Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1813.5 957 100.0
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1798.5 957 99.5
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1697.6 958 94.1
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1694.9 957 94.1
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1693.3 957 94.0
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1693.3 957 94.0
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1684.1 958 93.6
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1682.9 958 93.6
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1658.7 957 90.5
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1657.1 957 91.0
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1647.9 957 90.8
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1640.9 957 91.6
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1640.2 957 90.6
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1634.8 958 90.6
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1545.8 965 85.1
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1434.1 973 78.9
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1267.7 982 69.6
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1249.6 995 67.5
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1246.5 987 68.0
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1245.0 975 67.8
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1237.6 990 66.9
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1236.5 996 67.7
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1234.6 988 67.2
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1233.8 992 66.5
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1233.4 969 68.0
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1233.4 969 68.0
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1231.9 1051 64.5
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1230.3 973 68.6
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1229.5 999 67.7
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1228.0 972 68.4
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1227.2 1043 65.3
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1225.3 1038 66.3
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1224.9 1045 65.3
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1224.9 967 67.7
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1224.9 987 66.5
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1221.5 1030 65.2
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1218.4 971 68.6
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1214.5 1023 65.9
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1214.1 995 66.8
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1213.4 985 67.1
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1212.6 1038 65.0
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1208.4 1028 65.7
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1205.7 965 67.9
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1203.7 976 67.1
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1198.0 1063 62.6
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1193.7 995 65.9
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1193.7 971 66.2
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1193.7 992 65.2
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1190.3 983 65.9
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1186.8 989 65.4
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1186.0 1044 63.1
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1185.6 966 67.0
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1183.7 968 66.7
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1181.8 994 65.3
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1175.6 968 66.1
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1175.6 969 65.8
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1174.8 966 66.6
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1174.1 969 66.6
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1173.3 987 65.9
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1171.8 982 66.1
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1166.8 981 64.3
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1164.4 967 65.3
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1163.3 966 65.2
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1161.7 974 65.7
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1161.0 988 65.4
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1158.7 998 64.6
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1154.0 978 65.5
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1153.3 1021 62.8
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1140.9 1012 62.8
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1137.1 1037 61.5
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1135.6 967 64.5
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1129.8 1045 61.6
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1127.5 996 62.6
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1125.9 978 64.0
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1124.0 1165 56.4
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1115.1 901 68.0
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1107.8 992 61.7
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1097.4 980 63.0
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1080.9 965 61.1
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 6.5e-312 1073.5 822 70.4
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 2.5e-309 1065.4 975 60.7
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.8e-304 1049.3 994 56.5
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 3.2e-301 1038.5 987 59.4
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 3.9e-299 1031.6 994 58.0
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 2.0e-298 1029.2 1006 56.9
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 7.4e-298 1027.3 885 64.7
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 7.2e-293 1010.7 835 66.3
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 7.4e-290 1000.7 852 65.6
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 3.0e-275 952.2 972 57.8
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 4.8e-273 944.9 969 56.9
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 4.0e-267 925.2 997 52.3
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 4.5e-263 911.8 1065 48.8
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 4.3e-261 905.2 1058 50.2
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 1.2e-258 897.1 998 53.3
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 6.6e-254 881.3 972 50.5
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 4.7e-228 795.4 760 60.5
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.2e-207 727.6 704 58.1
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 4.0e-203 712.6 595 63.7
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.1e-195 688.0 600 62.5
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 3.4e-194 682.9 788 53.6
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 1.4e-184 651.0 934 45.2
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 1.5e-181 641.0 549 65.4
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 1.1e-168 598.2 653 53.4
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 2.8e-164 583.6 560 58.2
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 3.7e-156 556.6 962 35.6
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 3.5e-130 470.3 389 64.5
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 9.5e-128 462.2 379 62.5
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 3.2e-123 447.2 290 79.3
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.4e-118 431.8 270 80.0
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 2.6e-117 427.6 989 31.2
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 1.3e-116 425.2 269 79.6
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.9e-116 423.3 304 69.1
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 4.1e-115 420.2 276 76.8
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 1.2e-109 402.1 364 58.2
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 2.1e-106 391.3 360 59.7
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 1.7e-105 388.3 912 31.9
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 1.9e-104 384.8 1296 27.6
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 9.9e-93 345.9 353 50.7
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 1.6e-79 302.0 223 71.7
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 6.9e-78 296.6 168 84.5
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 9.0e-78 296.2 290 53.8
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 7.9e-66 256.5 250 56.0
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.3e-64 251.1 204 60.3
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 2.6e-61 241.5 145 81.4
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 7.7e-61 240.0 206 61.7
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 2.0e-56 225.3 151 76.2
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.0e-53 215.3 144 72.2
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 8.0e-50 203.4 206 54.4
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.3e-46 190.7 129 70.5
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 7.0e-46 190.3 217 52.5
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 5.0e-44 184.1 214 53.3
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.1e-43 183.0 129 68.2
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 3.2e-43 181.4 104 83.7
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.0e-41 174.5 131 67.2
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 5.7e-40 170.6 161 57.8
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 1.8e-38 165.6 98 79.6
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 9.5e-35 153.3 122 66.4
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 2.6e-32 145.2 204 48.5
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.9e-31 141.0 101 66.3
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 2.0e-24 119.0 85 65.9
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 5.8e-24 117.5 166 41.0
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 2.0e-21 109.0 85 60.0
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 4.6e-21 107.8 138 46.4
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 3.2e-14 85.1 42 92.9
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 5.8e-08 64.3 44 72.7


User provided reference genes

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