Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0093_0010 Schrenkiella parvula HOM05D003237 ORTHO05D003631 6.2e-97 357.5 180 100.0
SpUn0093_0020 Schrenkiella parvula HOM05D003237 ORTHO05D003631 6.2e-97 357.5 180 100.0
SpUn0105_0010 Schrenkiella parvula HOM05D003237 ORTHO05D003631 6.2e-97 357.5 180 100.0
SpUn0105_0020 Schrenkiella parvula HOM05D003237 ORTHO05D003631 6.2e-97 357.5 180 100.0
SpUn0154_0010 Schrenkiella parvula HOM05D003237 ORTHO05D003631 6.2e-97 357.5 180 100.0
SpUn0154_0020 Schrenkiella parvula HOM05D003237 ORTHO05D003631 6.2e-97 357.5 180 100.0
SpUn0012_0060 Schrenkiella parvula HOM05D003237 ORTHO05D003631 1.4e-96 356.3 180 99.4
Sp4g09770 Schrenkiella parvula HOM05D003237 ORTHO05D003631 2.4e-96 355.5 180 99.4
Sp4g09790 Schrenkiella parvula HOM05D003237 ORTHO05D003631 9.3e-93 343.6 180 96.7
SpUn0012_0040 Schrenkiella parvula HOM05D003237 ORTHO05D003631 9.3e-93 343.6 180 96.7
BcaB02g10072 Brassica carinata HOM05D003237 ORTHO05D003631 1.7e-86 322.8 180 91.7
C04p56360 Brassica napus HOM05D003237 ORTHO05D003631 6.4e-86 320.9 180 91.1
A04p20580 Brassica napus HOM05D003237 ORTHO05D003631 5.5e-85 317.8 180 90.6
BraA04t17633Z Brassica rapa HOM05D003237 ORTHO05D003631 5.5e-85 317.8 180 90.6
Thhalv10001919m.g Eutrema salsugineum HOM05D003237 ORTHO05D003631 1.3e-83 313.2 180 89.4
Thhalv10001921m.g Eutrema salsugineum HOM05D003237 ORTHO05D003631 5.1e-83 311.2 180 88.9
BcaC02g08283 Brassica carinata HOM05D003237 ORTHO05D003631 1.9e-82 309.3 180 89.4
BolC4t27166H Brassica oleracea HOM05D003237 ORTHO05D003631 1.9e-82 309.3 180 89.4
A07p17990 Brassica napus HOM05D003237 ORTHO05D003631 5.6e-82 307.8 181 88.4
C04p24400 Brassica napus HOM05D003237 ORTHO05D003631 5.6e-82 307.8 182 89.6
BolC4t23937H Brassica oleracea HOM05D003237 ORTHO05D003631 5.6e-82 307.8 182 89.6
BraA07t29518Z Brassica rapa HOM05D003237 ORTHO05D003631 5.6e-82 307.8 181 88.4
BcaC02g10857 Brassica carinata HOM05D003237 ORTHO05D003631 1.3e-81 306.6 182 89.0
BcaB01g03049 Brassica carinata HOM05D003237 ORTHO05D003631 5.3e-80 301.2 181 86.7
BcaB06g28111 Brassica carinata HOM05D003237 ORTHO05D003631 9.0e-80 300.4 181 87.8
AL4G20820 Arabidopsis lyrata HOM05D003237 ORTHO05D003631 1.5e-79 299.7 180 87.8
Carub.0004s0759 Capsella rubella HOM05D003237 ORTHO05D003631 5.8e-79 297.7 180 86.1
AL4G20790 Arabidopsis lyrata HOM05D003237 ORTHO05D003631 7.1e-77 290.8 181 86.7
AT2G27100 Arabidopsis thaliana HOM05D003237 ORTHO05D003631 3.7e-73 278.5 180 83.3
Carub.0004s0762 Capsella rubella HOM05D003237 ORTHO05D003631 3.1e-72 275.4 180 82.2
