Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 3.2e-255 884.8 521 100.0
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 2.2e-203 712.6 524 80.5
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 3.8e-203 711.8 524 80.5
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 5.3e-197 691.4 520 72.9
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 2.9e-195 685.6 520 67.3
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 2.3e-184 649.4 524 64.7
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 6.7e-184 647.9 521 63.7
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 1.3e-182 643.7 524 63.4
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 3.7e-182 642.1 521 64.9
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 3.7e-182 642.1 525 65.1
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 3.1e-181 639.0 521 62.6
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 6.9e-181 637.9 520 64.8
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 6.9e-181 637.9 521 63.1
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 1.2e-180 637.1 521 65.6
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 2.0e-180 636.3 527 71.5
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 2.6e-180 636.0 524 61.8
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 7.6e-180 634.4 544 70.0
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 6.4e-179 631.3 519 71.3
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 6.4e-179 631.3 490 75.3
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.4e-178 630.2 525 64.8
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 2.5e-178 629.4 525 64.4
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 2.7e-177 625.9 524 61.3
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 3.5e-177 625.5 520 63.3
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 3.5e-177 625.5 516 71.7
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 4.6e-177 625.2 516 71.7
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 1.3e-176 623.6 516 71.7
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 1.8e-176 623.2 518 71.2
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 2.3e-176 622.9 543 63.5
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 3.9e-176 622.1 516 71.1
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 1.1e-175 620.5 522 71.3
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 1.5e-175 620.2 518 71.4
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 1.5e-175 620.2 518 70.8
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 1.5e-175 620.2 525 69.3
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 3.3e-175 619.0 521 70.4
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 5.6e-175 618.2 518 71.4
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 5.6e-175 618.2 525 60.4
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 2.1e-174 616.3 525 63.8
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 2.8e-174 615.9 525 60.4
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 4.8e-174 615.1 526 70.2
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 4.8e-174 615.1 526 60.1
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 4.8e-174 615.1 518 71.0
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 6.2e-174 614.8 517 70.6
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 1.1e-173 614.0 543 62.2
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 2.4e-173 612.8 526 70.0
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 6.9e-173 611.3 517 72.9
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 1.5e-172 610.1 518 61.0
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 2.0e-172 609.8 517 72.5
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 8.4e-171 604.4 524 71.8
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 2.5e-170 602.8 529 68.6
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 4.2e-170 602.1 538 68.2
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 1.3e-168 597.0 527 60.0
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 3.0e-168 595.9 530 59.4
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 3.0e-168 595.9 518 59.5
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 3.0e-168 595.9 522 69.3
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 3.0e-168 595.9 522 69.3
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 5.1e-168 595.1 515 59.8
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 5.1e-168 595.1 515 59.8
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 5.1e-168 595.1 524 70.8
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 6.7e-168 594.7 525 59.0
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 6.7e-168 594.7 525 59.0
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 1.1e-167 594.0 521 59.7
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 1.9e-167 593.2 523 67.3
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 5.7e-167 591.7 519 69.7
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 9.7e-167 590.9 526 62.0
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 2.2e-166 589.7 515 58.8
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 1.4e-165 587.0 520 60.2
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.5e-164 583.6 539 66.0
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 2.0e-164 583.2 540 66.3
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.7e-163 580.1 540 66.1
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 3.8e-163 578.9 480 61.0
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 1.4e-162 577.0 526 66.7
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 7.2e-162 574.7 525 60.4
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 1.0e-160 570.9 529 58.4
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 1.8e-160 570.1 526 57.8
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 3.0e-160 569.3 539 65.7
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 1.7e-158 563.5 533 56.5
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 2.8e-158 562.8 525 57.5
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 4.8e-158 562.0 533 56.5
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 3.1e-157 559.3 514 66.5
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 1.3e-155 553.9 532 55.3
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 3.2e-154 549.3 520 59.0
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 4.2e-154 548.9 534 56.6
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 1.5e-151 540.4 519 54.3
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 4.2e-146 522.3 519 66.1
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 1.2e-145 520.8 528 52.1
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 2.1e-145 520.0 519 53.4
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 6.7e-144 515.0 522 53.1
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 2.6e-143 513.1 523 52.8
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 1.2e-140 504.2 502 62.0
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 1.2e-140 504.2 519 52.6
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 2.6e-140 503.1 521 54.9
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 4.5e-140 502.3 520 52.1
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 6.5e-139 498.4 517 62.1
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 3.6e-137 492.7 516 53.1
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 6.1e-137 491.9 527 52.8
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 1.0e-136 491.1 519 51.4
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 1.7e-134 483.8 523 50.1
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 5.3e-133 478.8 458 67.2
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 1.2e-132 477.6 523 49.5
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 2.7e-132 476.5 523 49.5
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 2.7e-132 476.5 523 49.7
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 4.5e-132 475.7 522 49.8
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 2.2e-131 473.4 326 72.1
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 6.3e-126 455.3 521 51.8
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 1.6e-116 424.1 519 46.8
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 1.1e-109 401.4 524 45.8
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 1.0e-107 394.8 376 71.8
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 1.5e-106 391.0 537 44.9
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 1.9e-93 347.4 518 49.0
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 7.8e-92 342.0 527 49.1
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 6.6e-83 312.4 274 57.7
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 9.6e-82 308.5 522 49.4
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 6.9e-80 302.4 517 41.2
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 2.5e-74 283.9 324 49.4
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 4.5e-71 273.1 307 50.8
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 1.7e-70 271.2 503 37.0
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 1.3e-65 255.0 252 50.0
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 1.8e-56 224.6 516 29.8
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 1.8e-48 198.0 397 32.0
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 2.4e-48 197.6 307 39.4
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 3.2e-45 187.2 223 48.0
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 1.1e-37 162.2 97 74.2
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 1.1e-32 145.6 237 42.6
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 5.9e-31 139.8 102 67.6
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 6.1e-28 129.8 106 62.3
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 6.1e-28 129.8 507 27.6
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 6.7e-27 126.3 120 55.8
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 2.0e-26 124.8 178 42.1
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 5.5e-21 106.7 159 42.8
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 3.0e-19 100.9 159 40.9
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 3.7e-17 94.0 70 68.6
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 1.1e-16 92.4 118 44.9
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 8.0e-12 76.3 49 77.6
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 6.8e-11 73.2 85 47.1
CAN.G111.2 Capsicum annuum HOM05D000002 ORTHO05D000001 2.0e-10 71.6 47 68.1
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 4.4e-10 70.5 103 41.7
SEGI_41146 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 1.7e-09 68.6 70 47.1
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 3.1e-08 64.3 85 42.4
CBR_g31026 Chara braunii HOM05D005544 ORTHO05D007303 2.7e-07 61.2 82 46.3


User provided reference genes

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