTHO05D001994 1.6e-20 103.6 154 46.8
SGA_v2.0_scaffold81G26096 Striga asiatica HOM05D001999 ORTHO05D001994 2.6e-20 102.8 161 46.0
DCAR_002825 Daucus carota HOM05D001999 ORTHO05D001994 5.9e-20 101.7 130 45.4
Lj1A26T29 Lonicera japonica HOM05D001999 ORTHO05D001994 1.7e-19 100.1 137 42.3
Thecc.01G299000 Theobroma cacao HOM05D001999 ORTHO05D001994 5.0e-19 98.6 143 42.7
Rhsim13G0010900 Rhododendron simsii HOM05D001999 ORTHO05D001994 6.5e-19 98.2 156 42.9
arahy.Tifrunner.gnm1.ann1.XS7LB4 Arachis hypogaea HOM05D001999 ORTHO05D001994 1.1e-18 97.4 152 43.4
HanXRQChr05g0136211 Helianthus annuus HOM05D001999 ORTHO05D001994 1.5e-18 97.1 157 48.4
Duzib133G0338 Durio zibethinus HOM05D001999 ORTHO05D001994 7.2e-18 94.7 144 42.4
Duzib128G0926 Durio zibethinus HOM05D001999 ORTHO05D001994 9.4e-18 94.4 80 62.5
Duzib138G0033 Durio zibethinus HOM05D001999 ORTHO05D001994 9.4e-18 94.4 139 44.6
Duzib211G0185 Durio zibethinus HOM05D001999 ORTHO05D001994 9.4e-18 94.4 148 42.6
vmacro02456 Vaccinium macrocarpon HOM05D001999 ORTHO05D001994 1.2e-17 94.0 140 45.7
Lj5C390T4 Lonicera japonica HOM05D001999 ORTHO05D001994 2.1e-17 93.2 93 59.1
Lj5A389T59 Lonicera japonica HOM05D001999 ORTHO05D001994 2.7e-17 92.8 79 64.6
COL.COLO4_23356 Corchorus olitorius HOM05D001999 ORTHO05D001994 1.0e-16 90.9 150 39.3
Oeu045901.1 Olea europaea HOM05D001999 ORTHO05D001994 1.0e-16 90.9 167 41.9
Rhsim01G0284400 Rhododendron simsii HOM05D001999 ORTHO05D001994 5.2e-16 88.6 135 38.5
ECA236G3557 Erigeron canadensis HOM05D001999 ORTHO05D001994 2.6e-15 86.3 153 44.4
Actinidia24828 Actinidia chinensis HOM05D001999 ORTHO05D001994 7.5e-15 84.7 130 42.3
Lj5C396G7 Lonicera japonica HOM05D001999 ORTHO05D001994 7.5e-15 84.7 85 56.5
Gohir.A08G117700 Gossypium hirsutum HOM05D001999 ORTHO05D001994 9.8e-15 84.3 138 42.0
Gorai.004G142300 Gossypium raimondii HOM05D001999 ORTHO05D001994 9.8e-15 84.3 140 40.7
CANSAT25G1967 Cannabis sativa HOM05D001999 ORTHO05D001994 1.3e-14 84.0 148 35.8
CANSAT25G3193 Cannabis sativa HOM05D001999 ORTHO05D001994 1.3e-14 84.0 148 35.8
Gohir.D08G138700 Gossypium hirsutum HOM05D001999 ORTHO05D001994 3.7e-14 82.4 138 40.6
HPP92_028335 Vanilla planifolia HOM05D001999 ORTHO05D001994 1.8e-13 80.1 144 43.1
SGA_v2.0_scaffold80G25894 Striga asiatica HOM05D001999 ORTHO05D001994 3.1e-13 79.3 161 39.1
HanXRQChr11g0339901 Helianthus annuus HOM05D001999 ORTHO05D001994 1.6e-12 77.0 163 39.3
Oeu010920.1 Olea europaea HOM05D001999 ORTHO05D001994 1.6e-12 77.0 155 42.6
MBI07_g11060_MAGBIO Magnolia biondii HOM05D001999 ORTHO05D001994 1.1e-10 70.9 173 34.1
Os05g0154600 Oryza sativa ssp. japonica HOM05D001999 ORTHO05D001994 1.6e-09 67.0 163 35.6
Zm00001eb131520 Zea mays HOM05D001999 ORTHO05D001994 1.0e-08 64.3 112 35.7
CDE02G0401 Ceratophyllum demersum HOM05D001999 ORTHO05D001994 3.0e-08 62.8 60 50.0
Zm00001eb346030 Zea mays HOM05D001999 ORTHO05D001994 5.2e-08 62.0 155 34.8
Lsat_1_v5_gn_7_72040 Lactuca sativa HOM05D001999 ORTHO05D001994 8.8e-08 61.2 160 38.1
Sp3g04390 Schrenkiella parvula HOM05D001999 ORTHO05D001994 8.8e-08 61.2 153 35.9
THA.LOC104818723 Tarenaya hassleriana HOM05D001999 ORTHO05D001994 1.2e-07 60.8 158 37.3
Zm00001eb282730 Zea mays HOM05D001999 ORTHO05D001994 2.6e-07 59.7 129 34.9
Actinidia21053 Actinidia chinensis HOM05D001999 ORTHO05D001994 4.9e-06 55.5 99 40.4
Os01g0350900 Oryza sativa ssp. japonica HOM05D001999 ORTHO05D001994 4.9e-06 55.5 93 40.9
AL3G16160 Arabidopsis lyrata HOM05D001999 ORTHO05D001994 6.3e-06 55.1 155 33.5
AT3G05545 Arabidopsis thaliana HOM05D001999 ORTHO05D001994 8.3e-06 54.7 155 33.5


User provided reference genes

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