Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn1161_0010 Schrenkiella parvula HOM05D003261 ORTHO05D027516 7.5e-59 230.3 118 100.0
Thhalv10025068m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 2.3e-52 208.8 115 91.3
BcaC06g32973 Brassica carinata HOM05D003261 ORTHO05D004230 1.3e-50 203.0 115 89.6
CARHR290440 Cardamine hirsuta HOM05D003261 ORTHO05D004230 2.2e-50 202.2 115 88.7
BcaC06g33437 Brassica carinata HOM05D003261 ORTHO05D004230 1.1e-49 199.9 115 88.7
C07p47500 Brassica napus HOM05D003261 ORTHO05D004230 1.1e-49 199.9 115 88.7
BolC7t45277H Brassica oleracea HOM05D003261 ORTHO05D004230 1.1e-49 199.9 115 88.7
AL7G39370 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 7.0e-49 197.2 115 87.0
A03p49450 Brassica napus HOM05D003261 ORTHO05D004230 9.2e-49 196.8 115 87.8
Carub.0007s2576 Capsella rubella HOM05D003261 ORTHO05D004230 1.6e-48 196.1 113 85.8
Aa31LG10G6240 Aethionema arabicum HOM05D003261 ORTHO05D004230 3.5e-48 194.9 115 84.3
BraA03t14046Z Brassica rapa HOM05D003261 ORTHO05D004230 6.0e-48 194.1 115 87.0
BcaNung00239 Brassica carinata HOM05D003261 ORTHO05D004230 3.9e-47 191.4 115 85.2
THA.LOC104821781 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 1.2e-43 179.9 114 75.4
AT4G15900 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 2.9e-42 175.3 120 78.3
Sp7g14310 Schrenkiella parvula HOM05D002510 ORTHO05D007210 1.9e-41 172.6 106 86.8
THA.LOC104820293 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 1.9e-41 172.6 114 72.8
GSVIVG01035143001 Vitis vinifera HOM05D003261 ORTHO05D004230 1.5e-35 152.9 119 63.9
Sp3g14940 Schrenkiella parvula HOM05D003261 ORTHO05D004230 7.6e-35 150.6 115 67.8
PGR004G2696 Punica granatum HOM05D003261 ORTHO05D004230 4.9e-34 147.9 121 62.8
Thhalv10022263m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 1.1e-33 146.7 111 69.4
CARHR091900 Cardamine hirsuta HOM05D003261 ORTHO05D004230 3.2e-33 145.2 105 67.6
Manes.03G196900 Manihot esculenta HOM05D003261 ORTHO05D004230 2.7e-32 142.1 119 61.3
AL3G29570 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 6.0e-32 141.0 117 62.4
Dinv29761 Davidia involucrata HOM05D003261 ORTHO05D004230 1.0e-31 140.2 121 60.3
Ciclev10004853m.g Citrus clementina HOM05D003261 ORTHO05D004230 1.3e-31 139.8 120 55.8
Carub.0003s1638 Capsella rubella HOM05D003261 ORTHO05D004230 1.7e-31 139.4 114 65.8
CANSAT78G0131 Cannabis sativa HOM05D003261 ORTHO05D004230 3.9e-31 138.3 111 63.1
Actinidia19581 Actinidia chinensis HOM05D003261 ORTHO05D004230 5.1e-31 137.9 120 57.5
Gohir.D02G055000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 5.1e-31 137.9 120 61.7
Gorai.005G060900 Gossypium raimondii HOM05D003261 ORTHO05D004230 5.1e-31 137.9 120 62.5
Aa31LG8G3770 Aethionema arabicum HOM05D003261 ORTHO05D004230 8.6e-31 137.1 116 63.8
Cpa.g.sc16.189 Carica papaya HOM05D003261 ORTHO05D004230 1.5e-30 136.3 112 63.4
