Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 2693.3 1452 100.0
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 2371.7 1442 89.3
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 2327.0 1443 87.6
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 2325.8 1441 86.2
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 2309.6 1453 84.9
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 2307.7 1442 87.5
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2303.5 1451 84.5
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2297.3 1455 84.5
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 2286.9 1441 85.6
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 2286.5 1452 83.9
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2281.1 1453 84.3
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 2278.1 1455 84.3
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2271.9 1455 84.1
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 2271.9 1455 84.1
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 2270.7 1475 83.5
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 2248.4 1444 86.1
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1871.7 1459 71.2
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1854.3 1446 72.5
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1755.7 1462 68.3
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1509.6 950 85.7
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 1473.8 1506 57.0
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 1469.1 1472 58.0
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 1442.6 1497 56.1
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1438.3 1480 57.0
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1435.6 1501 56.4
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 1431.0 1501 56.2
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 1424.5 1469 56.5
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 1415.2 1525 55.1
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1414.1 1482 56.6
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1401.0 1547 54.1
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1396.3 1493 55.8
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 1393.6 1456 56.8
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 1385.2 1463 56.1
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1384.4 1469 55.3
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1382.9 1461 56.1
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1382.1 1463 56.0
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 1378.2 1466 56.5
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1377.8 1518 54.6
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1371.3 1542 54.3
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1369.0 1518 53.9
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 1368.6 1511 55.3
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 1359.7 1467 55.2
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1358.2 1486 55.7
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1355.5 1515 54.0
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1353.2 1494 54.8
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1353.2 1493 54.9
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1347.8 1464 55.5
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1347.8 1423 56.8
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1346.3 1461 55.2
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 1340.5 1418 56.2
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1337.8 1500 54.1
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1336.6 1480 53.9
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1333.5 1508 54.8
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1333.5 1467 54.0
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 1333.2 1507 54.1
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 1332.4 1518 52.8
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 1323.9 1497 52.9
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 1321.6 1510 52.6
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1314.3 1487 54.1
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1311.6 1457 55.0
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1308.9 1493 54.5
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1307.7 1479 53.1
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 1307.4 1527 52.5
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1306.2 1485 54.5
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 1292.7 1540 51.6
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1288.1 1462 53.1
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1281.5 1467 53.7
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 1278.1 1523 52.1
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 1277.7 1602 49.6
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1276.2 1556 50.5
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 1269.6 1512 51.7
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 1268.1 1505 52.7
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1262.3 1510 51.7
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1260.4 1440 53.1
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 1259.6 1500 52.5
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 1255.4 1506 52.5
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1253.0 1333 55.9
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1250.7 1455 52.9
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1241.5 1502 51.0
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 1234.6 1419 52.6
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1234.2 1497 51.0
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1233.8 1475 51.1
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1231.9 1497 51.9
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1231.5 1512 50.9
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1228.0 1494 51.3
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1220.7 1520 49.4
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1219.9 1447 51.2
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1217.6 1436 52.1
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1217.2 1510 51.7
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1216.8 1466 51.2
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1216.8 1486 53.0
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 1215.7 1543 50.4
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1212.6 1531 49.8
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1206.8 1458 51.3
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1205.7 1498 51.0
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1186.0 1489 50.6
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1184.9 1246 56.5
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1180.2 1499 49.2
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1172.5 1492 50.1
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1163.3 1430 50.4
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1156.4 1532 48.8
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1145.6 1468 49.0
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1136.7 1489 48.2
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1124.0 1443 49.1
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1121.7 1539 47.0
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1119.0 1209 56.2
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1109.7 1530 48.1
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1085.1 1505 46.2
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 2.2e-309 1066.2 1513 44.9
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 1.9e-284 983.4 1488 44.0
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 1.3e-282 977.2 1515 43.6
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 2.4e-279 966.5 1369 46.8
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 6.6e-274 948.3 1553 42.2
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 1.2e-254 884.4 922 54.4
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 3.4e-246 856.3 1560 39.8
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 1.2e-243 847.8 1551 40.1
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 1.2e-243 847.8 1551 40.1
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 2.1e-243 847.0 1513 39.6
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 2.8e-240 836.6 1512 39.6
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 8.2e-240 835.1 911 55.5
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 6.5e-237 825.5 1465 41.3
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 3.5e-230 803.1 1480 41.1
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.2e-216 757.3 786 54.5
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 3.4e-177 627.1 488 75.8
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 3.5e-174 617.1 1472 34.2
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.6e-158 565.1 1140 37.5
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.2e-137 495.7 678 49.1
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.5e-129 468.8 1197 32.7
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.2e-119 434.1 598 48.8
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 5.7e-108 397.1 533 50.5
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 2.9e-104 384.8 356 57.3
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 7.3e-87 327.0 423 47.3
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 3.0e-85 321.6 500 47.6
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 6.8e-85 320.5 601 36.1
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.4e-74 285.4 443 39.3
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.1e-66 260.0 425 44.7
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 3.4e-52 211.8 879 25.5
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.2e-49 203.4 222 55.0
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.9e-47 196.1 414 39.6
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 4.3e-47 194.9 280 42.5
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 2.6e-44 185.7 152 67.1
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 1.1e-37 163.7 189 56.1
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 3.5e-33 148.7 369 34.7
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 6.0e-33 147.9 537 28.1
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 6.2e-30 137.9 565 27.1
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 3.0e-24 119.0 132 50.8
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 2.5e-23 115.9 339 36.6
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.5e-20 106.7 227 35.7
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.5e-19 101.3 120 50.8
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.2e-17 97.1 335 32.2
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 3.3e-15 89.0 109 46.8
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 9.1e-13 80.9 103 49.5
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 7.7e-12 77.8 62 69.4
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 7.7e-12 77.8 62 69.4
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 5.5e-10 71.6 80 51.2
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 3.3e-07 62.4 76 48.7
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 3.7e-06 58.9 60 51.7
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 8.2e-06 57.8 80 40.0


User provided reference genes

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