Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g17650 Schrenkiella parvula HOM05D003032 ORTHO05D003456 3.2e-29 131.0 61 100.0
Thhalv10026969m.g Eutrema salsugineum HOM05D003032 ORTHO05D003456 3.9e-19 97.4 59 78.0
AT4G18940 Arabidopsis thaliana HOM05D003032 ORTHO05D003456 2.5e-18 94.7 58 75.9
BcaB04g18509 Brassica carinata HOM05D003032 ORTHO05D003456 7.4e-18 93.2 58 74.1
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 2.2e-17 91.7 58 72.4
A08p14060 Brassica napus HOM05D003032 ORTHO05D003456 2.2e-17 91.7 58 72.4
C03p81580 Brassica napus HOM05D003032 ORTHO05D003456 2.2e-17 91.7 58 72.4
BolC3t20428H Brassica oleracea HOM05D003032 ORTHO05D003456 2.2e-17 91.7 58 72.4
Carub.0007s2224 Capsella rubella HOM05D003032 ORTHO05D003456 5.9e-15 83.6 58 69.0
BraA08t33399Z Brassica rapa HOM05D003032 ORTHO05D003456 5.0e-14 80.5 59 64.4
THA.LOC104798447 Tarenaya hassleriana HOM05D003032 ORTHO05D003456 9.7e-10 66.2 40 65.0
Peaxi162Scf01055g00115 Petunia axillaris HOM05D003032 ORTHO05D003456 2.8e-09 64.7 50 58.0
MSTRG.16186 Avicennia marina HOM05D003032 ORTHO05D003456 3.7e-09 64.3 38 71.1
CARHR225820 Cardamine hirsuta HOM05D003032 ORTHO05D003456 3.7e-09 64.3 59 55.9
Ciclev10016833m.g Citrus clementina HOM05D003032 ORTHO05D003456 3.7e-09 64.3 41 65.9
CiPaw.09G133700 Carya illinoinensis HOM05D003032 ORTHO05D003456 4.8e-09 63.9 45 64.4
Peaxi162Scf00047g00922 Petunia axillaris HOM05D003032 ORTHO05D003456 6.3e-09 63.5 44 59.1
Manes.17G061800 Manihot esculenta HOM05D003032 ORTHO05D003456 1.1e-08 62.8 45 60.0
A01p10950 Brassica napus HOM05D001953 ORTHO05D003456 1.8e-08 62.0 39 64.1
BcaNung04871 Brassica carinata HOM05D003032 ORTHO05D003456 2.4e-08 61.6 39 64.1
Gohir.A06G122300 Gossypium hirsutum HOM05D003032 ORTHO05D003456 2.4e-08 61.6 38 65.8
Thecc.06G161100 Theobroma cacao HOM05D003032 ORTHO05D003456 2.4e-08 61.6 38 65.8
Aa31LG6G1600 Aethionema arabicum HOM05D003032 ORTHO05D003456 3.1e-08 61.2 40 62.5
Duzib160G0697 Durio zibethinus HOM05D003032 ORTHO05D003456 3.1e-08 61.2 38 65.8
Gohir.D06G140200 Gossypium hirsutum HOM05D003032 ORTHO05D003456 3.1e-08 61.2 38 65.8
Gorai.010G163600 Gossypium raimondii HOM05D003032 ORTHO05D003456 3.1e-08 61.2 38 65.8
Migut.M00987 Erythranthe guttata HOM05D003032 ORTHO05D003456 4.1e-08 60.8 43 58.1
Thhalv10026357m.g Eutrema salsugineum HOM05D003032 ORTHO05D003456 5.3e-08 60.5 41 58.5
CiPaw.09G133800 Carya illinoinensis HOM05D003032 ORTHO05D003456 6.9e-08 60.1 44 63.6
Dinv12722 Davidia involucrata HOM05D003032 ORTHO05D003456 6.9e-08 60.1 38 63.2
Medtr8g087820 Medicago truncatula HOM05D003032 ORTHO05D003456 9.1e-08 59.7 38 60.5
Oeu041756.1 Olea europaea HOM05D003032 ORTHO05D003456 9.1e-08 59.7 42 59.5
SalBow8G3374 Salvia bowleyana HOM05D003032 ORTHO05D003456 1.2e-07 59.3 38 63.2
Solyc02g071750.3 Solanum lycopersicum HOM05D003032 ORTHO05D003456 1.5e-07 58.9 38 63.2
SGA_v2.0_scaffold16G07719 Striga asiatica HOM05D003032 ORTHO05D003456 1.5e-07 58.9 43 58.1
AL7G35230 Arabidopsis lyrata HOM05D003032 ORTHO05D003456 2.0e-07 58.5 41 58.5
Cpa.g.c47569 Carica papaya HOM05D003032 ORTHO05D003456 2.0e-07 58.5 39 59.0
Cfa001066 Carpinus fangiana HOM05D003032 ORTHO05D003456 2.0e-07 58.5 39 64.1