THA.LOC104816965 Tarenaya hassleriana HOM05D003237 ORTHO05D003631 2.8e-65 252.3 188 75.5
THA.LOC104801503 Tarenaya hassleriana HOM05D003237 ORTHO05D003631 2.2e-62 242.7 188 73.9
Aa31LG5G8480 Aethionema arabicum HOM05D003237 ORTHO05D003631 4.6e-60 235.0 166 78.9
THA.LOC104826477 Tarenaya hassleriana HOM05D003237 ORTHO05D003631 2.4e-56 222.6 188 68.6
Sabra04G0133100 Salix brachista HOM05D003237 ORTHO05D003631 2.6e-55 219.2 192 67.2
Potri.004G196400 Populus trichocarpa HOM05D003237 ORTHO05D003631 2.2e-54 216.1 191 66.0
Potri.009G158600 Populus trichocarpa HOM05D003237 ORTHO05D003631 6.5e-54 214.5 192 66.1
Manes.04G052501 Manihot esculenta HOM05D003237 ORTHO05D003631 1.4e-53 213.4 192 65.1
Cpa.g.sc103.67 Carica papaya HOM05D003237 ORTHO05D003631 3.2e-53 212.2 192 67.7
Thecc.09G337100 Theobroma cacao HOM05D003237 ORTHO05D003631 5.5e-53 211.5 192 64.1
Manes.11G111400 Manihot esculenta HOM05D003237 ORTHO05D003631 7.2e-53 211.1 192 65.6
Sabra09G0124100 Salix brachista HOM05D003237 ORTHO05D003631 1.6e-52 209.9 192 64.6
COL.COLO4_18368 Corchorus olitorius HOM05D003237 ORTHO05D003631 2.1e-52 209.5 192 64.1
Ciclev10014331m.g Citrus clementina HOM05D003237 ORTHO05D003631 3.0e-51 205.7 192 62.5
FvH4_3g27130 Fragaria vesca HOM05D003237 ORTHO05D003631 5.2e-51 204.9 193 64.2
FAN11G2711 Fragaria x ananassa HOM05D003237 ORTHO05D003631 5.2e-51 204.9 193 64.2
FAN16G3041 Fragaria x ananassa HOM05D003237 ORTHO05D003631 5.2e-51 204.9 193 64.2
FAN25G1344 Fragaria x ananassa HOM05D003237 ORTHO05D003631 5.2e-51 204.9 193 64.2
Eucgr.J00624 Eucalyptus grandis HOM05D003237 ORTHO05D003631 1.5e-50 203.4 189 64.6
FAN21G2928 Fragaria x ananassa HOM05D003237 ORTHO05D003631 2.0e-50 203.0 193 63.7
PGR119G2033 Punica granatum HOM05D003237 ORTHO05D003631 3.3e-50 202.2 188 64.4
Atru.chr3.3010 Acer truncatum HOM05D003237 ORTHO05D003631 7.4e-50 201.1 188 63.3
Gohir.D13G235500 Gossypium hirsutum HOM05D003237 ORTHO05D003631 9.7e-50 200.7 192 60.9
Hma1.2p1_0218F.1_g092610 Hydrangea macrophylla HOM05D003237 ORTHO05D003631 9.7e-50 200.7 190 62.6
RcHm_v2.0_Chr5g0049831 Rosa chinensis HOM05D003237 ORTHO05D003631 1.3e-49 200.3 192 63.5
MD11G1180900 Malus domestica HOM05D003237 ORTHO05D003631 1.7e-49 199.9 193 63.2
Gohir.A13G230000 Gossypium hirsutum HOM05D003237 ORTHO05D003631 2.8e-49 199.1 192 60.9
Gorai.009G104900 Gossypium raimondii HOM05D003237 ORTHO05D003631 4.8e-49 198.4 192 60.9
Prupe.6G153800 Prunus persica HOM05D003237 ORTHO05D003631 6.3e-49 198.0 193 61.7
Solyc01g009090.3 Solanum lycopersicum HOM05D003237 ORTHO05D003631 6.3e-49 198.0 188 60.6
Sopen01g004580 Solanum pennellii HOM05D003237 ORTHO05D003631 1.1e-48 197.2 188 60.6
