Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0001_1020 Schrenkiella parvula HOM05D000104 ORTHO05D021072 1.8e-56 222.2 106 100.0
Sp5g05300 Schrenkiella parvula HOM05D000104 ORTHO05D005891 1.5e-37 159.5 102 78.4
C08p32710 Brassica napus HOM05D000104 ORTHO05D005891 1.1e-29 133.3 102 64.7
A09p50220 Brassica napus HOM05D000104 ORTHO05D005891 3.3e-29 131.7 102 63.7
BraA09t40472Z Brassica rapa HOM05D000104 ORTHO05D005891 3.3e-29 131.7 102 63.7
BolC8t50882H Brassica oleracea HOM05D000104 ORTHO05D005891 7.5e-26 120.6 101 61.4
AL5G38840 Arabidopsis lyrata HOM05D000104 ORTHO05D005891 1.9e-24 115.9 100 63.0
Aa31LG10G12170 Aethionema arabicum HOM05D000104 ORTHO05D005891 4.1e-24 114.8 103 61.2
AT3G57300 Arabidopsis thaliana HOM05D000104 ORTHO05D005891 4.1e-24 114.8 100 61.0
BcaC07g40057 Brassica carinata HOM05D000104 ORTHO05D005891 5.4e-24 114.4 93 61.3
CARHR167500 Cardamine hirsuta HOM05D000104 ORTHO05D005891 9.2e-24 113.6 100 61.0
Thhalv10005740m.g Eutrema salsugineum HOM05D000104 ORTHO05D005891 9.2e-24 113.6 103 58.3
Carub.0001s3808 Capsella rubella HOM05D000104 ORTHO05D005891 4.7e-20 101.3 98 57.1
THA.LOC104801997 Tarenaya hassleriana HOM05D000104 ORTHO05D005891 8.9e-19 97.1 105 51.4
Manes.09G018100 Manihot esculenta HOM05D000104 ORTHO05D005891 7.8e-15 84.0 101 45.5
THA.LOC104817420 Tarenaya hassleriana HOM05D000104 ORTHO05D005891 1.7e-14 82.8 99 49.5
Gohir.D09G117100 Gossypium hirsutum HOM05D000104 ORTHO05D005891 4.3e-13 78.2 101 40.6
Gorai.006G135500 Gossypium raimondii HOM05D000104 ORTHO05D005891 9.5e-13 77.0 100 39.0
RcHm_v2.0_Chr3g0483871 Rosa chinensis HOM05D000104 ORTHO05D005891 3.6e-12 75.1 97 44.3
Potri.006G047100 Populus trichocarpa HOM05D000104 ORTHO05D005891 8.1e-12 73.9 98 43.9
BraA04t16042Z Brassica rapa HOM05D000104 ORTHO05D005891 1.4e-11 73.2 108 43.5
MELO3C026332.2 Cucumis melo HOM05D000104 ORTHO05D005891 2.3e-11 72.4 98 37.8
Atru.chr1.1228 Acer truncatum HOM05D000104 ORTHO05D021072 3.1e-11 72.0 97 41.2
ClCG04G003710 Citrullus lanatus HOM05D000104 ORTHO05D005891 5.2e-11 71.2 98 38.8
CsaV3_4G027520 Cucumis sativus L. HOM05D000104 ORTHO05D005891 5.2e-11 71.2 98 36.7
MD11G1158800 Malus domestica HOM05D000104 ORTHO05D005891 5.2e-11 71.2 100 42.0
Thecc.05G148000 Theobroma cacao HOM05D000104 ORTHO05D005891 5.2e-11 71.2 105 39.0
BcaC07g40059 Brassica carinata HOM05D000104 ORTHO05D021072 6.8e-11 70.9 55 63.6
Potri.016G043500 Populus trichocarpa HOM05D000104 ORTHO05D005891 8.9e-11 70.5 100 41.0
Sed0002389 Sechium edule HOM05D000104 ORTHO05D005891 8.9e-11 70.5 98 38.8
VMungo1383G1381 Vigna mungo HOM05D000104 ORTHO05D005891 1.2e-10 70.1 97 39.2
A04p03200 Brassica napus HOM05D000104 ORTHO05D005891 1.5e-10 69.7 104 43.3
Ciclev10004142m.g Citrus clementina HOM05D000104 ORTHO05D005891 1.5e-10 69.7 99 40.4
Cc06_g18110 Coffea canephora HOM05D000104 ORTHO05D005891 1.5e-10 69.7 106 41.5
Glyma.19G136000 Glycine max HOM05D000104 ORTHO05D005891 1.5e-10 69.7 95 41.1
CiPaw.09G040400 Carya illinoinensis HOM05D000104 ORTHO05D005891 3.4e-10 68.6 97 42.3
BcaC02g09928 Brassica carinata HOM05D000104 ORTHO05D021072 5.8e-10 67.8 65 55.4
CSS0030896 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005891 7.6e-10 67.4 106 38.7
Eucgr.A02310 Eucalyptus grandis HOM05D000104 ORTHO05D005891 9.9e-10 67.0 96 38.5
PGR004G1210 Punica granatum HOM05D000104 ORTHO05D005891 9.9e-10 67.0 99 40.4
arahy.Tifrunner.gnm1.ann1.NU01L9 Arachis hypogaea HOM05D000104 ORTHO05D005891 1.3e-09 66.6 97 37.1
EL10Ac3g07138 Beta vulgaris HOM05D000104 ORTHO05D005891 1.3e-09 66.6 105 38.1
Sabra06G0032800 Salix brachista HOM05D000104 ORTHO05D005891 1.3e-09 66.6 90 43.3