Hma1.2p1_1185F.1_g264960 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 1.5e-30 136.3 118 61.0
AT3G16650 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 2.5e-30 135.6 117 61.5
Duzib151G0067 Durio zibethinus HOM05D003261 ORTHO05D004230 3.3e-30 135.2 120 60.8
Glyma.15G149300 Glycine max HOM05D003261 ORTHO05D004230 3.3e-30 135.2 105 64.8
Thecc.04G286600 Theobroma cacao HOM05D003261 ORTHO05D004230 3.3e-30 135.2 120 60.8
Gohir.A02G049900 Gossypium hirsutum HOM05D003261 ORTHO05D004230 5.6e-30 134.4 120 60.8
BcaC07g40009 Brassica carinata HOM05D000211 ORTHO05D004230 9.6e-30 133.7 112 66.1
Duzib052G0276 Durio zibethinus HOM05D003261 ORTHO05D004230 9.6e-30 133.7 120 58.3
vmacro08167 Vaccinium macrocarpon HOM05D003261 ORTHO05D004230 9.6e-30 133.7 120 56.7
Glyma.09G043800 Glycine max HOM05D003261 ORTHO05D004230 2.1e-29 132.5 106 63.2
Hund20540 Selenicereus undatus HOM05D003261 ORTHO05D004230 2.1e-29 132.5 115 60.9
VMungo1309G2776 Vigna mungo HOM05D003261 ORTHO05D004230 2.1e-29 132.5 110 62.7
CSS0009030 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 2.8e-29 132.1 116 59.5
CSS0013014 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 2.8e-29 132.1 116 59.5
Medtr2g436510 Medicago truncatula HOM05D003261 ORTHO05D004230 2.8e-29 132.1 107 60.7
Rhsim04G0224200 Rhododendron simsii HOM05D003261 ORTHO05D004230 2.8e-29 132.1 121 56.2
Lj6g0023887 Lotus japonicus HOM05D003261 ORTHO05D004230 3.6e-29 131.7 107 63.6
Atru.chr4.2874 Acer truncatum HOM05D003261 ORTHO05D004230 4.7e-29 131.3 111 57.7
Actinidia40288 Actinidia chinensis HOM05D003261 ORTHO05D004230 6.2e-29 131.0 119 54.6
Lalb_Chr15g0083461 Lupinus albus HOM05D003261 ORTHO05D004230 6.2e-29 131.0 111 60.4
Nn3g21489 Nelumbo nucifera HOM05D003261 ORTHO05D004230 1.1e-28 130.2 118 55.9
TAR623G1368 Trochodendron aralioides HOM05D003261 ORTHO05D004230 1.1e-28 130.2 117 59.0
Eucgr.H03935 Eucalyptus grandis HOM05D003261 ORTHO05D004230 1.8e-28 129.4 122 55.7
Lj7A515T86 Lonicera japonica HOM05D003261 ORTHO05D004230 2.4e-28 129.0 122 54.1
QL06p009632 Quercus lobata HOM05D003261 ORTHO05D004230 2.4e-28 129.0 114 57.9
ClCG06G005050 Citrullus lanatus HOM05D003261 ORTHO05D004230 4.0e-28 128.3 117 58.1
Haze_01185 Corylus avellana HOM05D003261 ORTHO05D004230 4.0e-28 128.3 117 60.7
Nn4g25790 Nelumbo nucifera HOM05D003261 ORTHO05D004230 4.0e-28 128.3 116 56.0
Potri.010G012800 Populus trichocarpa HOM05D003261 ORTHO05D004230 6.9e-28 127.5 113 55.8
Gorai.006G261700 Gossypium raimondii HOM05D003261 ORTHO05D004230 8.9e-28 127.1 119 58.8
TWI09G1311 Tripterygium wilfordii HOM05D003261 ORTHO05D004230 1.2e-27 126.7 118 56.8
COL.COLO4_13845 Corchorus olitorius HOM05D003261 ORTHO05D004230 1.5e-27 126.3 119 57.1
Sed0025564 Sechium edule HOM05D003261 ORTHO05D004230 1.5e-27 126.3 117 57.3