TAR633G2621 Trochodendron aralioides HOM05D003237 ORTHO05D003631 1.4e-48 196.8 196 61.2
Gohir.D05G100800 Gossypium hirsutum HOM05D003237 ORTHO05D003631 2.4e-48 196.1 192 60.4
Dinv05234 Davidia involucrata HOM05D003237 ORTHO05D003631 4.1e-48 195.3 193 61.1
Actinidia06362 Actinidia chinensis HOM05D003237 ORTHO05D003631 7.0e-48 194.5 193 62.2
SGA_v2.0_scaffold79G25511 Striga asiatica HOM05D003237 ORTHO05D003631 9.1e-48 194.1 185 64.3
CSS0011655 Camellia sinensis var. sinensis HOM05D003237 ORTHO05D003631 1.6e-47 193.4 194 60.3
CSS0037994 Camellia sinensis var. sinensis HOM05D003237 ORTHO05D003631 1.6e-47 193.4 194 60.3
Gohir.A05G101000 Gossypium hirsutum HOM05D003237 ORTHO05D003631 2.6e-47 192.6 192 59.9
Aa31LG5G8490 Aethionema arabicum HOM05D003237 ORTHO05D003631 4.5e-47 191.8 172 66.9
Nitab4.5_0000428g0160 Nicotiana tabacum HOM05D003237 ORTHO05D003631 4.5e-47 191.8 192 58.3
Actinidia22473 Actinidia chinensis HOM05D003237 ORTHO05D003631 5.9e-47 191.4 192 60.9
CAN.G651.1 Capsicum annuum HOM05D003237 ORTHO05D003631 5.9e-47 191.4 192 60.9
CANSAT54G1397 Cannabis sativa HOM05D003237 ORTHO05D003631 7.7e-47 191.0 193 58.5
MELO3C015627.2 Cucumis melo HOM05D003237 ORTHO05D003631 1.3e-46 190.3 193 61.1
CsaV3_1G042090 Cucumis sativus L. HOM05D003237 ORTHO05D003631 1.3e-46 190.3 193 61.1
Dinv02325 Davidia involucrata HOM05D003237 ORTHO05D003631 1.7e-46 189.9 193 61.7
Sed0025717 Sechium edule HOM05D003237 ORTHO05D003631 1.7e-46 189.9 193 60.6
ClCG03G014170 Citrullus lanatus HOM05D003237 ORTHO05D003631 2.9e-46 189.1 193 61.1
Rhsim01G0196700 Rhododendron simsii HOM05D003237 ORTHO05D003631 3.8e-46 188.7 200 59.5
SalBow3G0543 Salvia bowleyana HOM05D003237 ORTHO05D003631 3.8e-46 188.7 191 61.3
EL10Ac7g16220 Beta vulgaris HOM05D003237 ORTHO05D003631 1.1e-45 187.2 185 61.1
Nitab4.5_0002300g0140 Nicotiana tabacum HOM05D003237 ORTHO05D003631 1.1e-45 187.2 196 57.1
MSTRG.17661 Avicennia marina HOM05D003237 ORTHO05D003631 1.5e-45 186.8 191 58.1
TAR636G1985 Trochodendron aralioides HOM05D003237 ORTHO05D003631 1.5e-45 186.8 191 61.3
Sed0018000 Sechium edule HOM05D003237 ORTHO05D003631 2.5e-45 186.0 185 60.5
MSTRG.12411 Avicennia marina HOM05D003237 ORTHO05D003631 4.2e-45 185.3 191 58.6
SGA_v2.0_scaffold16G07569 Striga asiatica HOM05D003237 ORTHO05D003631 5.5e-45 184.9 185 61.6
AUR62001612 Chenopodium quinoa HOM05D003237 ORTHO05D003631 7.2e-45 184.5 184 58.7
Hund20982 Selenicereus undatus HOM05D003237 ORTHO05D003631 7.2e-45 184.5 185 60.5
Ah.15g099440 Amaranthus hybridus HOM05D003237 ORTHO05D003631 9.4e-45 184.1 185 59.5