CiPaw.10G035500 Carya illinoinensis HOM05D000104 ORTHO05D005891 1.7e-09 66.2 106 36.8
Haze_19788 Corylus avellana HOM05D000104 ORTHO05D005891 1.7e-09 66.2 106 35.8
Haze_19790 Corylus avellana HOM05D000104 ORTHO05D005891 1.7e-09 66.2 106 35.8
arahy.Tifrunner.gnm1.ann1.KD6P16 Arachis hypogaea HOM05D000104 ORTHO05D005891 2.2e-09 65.9 97 36.1
GSVIVG01033231001 Vitis vinifera HOM05D000104 ORTHO05D005891 2.9e-09 65.5 97 37.1
Cpa.g.sc182.16 Carica papaya HOM05D000104 ORTHO05D005891 4.9e-09 64.7 105 35.2
Cfa016778 Carpinus fangiana HOM05D000104 ORTHO05D005891 4.9e-09 64.7 107 36.4
Ca_12259_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005891 6.4e-09 64.3 100 42.0
QL07p003748 Quercus lobata HOM05D000104 ORTHO05D005891 6.4e-09 64.3 105 37.1
Nitab4.5_0001618g0170 Nicotiana tabacum HOM05D000104 ORTHO05D005891 1.1e-08 63.5 105 36.2
Dinv39659 Davidia involucrata HOM05D000104 ORTHO05D005891 1.9e-08 62.8 110 34.5
SalBow1G3151 Salvia bowleyana HOM05D000104 ORTHO05D005891 1.9e-08 62.8 100 36.0
Psat6g121600 Pisum sativum HOM05D000104 ORTHO05D005891 2.4e-08 62.4 98 37.8
Lalb_Chr25g0287091 Lupinus albus HOM05D000104 ORTHO05D005891 5.4e-08 61.2 93 37.6
C04p35080 Brassica napus HOM05D000104 ORTHO05D005891 7.1e-08 60.8 56 57.1
BolC4t25064H Brassica oleracea HOM05D000104 ORTHO05D005891 7.1e-08 60.8 56 57.1
Glyma.03G133700 Glycine max HOM05D000104 ORTHO05D005891 7.1e-08 60.8 97 39.2
vmacro21967 Vaccinium macrocarpon HOM05D000104 ORTHO05D005891 7.1e-08 60.8 98 39.8
Ca_08427_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005891 9.2e-08 60.5 100 35.0
Nitab4.5_0000826g0080 Nicotiana tabacum HOM05D000104 ORTHO05D005891 9.2e-08 60.5 102 35.3
Rhsim03G0029000 Rhododendron simsii HOM05D000104 ORTHO05D005891 9.2e-08 60.5 106 35.8
AUR62024511 Chenopodium quinoa HOM05D000104 ORTHO05D005891 1.6e-07 59.7 107 38.3
Lalb_Chr01g0017271 Lupinus albus HOM05D000104 ORTHO05D005891 1.6e-07 59.7 97 36.1
TWI74G1174 Tripterygium wilfordii HOM05D000104 ORTHO05D005891 2.7e-07 58.9 98 35.7
TPR.G19660 Trifolium pratense HOM05D000104 ORTHO05D005891 3.5e-07 58.5 103 36.9
MSTRG.10809 Avicennia marina HOM05D000104 ORTHO05D005891 4.6e-07 58.2 101 37.6
Glyma.10G106500 Glycine max HOM05D000104 ORTHO05D005891 4.6e-07 58.2 102 34.3
FAN02G4202 Fragaria x ananassa HOM05D000104 ORTHO05D005891 6.0e-07 57.8 100 37.0
FAN05G2243 Fragaria x ananassa HOM05D000104 ORTHO05D005891 6.0e-07 57.8 100 37.0
Lalb_Chr21g0316591 Lupinus albus HOM05D000104 ORTHO05D005891 7.8e-07 57.4 94 42.6
Nitab4.5_0000636g0040 Nicotiana tabacum HOM05D000104 ORTHO05D021072 1.3e-06 56.6 106 34.9
AUR62026097 Chenopodium quinoa HOM05D000104 ORTHO05D005891 1.7e-06 56.2 105 35.2
CAN.G1237.14 Capsicum annuum HOM05D000104 ORTHO05D005891 3.0e-06 55.5 100 33.0
Sopen04g008460 Solanum pennellii HOM05D000104 ORTHO05D005891 3.0e-06 55.5 105 32.4
TPR.G18256 Trifolium pratense HOM05D000104 ORTHO05D005891 3.0e-06 55.5 99 33.3
Nn2g15125 Nelumbo nucifera HOM05D000104 ORTHO05D005891 3.9e-06 55.1 123 35.0
arahy.Tifrunner.gnm1.ann1.EUAM8L Arachis hypogaea HOM05D000104 ORTHO05D005891 5.1e-06 54.7 106 34.9
FAN09G4422 Fragaria x ananassa HOM05D000104 ORTHO05D005891 5.1e-06 54.7 100 36.0
FAN14G5411 Fragaria x ananassa HOM05D000104 ORTHO05D005891 5.1e-06 54.7 100 36.0
Lj1g0026239 Lotus japonicus HOM05D000104 ORTHO05D005891 5.1e-06 54.7 99 35.4
Psat3g074520 Pisum sativum HOM05D000104 ORTHO05D005891 6.6e-06 54.3 95 33.7
Hund19132 Selenicereus undatus HOM05D000104 ORTHO05D005891 8.6e-06 53.9 106 33.0
Solyc04g016370.3 Solanum lycopersicum HOM05D000104 ORTHO05D005891 8.6e-06 53.9 105 32.4


User provided reference genes

Program Settings