Sabra10G0008000 Salix brachista HOM05D003261 ORTHO05D004230 2.0e-27 125.9 113 57.5
Psat1g155040 Pisum sativum HOM05D003261 ORTHO05D004230 4.4e-27 124.8 108 58.3
Phvul.009G249100 Phaseolus vulgaris HOM05D003261 ORTHO05D004230 7.6e-27 124.0 109 56.9
PSO407G0331 Papaver somniferum HOM05D003261 ORTHO05D004230 1.7e-26 122.9 116 57.8
arahy.Tifrunner.gnm1.ann1.9TJ054 Arachis hypogaea HOM05D003261 ORTHO05D004230 2.2e-26 122.5 116 57.8
Ca_01925_v3 Cicer arietinum L. HOM05D003261 ORTHO05D004230 2.2e-26 122.5 107 57.9
PSO170G4560 Papaver somniferum HOM05D003261 ORTHO05D004230 2.2e-26 122.5 116 57.8
CsaV3_6G023930 Cucumis sativus L. HOM05D003261 ORTHO05D004230 2.9e-26 122.1 110 58.2
Aqoxy5G00755 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 3.8e-26 121.7 120 53.3
arahy.Tifrunner.gnm1.ann1.JJQ0MC Arachis hypogaea HOM05D003261 ORTHO05D004230 4.9e-26 121.3 116 56.9
MSTRG.20825 Avicennia marina HOM05D003261 ORTHO05D004230 6.4e-26 120.9 120 55.0
CiPaw.01G147300 Carya illinoinensis HOM05D003261 ORTHO05D004230 8.4e-26 120.6 119 54.6
unitig_22.g5357 Utricularia gibba HOM05D003261 ORTHO05D004230 7.1e-25 117.5 112 54.5
SGA_v2.0_scaffold95G28842 Striga asiatica HOM05D003261 ORTHO05D004230 9.3e-25 117.1 120 55.0
MELO3C021320.2 Cucumis melo HOM05D003261 ORTHO05D004230 1.2e-24 116.7 117 53.0
CiPaw.02G081900 Carya illinoinensis HOM05D003261 ORTHO05D004230 2.7e-24 115.5 121 52.9
MD00G1184900 Malus domestica HOM05D003261 ORTHO05D004230 2.7e-24 115.5 116 53.4
EL10Ac7g17420 Beta vulgaris HOM05D003261 ORTHO05D004230 3.5e-24 115.2 112 54.5
BcaC06g33515 Brassica carinata HOM05D009142 ORTHO05D027516 4.6e-24 114.8 69 82.6
C07p48260 Brassica napus HOM05D009142 ORTHO05D027516 4.6e-24 114.8 69 82.6
Prupe.1G134100 Prunus persica HOM05D003261 ORTHO05D004230 4.6e-24 114.8 116 56.0
RcHm_v2.0_Chr4g0422851 Rosa chinensis HOM05D003261 ORTHO05D004230 4.6e-24 114.8 114 55.3
BolC1t04740H Brassica oleracea HOM05D003261 ORTHO05D004230 6.0e-24 114.4 113 61.1
FvH4_4g18400 Fragaria vesca HOM05D003261 ORTHO05D004230 1.0e-23 113.6 114 55.3
FAN12G4234 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.0e-23 113.6 114 55.3
MBI16_g12924_MAGBIO Magnolia biondii HOM05D003261 ORTHO05D004230 1.3e-23 113.2 120 50.0
FAN12G0468 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.3e-23 112.5 114 54.4
Lsat_1_v5_gn_4_36321 Lactuca sativa HOM05D003261 ORTHO05D004230 3.0e-23 112.1 110 54.5
Rhsim06G0116500 Rhododendron simsii HOM05D003261 ORTHO05D004230 3.0e-23 112.1 114 55.3
FAN07G1152 Fragaria x ananassa HOM05D003261 ORTHO05D004230 6.6e-23 110.9 114 54.4
Migut.B01741 Erythranthe guttata HOM05D003261 ORTHO05D004230 1.5e-22 109.8 120 51.7
AUR62008590 Chenopodium quinoa HOM05D003261 ORTHO05D004230 2.5e-22 109.0 114 51.8
FAN17G0608 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.5e-22 109.0 114 53.5
COL.COLO4_06938 Corchorus olitorius HOM05D003261 ORTHO05D004230 3.3e-22 108.6 121 49.6