ECA240G0992 Erigeron canadensis HOM05D003237 ORTHO05D003631 9.4e-45 184.1 189 60.3
TWI31G0528 Tripterygium wilfordii HOM05D003237 ORTHO05D003631 2.7e-44 182.6 191 59.2
TWI75G1610 Tripterygium wilfordii HOM05D003237 ORTHO05D003631 6.1e-44 181.4 191 60.7
Aqoxy2G00072 Aquilegia oxysepala HOM05D003237 ORTHO05D003631 1.8e-43 179.9 196 58.2
TWI79G1622 Tripterygium wilfordii HOM05D003237 ORTHO05D003631 2.3e-43 179.5 191 58.6
ATR0618G315 Amborella trichopoda HOM05D003237 ORTHO05D003631 3.0e-43 179.1 202 57.9
GSVIVG01037454001 Vitis vinifera HOM05D003237 ORTHO05D003631 6.7e-43 177.9 192 58.3
CARHR119470 Cardamine hirsuta HOM05D003237 ORTHO05D003631 4.4e-42 175.3 115 80.9
Hund18830 Selenicereus undatus HOM05D003237 ORTHO05D003631 1.3e-41 173.7 185 59.5
Cfa010256 Carpinus fangiana HOM05D003237 ORTHO05D003631 2.8e-41 172.6 164 62.8
MD00G1031700 Malus domestica HOM05D003237 ORTHO05D003631 2.8e-41 172.6 193 58.0
Glyma.06G314900 Glycine max HOM05D003237 ORTHO05D003631 6.3e-41 171.4 190 56.8
Cfa010439 Carpinus fangiana HOM05D003237 ORTHO05D003631 1.4e-40 170.2 194 56.2
Gohir.D08G008600 Gossypium hirsutum HOM05D003237 ORTHO05D003631 1.4e-40 170.2 192 56.2
HanXRQChr03g0091691 Helianthus annuus HOM05D003237 ORTHO05D003631 1.4e-40 170.2 189 58.2
Ah.08g222820 Amaranthus hybridus HOM05D003237 ORTHO05D003631 1.8e-40 169.9 186 56.5
Glyma.04G128800 Glycine max HOM05D003237 ORTHO05D003631 1.8e-40 169.9 189 56.6
AUR62020168 Chenopodium quinoa HOM05D003237 ORTHO05D003631 2.4e-40 169.5 193 54.4
Gohir.A08G000080 Gossypium hirsutum HOM05D003237 ORTHO05D003631 2.4e-40 169.5 192 56.2
GSVIVG01027348001 Vitis vinifera HOM05D003237 ORTHO05D003631 3.1e-40 169.1 188 56.4
CiPaw.13G047600 Carya illinoinensis HOM05D003237 ORTHO05D003631 7.0e-40 167.9 194 56.7
Gorai.004G001800 Gossypium raimondii HOM05D003237 ORTHO05D003631 9.1e-40 167.5 192 55.2
HanXRQChr13g0420901 Helianthus annuus HOM05D003237 ORTHO05D003631 9.1e-40 167.5 189 57.7
Haze_03397 Corylus avellana HOM05D003237 ORTHO05D003631 1.6e-39 166.8 194 55.7
Gorai.013G266200 Gossypium raimondii HOM05D003237 ORTHO05D003631 1.6e-39 166.8 192 54.7
Duzib150G1090 Durio zibethinus HOM05D003237 ORTHO05D003631 2.7e-39 166.0 192 55.2
unitig_699.g19168 Utricularia gibba HOM05D003237 ORTHO05D003631 3.5e-39 165.6 180 56.1
PSO384G0529 Papaver somniferum HOM05D003237 ORTHO05D003631 7.7e-39 164.5 210 54.3
Migut.N02418 Erythranthe guttata HOM05D003237 ORTHO05D003631 1.0e-38 164.1 185 56.2
Oeu026659.2 Olea europaea HOM05D003237 ORTHO05D003631 1.7e-38 163.3 191 55.0
Haze_03393 Corylus avellana HOM05D003237 ORTHO05D003631 2.2e-38 162.9 191 55.0
