Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0252_0010 Schrenkiella parvula HOM05D002725 ORTHO05D371953 9.4e-40 166.4 83 100.0
BcaC06g31807 Brassica carinata HOM05D002725 ORTHO05D003279 5.7e-13 77.4 65 67.7
BcaC02g10686 Brassica carinata HOM05D002725 ORTHO05D003279 2.8e-12 75.1 65 66.2
C05p51290 Brassica napus HOM05D002725 ORTHO05D003279 2.8e-12 75.1 65 66.2
BolC4t24141H Brassica oleracea HOM05D002725 ORTHO05D003279 2.8e-12 75.1 65 66.2
CARHR292010 Cardamine hirsuta HOM05D002725 ORTHO05D003279 8.3e-12 73.6 64 64.1
BcaB04g20253 Brassica carinata HOM05D002725 ORTHO05D003279 3.1e-11 71.6 65 63.1
BcaC09g49421 Brassica carinata HOM05D002725 ORTHO05D003279 3.1e-11 71.6 65 63.1
A01p29130 Brassica napus HOM05D002725 ORTHO05D003279 3.1e-11 71.6 65 63.1
C01p36870 Brassica napus HOM05D002725 ORTHO05D003279 3.1e-11 71.6 65 63.1
BolC1t03648H Brassica oleracea HOM05D002725 ORTHO05D003279 3.1e-11 71.6 65 63.1
BraA01t02981Z Brassica rapa HOM05D002725 ORTHO05D003279 3.1e-11 71.6 65 63.1
AL2G16480 Arabidopsis lyrata HOM05D002725 ORTHO05D003279 5.4e-11 70.9 64 62.5
Eucgr.H02616 Eucalyptus grandis HOM05D002725 ORTHO05D003279 5.4e-11 70.9 65 60.0
RcHm_v2.0_Chr2g0108041 Rosa chinensis HOM05D002725 ORTHO05D003279 9.1e-11 70.1 65 60.0
MD02G1186000 Malus domestica HOM05D002725 ORTHO05D003279 1.2e-10 69.7 65 58.5
Prupe.6G220500 Prunus persica HOM05D002725 ORTHO05D003279 1.2e-10 69.7 65 58.5
PGR119G1015 Punica granatum HOM05D002725 ORTHO05D003279 1.6e-10 69.3 64 59.4
Cpa.g.sc824.3 Carica papaya HOM05D002725 ORTHO05D003279 2.0e-10 68.9 65 58.5
CiPaw.05G149700 Carya illinoinensis HOM05D002725 ORTHO05D003279 2.7e-10 68.6 65 56.9
CiPaw.14G100600 Carya illinoinensis HOM05D002725 ORTHO05D003279 2.7e-10 68.6 65 56.9
ECA233G4284 Erigeron canadensis HOM05D002725 ORTHO05D003279 2.7e-10 68.6 65 55.4
Sp2g04490 Schrenkiella parvula HOM05D002725 ORTHO05D003279 2.7e-10 68.6 64 60.9
FvH4_1g17710 Fragaria vesca HOM05D002725 ORTHO05D003279 3.5e-10 68.2 65 58.5
FAN19G1008 Fragaria x ananassa HOM05D002725 ORTHO05D003279 3.5e-10 68.2 65 58.5
FAN23G0685 Fragaria x ananassa HOM05D002725 ORTHO05D003279 3.5e-10 68.2 65 58.5
FAN26G2216 Fragaria x ananassa HOM05D002725 ORTHO05D003279 3.5e-10 68.2 65 58.5
FAN28G0598 Fragaria x ananassa HOM05D002725 ORTHO05D003279 3.5e-10 68.2 65 58.5
Ciclev10031363m.g Citrus clementina HOM05D002725 ORTHO05D003279 5.9e-10 67.4 64 57.8
Manes.12G030200 Manihot esculenta HOM05D002725 ORTHO05D003279 5.9e-10 67.4 65 56.9
DCAR_031095 Daucus carota HOM05D002725 ORTHO05D003279 1.0e-09 66.6 65 56.9
Potri.014G102800 Populus trichocarpa HOM05D002725 ORTHO05D003279 1.0e-09 66.6 65 56.9
Prupe.5G061600 Prunus persica HOM05D002725 ORTHO05D003279 1.0e-09 66.6 65 56.9
