Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 0.0e+00 1092.4 546 100.0
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 8.7e-243 843.6 547 79.7
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 2.5e-242 842.0 549 80.0
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 2.1e-241 839.0 548 79.6
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 2.8e-241 838.6 549 79.6
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 3.8e-238 828.2 549 78.5
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 4.8e-217 758.1 546 71.4
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 2.0e-215 752.7 611 66.1
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 3.8e-214 748.4 542 70.5
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 6.7e-195 684.5 543 66.1
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 1.7e-193 679.9 542 65.5
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 4.5e-191 671.8 549 65.4
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 4.8e-177 625.2 533 63.0
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 4.1e-176 622.1 533 62.9
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 4.7e-172 608.6 531 62.3
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 3.5e-159 565.8 553 58.2
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 2.5e-157 559.7 574 56.8
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 3.1e-155 552.7 578 54.7
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 8.3e-153 544.7 595 53.6
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.2e-151 540.8 569 54.1
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 6.0e-151 538.5 569 55.0
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 1.8e-147 526.9 568 53.0
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 2.2e-145 520.0 567 52.2
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 6.4e-145 518.5 574 53.1
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 1.2e-135 487.6 554 51.8
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 8.4e-113 411.8 570 42.8
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.6e-108 397.5 565 42.1
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 4.8e-108 396.0 561 42.6
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 8.2e-108 395.2 567 40.9
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 8.2e-108 395.2 561 42.4
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 7.1e-104 382.1 564 41.3
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 2.7e-103 380.2 341 62.8
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 6.0e-103 379.0 569 41.1
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 1.8e-102 377.5 573 41.5
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 7.4e-101 372.1 561 41.2
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 1.6e-100 370.9 561 41.2
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 4.8e-100 369.4 564 39.7
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 1.2e-98 364.8 567 39.3
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 1.7e-97 360.9 568 39.6
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 2.5e-96 357.1 569 39.0
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 3.2e-96 356.7 571 38.7
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 1.2e-95 354.8 559 39.4
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.2e-95 354.8 561 39.8
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 7.9e-95 352.1 574 39.4
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 1.0e-94 351.7 561 38.9
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 2.3e-94 350.5 567 39.3
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 3.0e-94 350.1 560 38.2
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 8.8e-94 348.6 561 38.9
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.9e-93 347.4 569 39.5
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 1.9e-93 347.4 583 37.6
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 1.3e-92 344.7 568 38.2
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 2.2e-92 344.0 568 37.9
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 8.2e-92 342.0 583 37.2
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 8.2e-92 342.0 560 37.7
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.4e-91 341.3 568 38.7
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 3.1e-91 340.1 566 39.6
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 3.1e-91 340.1 553 40.0
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 1.5e-90 337.8 572 38.1
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.2e-89 334.0 583 36.9
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 6.5e-89 332.4 565 36.5
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.2e-88 330.1 601 35.9
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 3.2e-88 330.1 573 37.5
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 7.2e-88 328.9 557 38.8
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 9.4e-88 328.6 561 37.1
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 1.2e-87 328.2 570 37.5
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 2.7e-87 327.0 567 38.1
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 3.6e-87 326.6 565 36.6
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 6.1e-87 325.9 561 37.6
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.8e-86 324.3 561 37.6
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 2.3e-86 323.9 566 37.5
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 3.0e-86 323.6 567 37.9
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 5.1e-86 322.8 565 38.4
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 8.8e-86 322.0 567 36.9
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 1.1e-85 321.6 564 36.5
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 1.1e-85 321.6 554 38.4
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 1.5e-85 321.2 569 36.7
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 2.0e-85 320.9 548 38.1
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 7.4e-85 318.9 566 37.3
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 1.7e-84 317.8 569 37.1
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 2.2e-84 317.4 546 37.0
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 2.8e-84 317.0 563 37.7
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 1.8e-83 314.3 555 36.2
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 1.8e-83 314.3 576 37.2
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 4.1e-83 313.2 592 36.0
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 6.9e-83 312.4 546 37.2
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 4.5e-82 309.7 579 36.8
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.7e-82 308.9 573 36.0
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 1.0e-81 308.5 565 34.9
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 1.1e-80 305.1 559 34.2
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 1.2e-79 301.6 557 37.0
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 2.7e-79 300.4 574 36.4
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 1.8e-78 297.7 565 34.5
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 3.9e-78 296.6 566 35.0
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 3.9e-78 296.6 565 36.8
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 3.7e-76 290.0 493 37.5
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 3.7e-76 290.0 550 36.2
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.2e-76 288.9 622 33.6
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 1.1e-75 288.5 596 34.6
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 1.8e-75 287.7 559 35.8
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 2.4e-75 287.3 555 35.1
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 1.1e-72 278.5 566 33.6
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 8.0e-71 272.3 511 36.6
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 2.2e-68 264.2 514 33.5
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 2.2e-68 264.2 538 34.0
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 7.7e-66 255.8 572 32.9
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 2.1e-63 247.7 560 32.1
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 3.0e-62 243.8 559 31.7
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.0e-62 243.4 570 31.6
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 6.8e-62 242.7 518 32.4
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 1.5e-61 241.5 518 32.2
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 5.7e-61 239.6 378 39.2
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.9e-56 224.6 519 32.9
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.8e-55 220.7 374 37.2
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.6e-55 220.3 374 37.2
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 6.1e-55 219.5 180 63.9
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 1.5e-53 214.9 185 64.3
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 3.4e-53 213.8 565 32.6
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 1.6e-50 204.9 608 30.4
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 1.9e-48 198.0 507 32.5
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.0e-46 192.2 371 35.0
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 5.2e-46 189.9 511 30.1
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.2e-45 188.7 360 34.4
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 7.5e-45 186.0 493 30.6
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 6.4e-44 183.0 493 30.4
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 1.1e-38 165.6 283 36.0
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 7.5e-37 159.5 529 28.4
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 1.1e-30 139.0 336 31.8
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 2.1e-26 124.8 368 28.3
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 5.1e-25 120.2 566 25.8
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 1.2e-23 115.5 187 36.9
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 2.1e-23 114.8 314 28.0
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 5.2e-22 110.2 218 28.9
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 1.5e-21 108.6 136 46.3
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 4.0e-14 84.0 155 33.5
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 4.6e-10 70.5 99 40.4
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.3e-09 68.9 70 42.9
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 6.6e-09 66.6 72 55.6
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 8.1e-07 59.7 93 38.7
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 4.0e-06 57.4 32 84.4


User provided reference genes

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