Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 1.7e-227 792.3 412 100.0
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 1.1e-144 517.3 422 69.7
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 5.0e-126 455.3 393 61.6
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 4.9e-121 438.7 431 61.9
BcaC09g50676 Brassica carinata HOM05D004448 ORTHO05D015948 1.6e-119 433.7 416 64.2
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 1.6e-119 433.7 416 64.2
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 7.2e-117 424.9 337 66.2
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 3.9e-110 402.5 414 57.5
BcaNung02444 Brassica carinata HOM05D004448 ORTHO05D015948 1.1e-109 401.0 422 59.0
A01p17460 Brassica napus HOM05D004448 ORTHO05D015948 1.8e-107 393.7 381 59.3
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 1.6e-100 370.5 359 62.7
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 5.8e-98 362.1 441 55.1
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 5.4e-80 302.4 497 41.2
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 3.9e-78 296.2 485 40.6
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 6.6e-78 295.4 511 44.0
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 2.1e-76 290.4 505 38.8
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 2.8e-76 290.0 516 40.9
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 2.6e-74 283.5 511 41.7
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 4.4e-74 282.7 506 41.5
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 5.8e-74 282.3 454 41.9
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 9.9e-74 281.6 509 41.7
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 2.9e-73 280.0 510 42.2
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 4.9e-73 279.3 511 41.3
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 5.4e-72 275.8 510 42.0
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 5.4e-72 275.8 512 41.8
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 8.7e-70 268.5 460 44.1
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 4.8e-68 262.7 482 38.2
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 1.1e-67 261.5 486 39.3
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 3.1e-67 260.0 487 38.0
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 3.4e-66 256.5 479 38.4
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 4.8e-60 236.1 501 38.7
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 4.4e-29 133.3 352 33.5
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 2.4e-27 127.5 101 58.4
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 6.5e-25 119.4 440 27.5
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 8.0e-23 112.5 488 24.8
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 1.4e-22 111.7 191 35.6
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 1.8e-22 111.3 225 32.0
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 4.0e-22 110.2 281 33.1
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.0e-22 110.2 472 25.2
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 1.2e-21 108.6 538 24.3
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 2.0e-21 107.8 258 31.0
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 2.0e-21 107.8 281 30.6
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 2.0e-21 107.8 242 33.5
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 2.6e-21 107.5 433 24.5
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 2.6e-21 107.5 476 25.4
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 3.3e-21 107.1 272 30.1
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.4e-21 106.7 472 25.4
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 9.7e-21 105.5 262 30.2
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 1.3e-20 105.1 330 29.1
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 2.8e-20 104.0 271 34.3
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 2.8e-20 104.0 256 31.2
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.7e-20 103.6 252 30.2
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 3.7e-20 103.6 225 32.4
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 6.3e-20 102.8 309 29.1
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 1.1e-19 102.1 383 27.7
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.8e-19 101.3 264 28.8
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 3.1e-19 100.5 316 26.9
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 7.0e-19 99.4 538 23.8
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.2e-18 98.6 260 30.8
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 3.5e-18 97.1 264 30.3
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 4.5e-18 96.7 272 32.0
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.3e-17 95.1 258 33.7
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.3e-17 95.1 290 29.0
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 5.0e-17 93.2 218 31.7
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 8.5e-17 92.4 313 29.1
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 1.1e-16 92.0 404 27.0
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.1e-16 92.0 255 33.7
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.1e-16 92.0 376 26.1
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 4.2e-16 90.1 244 29.1
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 4.2e-16 90.1 183 31.7
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 9.4e-16 89.0 194 32.0
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 9.4e-16 89.0 403 25.6
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 9.4e-16 89.0 405 24.2
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.6e-15 88.2 176 35.8
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 2.1e-15 87.8 403 26.6
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 2.1e-15 87.8 256 27.3
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 2.1e-15 87.8 160 35.6
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 8.0e-15 85.9 476 23.1
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.4e-14 85.1 313 27.2
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 3.0e-14 84.0 214 29.4
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 4.0e-14 83.6 118 40.7
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 5.2e-14 83.2 313 26.8
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 5.2e-14 83.2 108 41.7
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.8e-14 82.8 241 30.3
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.5e-13 81.6 119 41.2
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 2.0e-13 81.3 211 28.0
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 2.0e-13 81.3 275 28.4
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.6e-13 80.9 156 35.3
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.4e-13 80.5 120 39.2
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.4e-13 80.5 120 39.2
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 3.4e-13 80.5 216 30.1
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 4.4e-13 80.1 157 33.8
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 7.5e-13 79.3 438 23.3
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 1.3e-12 78.6 267 27.0
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.3e-12 78.6 94 43.6
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 1.7e-12 78.2 156 32.1
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 2.2e-12 77.8 182 31.3
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 2.2e-12 77.8 274 27.7
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 2.8e-12 77.4 145 33.1
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 6.3e-12 76.3 240 27.5
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 6.3e-12 76.3 139 32.4
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 1.4e-11 75.1 330 25.2
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 2.4e-11 74.3 219 28.3
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 4.1e-11 73.6 246 26.8
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 4.1e-11 73.6 219 28.3
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 1.2e-10 72.0 158 34.2
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 1.6e-10 71.6 216 31.9
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 2.0e-10 71.2 221 27.1
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 2.0e-10 71.2 460 23.0
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 3.5e-10 70.5 423 23.9
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 1.0e-09 68.9 117 32.5
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 5.0e-09 66.6 125 34.4
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.1e-08 65.5 92 39.1
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 1.1e-08 65.5 172 29.7
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 1.5e-08 65.1 146 30.1
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.9e-08 64.7 88 46.6
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 4.2e-08 63.5 125 34.4
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 2.1e-07 61.2 116 31.0
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 2.7e-07 60.8 122 32.0
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 2.7e-07 60.8 98 36.7
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.7e-07 60.1 138 31.9
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.4e-06 58.5 204 27.5
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 2.3e-06 57.8 123 29.3
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 4.0e-06 57.0 101 34.7


User provided reference genes

Program Settings