PSO339G2307 Papaver somniferum HOM05D003237 ORTHO05D003631 2.2e-38 162.9 210 54.3
Gohir.D08G213400 Gossypium hirsutum HOM05D003237 ORTHO05D003631 2.9e-38 162.5 192 54.7
Gorai.004G227500 Gossypium raimondii HOM05D003237 ORTHO05D003631 2.9e-38 162.5 192 54.7
Migut.D00714 Erythranthe guttata HOM05D003237 ORTHO05D003631 3.8e-38 162.2 182 55.5
vmacro14291 Vaccinium macrocarpon HOM05D003237 ORTHO05D003631 1.1e-37 160.6 267 44.9
Phvul.011G187000 Phaseolus vulgaris HOM05D003237 ORTHO05D003631 1.5e-37 160.2 189 57.7
QL01p020379 Quercus lobata HOM05D003237 ORTHO05D003631 2.5e-37 159.5 252 45.2
CAN.G65.214 Capsicum annuum HOM05D003237 ORTHO05D003631 4.2e-37 158.7 189 54.5
QL04p050672 Quercus lobata HOM05D003237 ORTHO05D003631 4.2e-37 158.7 204 51.5
VMungo1127G0582 Vigna mungo HOM05D003237 ORTHO05D003631 9.4e-37 157.5 190 54.7
Lj3g0010266 Lotus japonicus HOM05D003237 ORTHO05D003631 8.0e-36 154.5 190 55.8
Gohir.A08G196300 Gossypium hirsutum HOM05D003237 ORTHO05D003631 1.0e-35 154.1 192 52.6
Peaxi162Scf00342g00121 Petunia axillaris HOM05D003237 ORTHO05D003631 1.0e-35 154.1 166 56.0
Glyma.08G227300 Glycine max HOM05D003237 ORTHO05D003631 1.4e-35 153.7 188 54.8
VMungo1080G0204 Vigna mungo HOM05D003237 ORTHO05D003631 1.4e-35 153.7 192 53.1
DCAR_002130 Daucus carota HOM05D003237 ORTHO05D003631 1.8e-35 153.3 209 50.7
Cc01_g07580 Coffea canephora HOM05D003237 ORTHO05D003631 3.0e-35 152.5 171 56.1
Lalb_Chr15g0079371 Lupinus albus HOM05D003237 ORTHO05D003631 4.0e-35 152.1 191 53.9
Medtr3g006760 Medicago truncatula HOM05D003237 ORTHO05D003631 4.0e-35 152.1 188 56.4
Medtr8g043980 Medicago truncatula HOM05D003237 ORTHO05D003631 8.8e-35 151.0 191 55.0
Ca_24120_v3 Cicer arietinum L. HOM05D003237 ORTHO05D003631 1.5e-34 150.2 188 55.3
Psat5g230400 Pisum sativum HOM05D003237 ORTHO05D003631 3.4e-34 149.1 190 54.7
Zm00001eb035820 Zea mays HOM05D003237 ORTHO05D003631 5.7e-34 148.3 195 50.8
Ca_30267_v3 Cicer arietinum L. HOM05D003237 ORTHO05D003631 7.5e-34 147.9 189 55.0
Peaxi162Scf00526g00069 Petunia axillaris HOM05D003237 ORTHO05D003631 7.5e-34 147.9 185 51.4
Ca_14021_v3 Cicer arietinum L. HOM05D003237 ORTHO05D003631 9.8e-34 147.5 188 54.8
CDE02G2326 Ceratophyllum demersum HOM05D003237 ORTHO05D003631 1.7e-33 146.7 196 53.6
Zm00001eb226730 Zea mays HOM05D003237 ORTHO05D003631 2.8e-33 146.0 198 51.0
Duzib168G1536 Durio zibethinus HOM05D003237 ORTHO05D003631 3.7e-33 145.6 225 47.1
Haze_23662 Corylus avellana HOM05D003237 ORTHO05D003631 4.8e-33 145.2 198 51.5
Psat4g168160 Pisum sativum HOM05D003237 ORTHO05D003631 6.3e-33 144.8 197 49.7