Actinidia01708 Actinidia chinensis HOM05D002725 ORTHO05D003279 1.7e-09 65.9 65 55.4
Carub.0002s0508 Capsella rubella HOM05D002725 ORTHO05D003279 1.7e-09 65.9 64 59.4
HanXRQChr08g0234721 Helianthus annuus HOM05D002725 ORTHO05D003279 2.2e-09 65.5 65 55.4
Manes.13G031300 Manihot esculenta HOM05D002725 ORTHO05D003279 2.2e-09 65.5 65 56.9
Oeu001743.1 Olea europaea HOM05D002725 ORTHO05D003279 2.2e-09 65.5 65 53.8
Aa31LG2G10130 Aethionema arabicum HOM05D002725 ORTHO05D003279 2.9e-09 65.1 64 57.8
Hma1.2p1_0867F.1_g230300 Hydrangea macrophylla HOM05D002725 ORTHO05D003279 2.9e-09 65.1 65 53.8
THA.LOC104812782 Tarenaya hassleriana HOM05D002725 ORTHO05D003279 2.9e-09 65.1 65 55.4
Haze_12164 Corylus avellana HOM05D002725 ORTHO05D003279 3.8e-09 64.7 65 53.8
AT1G60170 Arabidopsis thaliana HOM05D002725 ORTHO05D003279 5.0e-09 64.3 64 57.8
TAR371G0609 Trochodendron aralioides HOM05D002725 ORTHO05D003279 5.0e-09 64.3 65 53.8
TAR629G1020 Trochodendron aralioides HOM05D002725 ORTHO05D003279 5.0e-09 64.3 65 53.8
CAN.G1178.23 Capsicum annuum HOM05D002725 ORTHO05D003279 6.5e-09 63.9 65 53.8
Nn3g16917 Nelumbo nucifera HOM05D002725 ORTHO05D003279 8.5e-09 63.5 65 53.8
THA.LOC104816751 Tarenaya hassleriana HOM05D002725 ORTHO05D003279 8.5e-09 63.5 65 56.9
Nitab4.5_0001381g0050 Nicotiana tabacum HOM05D002725 ORTHO05D003279 1.1e-08 63.2 65 52.3
Nitab4.5_0002289g0110 Nicotiana tabacum HOM05D002725 ORTHO05D003279 1.1e-08 63.2 65 52.3
Phvul.008G149300 Phaseolus vulgaris HOM05D002725 ORTHO05D003279 1.1e-08 63.2 65 52.3
Potri.002G176000 Populus trichocarpa HOM05D002725 ORTHO05D003279 1.1e-08 63.2 65 53.8
Sabra02G0137700 Salix brachista HOM05D002725 ORTHO05D003279 1.1e-08 63.2 65 53.8
VMungo0464G0614 Vigna mungo HOM05D002725 ORTHO05D003279 1.1e-08 63.2 65 52.3
Glyma.16G063000 Glycine max HOM05D002725 ORTHO05D003279 1.5e-08 62.8 65 52.3
Glyma.19G082500 Glycine max HOM05D002725 ORTHO05D003279 1.5e-08 62.8 65 52.3
Lj1g0003905 Lotus japonicus HOM05D002725 ORTHO05D003279 1.5e-08 62.8 65 52.3
CSS0011985 Camellia sinensis var. sinensis HOM05D002725 ORTHO05D003279 1.9e-08 62.4 65 50.8
CSS0030976 Camellia sinensis var. sinensis HOM05D002725 ORTHO05D003279 1.9e-08 62.4 65 50.8
FvH4_5g18910 Fragaria vesca HOM05D002725 ORTHO05D003279 1.9e-08 62.4 65 53.8
Lsat_1_v5_gn_1_10560 Lactuca sativa HOM05D002725 ORTHO05D003279 1.9e-08 62.4 64 53.1
Lsat_1_v5_gn_8_158161 Lactuca sativa HOM05D002725 ORTHO05D003279 1.9e-08 62.4 64 53.1
MBI10_g36211_MAGBIO Magnolia biondii HOM05D002725 ORTHO05D003279 1.9e-08 62.4 65 53.8
MBI18_g25085_MAGBIO Magnolia biondii HOM05D002725 ORTHO05D003279 1.9e-08 62.4 65 53.8