Gohir.D09G239000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 5.6e-22 107.8 133 51.1
Nitab4.5_0001251g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 5.6e-22 107.8 121 52.1
Nitab4.5_0003111g0030 Nicotiana tabacum HOM05D003261 ORTHO05D004230 5.6e-22 107.8 121 52.1
Sc19g0005390 Simmondsia chinensis HOM05D003261 ORTHO05D004230 9.6e-22 107.1 112 56.2
DCAR_008606 Daucus carota HOM05D003261 ORTHO05D004230 1.3e-21 106.7 106 54.7
A09p49870 Brassica napus HOM05D003261 ORTHO05D004230 2.8e-21 105.5 92 65.2
BraA09t40438Z Brassica rapa HOM05D003261 ORTHO05D004230 2.8e-21 105.5 92 65.2
Sopen01g038290 Solanum pennellii HOM05D003261 ORTHO05D004230 4.8e-21 104.8 119 48.7
Solyc01g094480.4 Solanum lycopersicum HOM05D003261 ORTHO05D004230 8.1e-21 104.0 119 47.9
AUR62034658 Chenopodium quinoa HOM05D003261 ORTHO05D004230 1.8e-20 102.8 109 52.3
SalBow3G0655 Salvia bowleyana HOM05D003261 ORTHO05D004230 3.1e-20 102.1 108 51.9
BcaC01g02240 Brassica carinata HOM05D019998 ORTHO05D021590 4.0e-20 101.7 69 81.2
BolSC21t60274H Brassica oleracea HOM05D019998 ORTHO05D021590 4.0e-20 101.7 69 81.2
BraA01t03826Z Brassica rapa HOM05D003261 ORTHO05D004230 5.3e-20 101.3 132 49.2
CDE08G1027 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 5.3e-20 101.3 118 48.3
BcaC09g51115 Brassica carinata HOM05D019998 ORTHO05D021590 9.0e-20 100.5 69 81.2
BolC1t01620H Brassica oleracea HOM05D019998 ORTHO05D021590 9.0e-20 100.5 69 81.2
MD00G1128100 Malus domestica HOM05D003261 ORTHO05D004230 1.2e-19 100.1 76 60.5
MD16G1167100 Malus domestica HOM05D003261 ORTHO05D004230 1.2e-19 100.1 116 50.0
C08p32230 Brassica napus HOM05D000211 ORTHO05D041739 1.5e-19 99.8 111 54.1
HanXRQChr17g0561551 Helianthus annuus HOM05D003261 ORTHO05D004230 2.6e-19 99.0 107 50.5
Ah.08g212490 Amaranthus hybridus HOM05D003261 ORTHO05D004230 3.4e-19 98.6 99 55.6
A01p37650 Brassica napus HOM05D003261 ORTHO05D004230 3.4e-19 98.6 113 56.6
ATR0796G128 Amborella trichopoda HOM05D003261 ORTHO05D004230 1.3e-18 96.7 125 45.6
ECA234G0824 Erigeron canadensis HOM05D003261 ORTHO05D004230 4.9e-18 94.7 107 48.6
BcaC08g43649 Brassica carinata HOM05D000171 ORTHO05D000101 8.4e-18 94.0 53 88.7
C06p10670 Brassica napus HOM05D000171 ORTHO05D000101 8.4e-18 94.0 53 88.7
HPP92_023226 Vanilla planifolia HOM05D003261 ORTHO05D004230 1.4e-17 93.2 112 43.8
CDE09G0842 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 1.9e-17 92.8 118 45.8
BolC8t50839H Brassica oleracea HOM05D003261 ORTHO05D018817 4.2e-17 91.7 79 64.6
Rhsim12G0061000 Rhododendron simsii HOM05D003261 ORTHO05D004230 5.4e-17 91.3 124 43.5
Peaxi162Scf00056g00015 Petunia axillaris HOM05D003261 ORTHO05D004230 7.1e-17 90.9 106 46.2
C03p67510 Brassica napus HOM05D019998 ORTHO05D021590 2.7e-16 89.0 59 83.1
C01p16760 Brassica napus HOM05D019998 ORTHO05D021590 1.8e-15 86.3 59 81.4
