Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 3.8e-161 571.6 325 100.0
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.8e-150 536.2 325 92.0
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 8.2e-148 527.3 325 92.3
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 1.8e-147 526.2 325 92.0
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 1.2e-146 523.5 325 91.7
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.2e-146 523.5 325 92.3
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 1.0e-145 520.4 322 93.2
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 1.0e-145 520.4 322 93.2
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 7.2e-144 514.2 322 92.2
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 9.4e-144 513.8 322 91.9
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 3.6e-143 511.9 322 91.9
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 3.6e-143 511.9 322 91.9
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 3.3e-141 505.4 325 89.8
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 7.4e-141 504.2 329 86.9
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.4e-134 483.4 327 85.0
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 3.0e-134 482.3 326 86.5
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 8.8e-134 480.7 301 92.0
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 1.5e-133 479.9 325 84.9
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 5.7e-133 478.0 326 84.0
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 7.4e-133 477.6 325 84.6
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 1.3e-132 476.9 325 84.9
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 2.8e-132 475.7 325 84.9
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 2.8e-132 475.7 325 84.9
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 6.3e-132 474.6 325 85.2
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 6.3e-132 474.6 325 85.2
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 3.1e-131 472.2 325 82.5
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 2.9e-129 465.7 327 82.0
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 7.2e-128 461.1 282 92.6
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.8e-126 456.4 322 82.9
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.1e-125 453.8 321 81.9
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 2.6e-125 452.6 326 81.6
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.3e-124 450.3 325 81.5
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 1.3e-121 440.3 327 78.6
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 1.5e-120 436.8 326 78.8
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 7.2e-120 434.5 326 77.6
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.2e-119 433.7 326 77.0
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 6.1e-119 431.4 328 78.0
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 4.0e-118 428.7 326 76.1
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 2.8e-116 422.5 326 75.8
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.8e-116 422.5 326 75.8
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 1.4e-115 420.2 326 75.2
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 4.1e-115 418.7 329 73.6
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 4.1e-115 418.7 326 75.2
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 5.4e-115 418.3 328 74.4
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 1.2e-114 417.2 328 75.9
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 1.6e-114 416.8 326 75.8
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 4.5e-114 415.2 329 75.4
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 5.9e-114 414.8 327 74.9
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 7.7e-114 414.5 326 75.5
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 1.0e-113 414.1 326 75.2
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.3e-113 413.7 328 74.1
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 2.9e-113 412.5 328 75.3
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 6.5e-113 411.4 334 73.7
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 6.5e-113 411.4 333 71.5
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 6.5e-113 411.4 328 74.7
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 6.5e-113 411.4 327 74.6
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 8.5e-113 411.0 327 73.1
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.1e-112 410.6 321 73.8
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 1.1e-112 410.6 286 81.8
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 1.5e-112 410.2 325 72.9
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 1.9e-112 409.8 328 73.2
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 2.5e-112 409.5 328 74.1
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 4.2e-112 408.7 330 73.9
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 4.2e-112 408.7 326 75.5
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 7.2e-112 407.9 326 74.2
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 9.4e-112 407.5 336 72.3
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 1.6e-111 406.8 334 73.1
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.6e-111 406.8 330 73.9
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 2.1e-111 406.4 328 73.5
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.1e-111 406.4 326 73.3
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 2.1e-111 406.4 360 69.2
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 2.7e-111 406.0 333 73.0
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 2.7e-111 406.0 340 72.6
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 3.6e-111 405.6 329 72.6
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 4.7e-111 405.2 329 73.3
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 6.1e-111 404.8 329 74.2
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 6.1e-111 404.8 329 73.6
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 8.0e-111 404.4 328 73.8
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 8.0e-111 404.4 333 72.7
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 8.0e-111 404.4 328 73.2
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 1.0e-110 404.1 330 72.1
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 1.4e-110 403.7 326 73.0
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.4e-110 403.7 328 73.2
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.3e-110 402.9 329 72.9
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 2.3e-110 402.9 326 73.6
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 2.3e-110 402.9 325 74.8
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 3.0e-110 402.5 326 73.6
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 4.0e-110 402.1 338 71.3
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 8.8e-110 401.0 323 74.0
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.5e-109 400.2 326 72.1
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 2.6e-109 399.4 332 72.3
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 3.4e-109 399.1 326 71.8