Phvul.005G010800 Phaseolus vulgaris HOM05D003237 ORTHO05D003631 8.3e-33 144.4 191 50.8
CANSAT56G4085 Cannabis sativa HOM05D003237 ORTHO05D003631 2.4e-32 142.9 187 54.5
Zm00001eb273040 Zea mays HOM05D003237 ORTHO05D003631 2.4e-32 142.9 193 49.7
Lalb_Chr19g0132581 Lupinus albus HOM05D003237 ORTHO05D003631 4.1e-32 142.1 199 51.8
Lalb_Chr03g0032411 Lupinus albus HOM05D003237 ORTHO05D003631 5.4e-32 141.7 192 53.1
arahy.Tifrunner.gnm1.ann1.MWA09F Arachis hypogaea HOM05D003237 ORTHO05D003631 4.5e-31 138.7 169 55.0
DCAR_031603 Daucus carota HOM05D003237 ORTHO05D003631 7.7e-31 137.9 174 52.3
Zm00001eb174730 Zea mays HOM05D003237 ORTHO05D003631 1.0e-30 137.5 199 48.7
Sc06g0008520 Simmondsia chinensis HOM05D003237 ORTHO05D003631 8.6e-30 134.4 186 50.5
Lj1A274G37 Lonicera japonica HOM05D003237 ORTHO05D003631 1.1e-29 134.0 147 55.1
TPR.G25034 Trifolium pratense HOM05D003237 ORTHO05D003631 2.1e-28 129.8 190 50.5
HPP92_015378 Vanilla planifolia HOM05D003237 ORTHO05D003631 2.8e-28 129.4 195 49.2
PSO675G8789 Papaver somniferum HOM05D003237 ORTHO05D003631 6.1e-28 128.3 207 49.8
Os06g0698859 Oryza sativa ssp. japonica HOM05D003237 ORTHO05D003631 1.0e-27 127.5 198 46.5
unitig_27.g25020 Utricularia gibba HOM05D003237 ORTHO05D003631 2.3e-27 126.3 167 50.3
TPR.G25518 Trifolium pratense HOM05D003237 ORTHO05D003631 3.0e-27 125.9 119 64.7
arahy.Tifrunner.gnm1.ann1.F9X6AJ Arachis hypogaea HOM05D003237 ORTHO05D003631 8.8e-27 124.4 176 50.0
SEGI_16115 Sequoiadendron giganteum HOM05D003237 ORTHO05D003631 8.8e-27 124.4 219 45.2
Lsat_1_v5_gn_3_116081 Lactuca sativa HOM05D003237 ORTHO05D003631 5.7e-26 121.7 168 51.8
Oeu022227.1 Olea europaea HOM05D003237 ORTHO05D003631 3.5e-23 112.5 148 52.0
SMO118G0495 Selaginella moellendorffii HOM05D003237 ORTHO05D003631 5.9e-23 111.7 194 42.8
Psat2g029240 Pisum sativum HOM05D002119 ORTHO05D003631 6.1e-20 101.7 99 53.5
AagrBONN_evm.TU.Sc2ySwM_228.971 Anthoceros agrestis HOM05D004178 ORTHO05D005204 1.8e-19 100.1 228 40.8
Pp3c25_7680 Physcomitrium patens HOM05D003237 ORTHO05D003631 1.1e-16 90.9 268 35.8
Pp3c16_11390 Physcomitrium patens HOM05D003237 ORTHO05D003631 2.0e-15 86.7 270 34.4
Mapoly0065s0067 Marchantia polymorpha HOM05D003237 ORTHO05D003631 1.2e-12 77.4 275 33.8
CiPaw.14G037800 Carya illinoinensis HOM05D003237 ORTHO05D003631 3.4e-10 69.3 113 47.8
Os02g0149600 Oryza sativa ssp. japonica HOM05D003237 ORTHO05D003631 3.5e-07 59.3 181 32.6
Lj3g0000355 Lotus japonicus HOM05D003237 ORTHO05D003631 2.3e-06 56.6 108 46.3


User provided reference genes

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