ECA234G3327 Erigeron canadensis HOM05D003261 ORTHO05D018817 6.7e-15 84.3 77 55.8
SHI00250 Sapria himalayana HOM05D003261 ORTHO05D018817 4.3e-14 81.6 48 79.2
Zm00001eb051300 Zea mays HOM05D003261 ORTHO05D004230 9.6e-14 80.5 114 39.5
TPR.G22357 Trifolium pratense HOM05D003261 ORTHO05D004230 3.7e-13 78.6 107 41.1
Peaxi162Scf00089g00028 Petunia axillaris HOM05D003261 ORTHO05D004230 1.1e-12 77.0 89 48.3
BcaC04g21679 Brassica carinata HOM05D009142 ORTHO05D090460 4.0e-12 75.1 61 62.3
Os03g0339100 Oryza sativa ssp. japonica HOM05D003261 ORTHO05D004230 5.3e-12 74.7 107 41.1
COL.COLO4_10588 Corchorus olitorius HOM05D004885 ORTHO05D006124 1.5e-11 73.2 105 43.8
C01p19490 Brassica napus HOM05D009142 ORTHO05D041610 3.4e-11 72.0 61 68.9
BcaC09g49802 Brassica carinata HOM05D009142 ORTHO05D091049 4.5e-11 71.6 68 61.8
C01p32780 Brassica napus HOM05D009142 ORTHO05D017515 7.6e-11 70.9 50 76.0
C02p23170 Brassica napus HOM05D009142 ORTHO05D017515 9.9e-11 70.5 50 76.0
BolC3t19232H Brassica oleracea HOM05D009142 ORTHO05D106603 9.9e-11 70.5 51 74.5
Gorai.007G268100 Gossypium raimondii HOM05D003261 ORTHO05D018817 9.9e-11 70.5 44 75.0
C03p69660 Brassica napus HOM05D009142 ORTHO05D017515 1.7e-10 69.7 50 76.0
BolC3t19224H Brassica oleracea HOM05D009142 ORTHO05D017515 1.7e-10 69.7 50 76.0
Cc02_g37840 Coffea canephora HOM05D003261 ORTHO05D004230 1.7e-10 69.7 73 47.9
BcaC01g01996 Brassica carinata HOM05D009142 ORTHO05D017515 2.9e-10 68.9 48 77.1
BolC9t55760H Brassica oleracea HOM05D009142 ORTHO05D017515 4.9e-10 68.2 50 74.0
BcaC01g02001 Brassica carinata HOM05D009142 ORTHO05D017515 6.4e-10 67.8 48 77.1
COL.COLO4_28010 Corchorus olitorius HOM05D003261 ORTHO05D018817 1.1e-09 67.0 86 48.8
C03p69730 Brassica napus HOM05D009142 ORTHO05D017515 1.9e-09 66.2 48 75.0
C08p06560 Brassica napus HOM05D009142 ORTHO05D017515 1.9e-09 66.2 48 75.0
Gohir.D11G250150 Gossypium hirsutum HOM05D003261 ORTHO05D018817 2.4e-09 65.9 44 70.5
BcaC07g37235 Brassica carinata HOM05D009142 ORTHO05D090351 3.2e-09 65.5 49 73.5
C09p28950 Brassica napus HOM05D009142 ORTHO05D097323 3.2e-09 65.5 81 46.9
BolC2t08459H Brassica oleracea HOM05D009142 ORTHO05D106632 5.5e-09 64.7 51 70.6
C03p63110 Brassica napus HOM05D009142 ORTHO05D101793 7.1e-09 64.3 46 76.1
BolC7t45349H Brassica oleracea HOM05D009142 ORTHO05D027516 1.0e-07 60.5 36 77.8
BcaC09g50894 Brassica carinata HOM05D009142 ORTHO05D095404 2.3e-07 59.3 35 82.9
Pp3c16_8560 Physcomitrium patens HOM05D003261 ORTHO05D004230 1.1e-06 57.0 105 41.0
BcaB05g23705 Brassica carinata HOM05D002724 ORTHO05D002995 2.5e-06 55.8 35 74.3
C01p47680 Brassica napus HOM05D003261 ORTHO05D004230 5.6e-06 54.7 112 42.9
BolC3t18675H Brassica oleracea HOM05D005198 ORTHO05D006839 5.6e-06 54.7 32 87.5


User provided reference genes

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