MSTRG.7887 Avicennia marina HOM05D002725 ORTHO05D003279 2.5e-08 62.0 65 50.8
Thhalv10023432m.g Eutrema salsugineum HOM05D002725 ORTHO05D003279 2.5e-08 62.0 64 56.2
Peaxi162Scf00301g00128 Petunia axillaris HOM05D002725 ORTHO05D003279 2.5e-08 62.0 65 52.3
QL03p061701 Quercus lobata HOM05D002725 ORTHO05D003279 2.5e-08 62.0 65 53.8
Hund25340 Selenicereus undatus HOM05D002725 ORTHO05D003279 2.5e-08 62.0 64 53.1
Solyc08g078430.4 Solanum lycopersicum HOM05D002725 ORTHO05D003279 2.5e-08 62.0 65 52.3
Sopen08g026920 Solanum pennellii HOM05D002725 ORTHO05D003279 2.5e-08 62.0 65 52.3
PGSC0003DMG400004771 Solanum tuberosum HOM05D002725 ORTHO05D003279 2.5e-08 62.0 65 52.3
PSO063G5148 Papaver somniferum HOM05D002725 ORTHO05D003279 3.2e-08 61.6 65 52.3
PSO832G2366 Papaver somniferum HOM05D002725 ORTHO05D003279 3.2e-08 61.6 65 52.3
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 3.2e-08 61.6 65 50.8
AagrBONN_evm.TU.Sc2ySwM_368.3392 Anthoceros agrestis HOM05D002725 ORTHO05D003279 4.2e-08 61.2 64 54.7
Dinv24871 Davidia involucrata HOM05D002725 ORTHO05D003279 5.5e-08 60.8 65 52.3
arahy.Tifrunner.gnm1.ann1.JTBU3D Arachis hypogaea HOM05D002725 ORTHO05D003279 7.2e-08 60.5 64 51.6
arahy.Tifrunner.gnm1.ann1.JXF13M Arachis hypogaea HOM05D002725 ORTHO05D003279 7.2e-08 60.5 64 51.6
arahy.Tifrunner.gnm1.ann1.LYET28 Arachis hypogaea HOM05D002725 ORTHO05D003279 7.2e-08 60.5 64 51.6
BcaC05g25456 Brassica carinata HOM05D002725 ORTHO05D003279 7.2e-08 60.5 61 54.1
C05p13400 Brassica napus HOM05D002725 ORTHO05D003279 7.2e-08 60.5 61 54.1
BolC5t30077H Brassica oleracea HOM05D002725 ORTHO05D003279 7.2e-08 60.5 61 54.1
Migut.K01129 Erythranthe guttata HOM05D002725 ORTHO05D003279 7.2e-08 60.5 65 49.2
TWI75G1526 Tripterygium wilfordii HOM05D002725 ORTHO05D003279 7.2e-08 60.5 65 50.8
GSVIVG01020223001 Vitis vinifera HOM05D002725 ORTHO05D003279 7.2e-08 60.5 65 50.8
arahy.Tifrunner.gnm1.ann1.D69TB6 Arachis hypogaea HOM05D002725 ORTHO05D003279 9.4e-08 60.1 64 51.6
Duzib268G0345 Durio zibethinus HOM05D002725 ORTHO05D003279 9.4e-08 60.1 65 50.8
Sc14g0008580 Simmondsia chinensis HOM05D002725 ORTHO05D003279 9.4e-08 60.1 64 53.1
ClCG05G025230 Citrullus lanatus HOM05D002725 ORTHO05D003279 1.2e-07 59.7 64 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2036 Anthoceros agrestis HOM05D002725 ORTHO05D003279 1.6e-07 59.3 64 50.0
CANSAT56G0776 Cannabis sativa HOM05D002725 ORTHO05D003279 1.6e-07 59.3 64 50.0
CDE11G0115 Ceratophyllum demersum HOM05D002725 ORTHO05D003279 1.6e-07 59.3 65 50.8
Duzib106G0624 Durio zibethinus HOM05D002725 ORTHO05D003279 1.6e-07 59.3 65 49.2
HPP92_018031 Vanilla planifolia HOM05D002725 ORTHO05D003279 1.6e-07 59.3 65 49.2