Thhalv10026371m.g Eutrema salsugineum HOM05D003032 ORTHO05D003456 2.0e-07 58.5 41 56.1
MD10G1271200 Malus domestica HOM05D003032 ORTHO05D003456 2.0e-07 58.5 47 57.4
MD10G1271300 Malus domestica HOM05D003032 ORTHO05D003456 2.0e-07 58.5 47 57.4
TWI73G0283 Tripterygium wilfordii HOM05D003032 ORTHO05D003456 2.0e-07 58.5 49 53.1
Lj4g0005760 Lotus japonicus HOM05D003032 ORTHO05D003456 2.6e-07 58.2 41 56.1
Nitab4.5_0000982g0010 Nicotiana tabacum HOM05D003032 ORTHO05D003456 2.6e-07 58.2 39 59.0
Nitab4.5_0002507g0070 Nicotiana tabacum HOM05D003032 ORTHO05D003456 2.6e-07 58.2 39 59.0
Rhsim11G0122800 Rhododendron simsii HOM05D003032 ORTHO05D003456 2.6e-07 58.2 47 55.3
Sp7g17640 Schrenkiella parvula HOM05D003032 ORTHO05D003456 2.6e-07 58.2 41 56.1
AT4G18930 Arabidopsis thaliana HOM05D003032 ORTHO05D003456 3.4e-07 57.8 41 58.5
CANSAT35G0490 Cannabis sativa HOM05D003032 ORTHO05D003456 3.4e-07 57.8 38 60.5
Nitab4.5_0007204g0010 Nicotiana tabacum HOM05D003032 ORTHO05D003456 3.4e-07 57.8 38 60.5
Sopen02g020740 Solanum pennellii HOM05D003032 ORTHO05D003456 3.4e-07 57.8 38 60.5
PGSC0003DMG400028444 Solanum tuberosum HOM05D003032 ORTHO05D003456 3.4e-07 57.8 38 60.5
TWI09G1589 Tripterygium wilfordii HOM05D003032 ORTHO05D003456 3.4e-07 57.8 40 60.0
Carub.0007s2226 Capsella rubella HOM05D003032 ORTHO05D003456 4.5e-07 57.4 41 56.1
Hma1.2p1_0336F.1_g129000 Hydrangea macrophylla HOM05D003032 ORTHO05D003456 5.9e-07 57.0 38 60.5
Lsat_1_v5_gn_7_26960 Lactuca sativa HOM05D003032 ORTHO05D003456 5.9e-07 57.0 47 53.2
Oeu004267.1 Olea europaea HOM05D003032 ORTHO05D003456 5.9e-07 57.0 42 57.1
BcaC09g51459 Brassica carinata HOM05D001953 ORTHO05D003456 7.7e-07 56.6 42 54.8
C01p12970 Brassica napus HOM05D001953 ORTHO05D003456 7.7e-07 56.6 42 54.8
BolC1t01271H Brassica oleracea HOM05D001953 ORTHO05D003456 7.7e-07 56.6 42 54.8
CARHR225810 Cardamine hirsuta HOM05D003032 ORTHO05D003456 7.7e-07 56.6 41 56.1
Cfa001065 Carpinus fangiana HOM05D003032 ORTHO05D003456 7.7e-07 56.6 37 64.9
COL.COLO4_22831 Corchorus olitorius HOM05D003032 ORTHO05D003456 7.7e-07 56.6 38 60.5
Oeu040942.1 Olea europaea HOM05D003032 ORTHO05D003456 7.7e-07 56.6 42 57.1
Peaxi162Scf00022g00037 Petunia axillaris HOM05D003032 ORTHO05D003456 7.7e-07 56.6 38 57.9
GSVIVG01021300001 Vitis vinifera HOM05D003032 ORTHO05D003456 7.7e-07 56.6 42 52.4
Nitab4.5_0005138g0080 Nicotiana tabacum HOM05D003032 ORTHO05D003456 1.0e-06 56.2 38 57.9
Sed0013474 Sechium edule HOM05D003032 ORTHO05D003456 1.0e-06 56.2 38 57.9
CANSAT35G1927 Cannabis sativa HOM05D003032 ORTHO05D003456 1.3e-06 55.8 35 65.7
DCAR_027964 Daucus carota HOM05D003032 ORTHO05D003456 1.3e-06 55.8 43 62.8
RcHm_v2.0_Chr5g0012411 Rosa chinensis HOM05D003032 ORTHO05D003456 1.3e-06 55.8 38 60.5
Lj1A1178T70 Lonicera japonica HOM05D003032 ORTHO05D003456 1.7e-06 55.5 38 57.9
PSO478G0172 Papaver somniferum HOM05D003032 ORTHO05D003456 1.7e-06 55.5 40 55.0
Prupe.4G070300 Prunus persica HOM05D003032 ORTHO05D003456 1.7e-06 55.5 51 51.0
RcHm_v2.0_Chr7g0233181 Rosa chinensis HOM05D003032 ORTHO05D000039 1.7e-06 55.5 39 59.0
TPR.G6813 Trifolium pratense HOM05D003032 ORTHO05D003456 1.7e-06 55.5 38 60.5