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 4.4e-109 398.7 326 70.9
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 5.7e-109 398.3 321 72.3
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 9.8e-109 397.5 326 70.9
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 2.2e-108 396.4 335 70.4
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 2.2e-108 396.4 316 74.7
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.8e-108 396.0 321 71.3
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 2.8e-108 396.0 328 72.3
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 3.7e-108 395.6 326 73.6
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 1.1e-107 394.0 330 73.0
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 1.1e-107 394.0 326 72.1
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 1.8e-107 393.3 327 71.3
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 2.4e-107 392.9 324 71.3
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 3.1e-107 392.5 328 71.3
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 5.4e-107 391.7 327 72.8
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 7.0e-107 391.3 329 72.0
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 9.2e-107 391.0 277 77.6
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 1.6e-106 390.2 328 70.1
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 5.9e-106 388.3 329 71.7
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 5.9e-106 388.3 330 70.6
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 2.9e-105 386.0 317 72.2
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 2.9e-105 386.0 326 70.9
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 3.8e-105 385.6 329 72.6
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 5.0e-105 385.2 330 72.1
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 8.6e-105 384.4 277 77.6
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 1.1e-104 384.0 326 71.8
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 1.5e-104 383.6 380 64.7
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 1.5e-104 383.6 325 68.3
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 4.3e-104 382.1 325 71.7
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 5.6e-104 381.7 329 69.3
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 2.8e-103 379.4 231 94.4
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 4.7e-103 378.6 331 69.2
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 6.1e-103 378.3 317 72.2
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 3.0e-102 375.9 329 70.8
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 6.8e-102 374.8 254 83.9
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 8.9e-102 374.4 325 71.1
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.0e-101 373.2 327 67.9
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 1.7e-100 370.2 326 69.6
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.4e-99 366.3 257 72.0
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.2e-99 365.9 304 72.0
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 1.2e-98 364.0 262 82.1
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.0e-98 363.2 311 63.3
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.0e-97 360.9 292 72.6
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 5.0e-97 358.6 275 75.6
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 2.5e-96 356.3 300 70.3
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 1.6e-95 353.6 311 68.2
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 3.6e-95 352.4 318 66.7
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.8e-94 350.1 301 71.8
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 2.3e-94 349.7 280 73.2
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 8.9e-94 347.8 231 86.6
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 7.5e-93 344.7 273 72.5
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 5.4e-91 338.6 305 71.1
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 1.0e-89 334.3 334 64.7
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.0e-89 332.8 325 57.2
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.3e-88 329.3 227 84.6
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 3.2e-83 312.8 359 58.2
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 6.0e-82 308.5 248 70.2
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 6.6e-81 305.1 276 62.0
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.1e-80 304.3 276 62.0
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.5e-80 303.9 328 60.4
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.5e-80 303.9 328 60.4
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 1.4e-75 287.3 250 58.4
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 1.2e-74 284.3 250 58.4
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 2.5e-72 276.6 196 84.2
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 5.6e-72 275.4 260 70.4
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.1e-70 269.6 247 59.5
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 2.6e-69 266.5 254 69.3
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 4.4e-69 265.8 235 73.2
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 3.8e-68 262.7 247 69.2
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 2.2e-60 236.9 274 46.4
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 4.8e-55 219.2 149 74.5
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 1.8e-54 217.2 287 46.7
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.6e-50 204.1 124 80.6
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 4.6e-50 202.6 125 78.4
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 1.6e-47 194.1 149 68.5
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 3.2e-43 179.9 191 64.4
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.7e-42 176.8 165 70.3
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 6.0e-42 175.6 175 68.0
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 9.0e-38 161.8 144 62.5
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 4.3e-32 142.9 99 74.7
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 4.8e-31 139.4 262 37.0
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 6.3e-31 139.0 131 59.5
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 8.2e-31 138.7 96 71.9
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 1.4e-30 137.9 176 60.8
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 3.4e-29 133.3 108 72.2
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 2.6e-24 117.1 76 73.7
BolC4t25212H Brassica oleracea HOM05D003763 ORTHO05D004315 3.4e-21 106.7 78 74.4
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 8.8e-17 92.0 107 65.4
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 4.4e-16 89.7 83 80.7
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 5.3e-14 82.8 122 45.1
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 8.0e-10 68.9 93 45.2
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 9.1e-06 55.5 76 30.3


User provided reference genes

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