Lalb_Chr22g0360531 Lupinus albus HOM05D002725 ORTHO05D003279 2.1e-07 58.9 64 50.0
Psat3g161280 Pisum sativum HOM05D002725 ORTHO05D003279 2.1e-07 58.9 64 50.0
SalBow2G2496 Salvia bowleyana HOM05D002725 ORTHO05D003279 2.1e-07 58.9 65 49.2
vmacro16261 Vaccinium macrocarpon HOM05D002725 ORTHO05D003279 2.1e-07 58.9 65 49.2
Ca_06608_v3 Cicer arietinum L. HOM05D002725 ORTHO05D003279 2.7e-07 58.5 64 50.0
Sed0004453 Sechium edule HOM05D002725 ORTHO05D003279 2.7e-07 58.5 64 48.4
Ah.02g129870 Amaranthus hybridus HOM05D002725 ORTHO05D003279 3.6e-07 58.2 64 51.6
AL8G22600 Arabidopsis lyrata HOM05D002725 ORTHO05D003279 3.6e-07 58.2 64 53.1
AUR62005361 Chenopodium quinoa HOM05D002725 ORTHO05D003279 3.6e-07 58.2 64 51.6
AUR62014016 Chenopodium quinoa HOM05D002725 ORTHO05D003279 3.6e-07 58.2 64 51.6
MELO3C012005.2 Cucumis melo HOM05D002725 ORTHO05D003279 3.6e-07 58.2 64 48.4
CsaV3_5G031650 Cucumis sativus L. HOM05D002725 ORTHO05D003279 3.6e-07 58.2 64 48.4
SHI27131 Sapria himalayana HOM05D002725 ORTHO05D003279 3.6e-07 58.2 65 47.7
EL10Ac6g13658 Beta vulgaris HOM05D002725 ORTHO05D003279 4.7e-07 57.8 64 50.0
Ca_25613_v3 Cicer arietinum L. HOM05D002725 ORTHO05D003279 4.7e-07 57.8 64 50.0
Thhalv10003005m.g Eutrema salsugineum HOM05D002725 ORTHO05D003279 4.7e-07 57.8 64 51.6
AL3G44040 Arabidopsis lyrata HOM05D002725 ORTHO05D003279 6.1e-07 57.4 64 54.7
Medtr7g037560 Medicago truncatula HOM05D002725 ORTHO05D003279 6.1e-07 57.4 65 47.7
Thecc.02G244300 Theobroma cacao HOM05D002725 ORTHO05D003279 8.0e-07 57.0 65 47.7
Phvul.003G041300 Phaseolus vulgaris HOM05D002725 ORTHO05D003279 1.0e-06 56.6 65 49.2
unitig_22.g6933 Utricularia gibba HOM05D002725 ORTHO05D003279 1.0e-06 56.6 64 48.4
A06p11270 Brassica napus HOM05D002725 ORTHO05D003279 1.4e-06 56.2 60 51.7
Gohir.A03G140600 Gossypium hirsutum HOM05D002725 ORTHO05D003279 1.8e-06 55.8 65 47.7
Gohir.D02G163400 Gossypium hirsutum HOM05D002725 ORTHO05D003279 1.8e-06 55.8 65 47.7
Gorai.005G183400 Gossypium raimondii HOM05D002725 ORTHO05D003279 1.8e-06 55.8 65 47.7
Thhalv10009759m.g Eutrema salsugineum HOM05D002725 ORTHO05D003279 2.3e-06 55.5 63 52.4
FAN04G1721 Fragaria x ananassa HOM05D002725 ORTHO05D003279 2.3e-06 55.5 75 42.7
COL.COLO4_36975 Corchorus olitorius HOM05D002725 ORTHO05D003279 3.0e-06 55.1 65 47.7
Aqoxy3G02968 Aquilegia oxysepala HOM05D002725 ORTHO05D003279 4.0e-06 54.7 65 47.7
BraA06t24307Z Brassica rapa HOM05D002725 ORTHO05D003279 5.2e-06 54.3 60 50.0
Os07g0141600 Oryza sativa ssp. japonica HOM05D002725 ORTHO05D003279 5.2e-06 54.3 65 50.8
TPR.G9070 Trifolium pratense HOM05D002725 ORTHO05D003279 8.8e-06 53.5 63 46.0


User provided reference genes

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