vmacro10933 Vaccinium macrocarpon HOM05D003032 ORTHO05D003456 1.7e-06 55.5 46 54.3
Aqoxy1G01907 Aquilegia oxysepala HOM05D003032 ORTHO05D003456 2.2e-06 55.1 40 55.0
CSS0022910 Camellia sinensis var. sinensis HOM05D003032 ORTHO05D003456 2.2e-06 55.1 37 59.5
Haze_05444 Corylus avellana HOM05D003032 ORTHO05D003456 2.2e-06 55.1 37 62.2
FAN16G0417 Fragaria x ananassa HOM05D003032 ORTHO05D003456 2.2e-06 55.1 38 60.5
FAN21G3139 Fragaria x ananassa HOM05D003032 ORTHO05D003456 2.2e-06 55.1 38 60.5
FAN21G3669 Fragaria x ananassa HOM05D003032 ORTHO05D003456 2.2e-06 55.1 38 60.5
HanXRQChr04g0112231 Helianthus annuus HOM05D003032 ORTHO05D003456 2.2e-06 55.1 44 52.3
QL05p052148 Quercus lobata HOM05D003032 ORTHO05D003456 2.2e-06 55.1 42 57.1
TAR624G1316 Trochodendron aralioides HOM05D003032 ORTHO05D003456 2.2e-06 55.1 38 52.6
arahy.Tifrunner.gnm1.ann1.H1W4M4 Arachis hypogaea HOM05D003032 ORTHO05D003456 2.9e-06 54.7 35 62.9
arahy.Tifrunner.gnm1.ann1.KAT3SX Arachis hypogaea HOM05D003032 ORTHO05D003456 2.9e-06 54.7 35 62.9
Carub.0007s2225 Capsella rubella HOM05D003032 ORTHO05D003456 2.9e-06 54.7 41 53.7
Eucgr.E02848 Eucalyptus grandis HOM05D003032 ORTHO05D003456 2.9e-06 54.7 37 62.2
QL05p052162 Quercus lobata HOM05D003032 ORTHO05D003456 2.9e-06 54.7 42 57.1
RcHm_v2.0_Chr2g0123521 Rosa chinensis HOM05D003032 ORTHO05D003456 2.9e-06 54.7 40 55.0
Actinidia15401 Actinidia chinensis HOM05D003032 ORTHO05D003456 3.8e-06 54.3 37 56.8
Aqoxy1G01906 Aquilegia oxysepala HOM05D003032 ORTHO05D003456 3.8e-06 54.3 40 57.5
Prupe.6G318900 Prunus persica HOM05D003032 ORTHO05D003456 3.8e-06 54.3 47 53.2
Solyc03g005930.3 Solanum lycopersicum HOM05D003032 ORTHO05D003456 3.8e-06 54.3 41 53.7
Sopen03g001940 Solanum pennellii HOM05D003032 ORTHO05D003456 3.8e-06 54.3 41 53.7
CAN.G1537.16 Capsicum annuum HOM05D003032 ORTHO05D003456 5.0e-06 53.9 36 58.3
Eucgr.E02852 Eucalyptus grandis HOM05D003032 ORTHO05D003456 5.0e-06 53.9 37 62.2
FvH4_5g33841 Fragaria vesca HOM05D003032 ORTHO05D003456 5.0e-06 53.9 39 56.4
FAN08G1675 Fragaria x ananassa HOM05D003032 ORTHO05D000039 5.0e-06 53.9 39 56.4
Lalb_Chr07g0186181 Lupinus albus HOM05D003032 ORTHO05D003456 5.0e-06 53.9 37 54.1
FvH4_3g06750 Fragaria vesca HOM05D003032 ORTHO05D003456 6.5e-06 53.5 38 57.9
FAN11G3274 Fragaria x ananassa HOM05D003032 ORTHO05D003456 6.5e-06 53.5 38 57.9
FAN20G1368 Fragaria x ananassa HOM05D003032 ORTHO05D003456 6.5e-06 53.5 34 61.8
FAN27G2259 Fragaria x ananassa HOM05D003032 ORTHO05D003456 6.5e-06 53.5 34 61.8
MD12G1206800 Malus domestica HOM05D003032 ORTHO05D003456 6.5e-06 53.5 41 51.2
FvH4_6g06860 Fragaria vesca HOM05D003032 ORTHO05D003456 8.5e-06 53.1 39 48.7
FAN14G3229 Fragaria x ananassa HOM05D003032 ORTHO05D003456 8.5e-06 53.1 39 48.7
FAN18G4311 Fragaria x ananassa HOM05D003032 ORTHO05D003456 8.5e-06 53.1 34 61.8
FAN25G2432 Fragaria x ananassa HOM05D003032 ORTHO05D003456 8.5e-06 53.1 38 57.9
Potri.011G075600 Populus trichocarpa HOM05D003032 ORTHO05D003456 8.5e-06 53.1 39 56.4
RcHm_v2.0_Chr3g0458461 Rosa chinensis HOM05D003032 ORTHO05D003456 8.5e-06 53.1 40 52.5


User provided reference genes

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