Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g06190 Schrenkiella parvula HOM05D004178 ORTHO05D005204 1.1e-128 463.4 254 100.0
Thhalv10003566m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 3.5e-53 212.6 189 64.0
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 4.3e-51 205.7 189 62.4
BraA03t13829Z Brassica rapa HOM05D004178 ORTHO05D005204 4.3e-51 205.7 189 62.4
BcaC06g33236 Brassica carinata HOM05D004178 ORTHO05D005204 2.8e-50 203.0 189 61.4
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 2.8e-50 203.0 189 61.4
BolC7t45036H Brassica oleracea HOM05D004178 ORTHO05D005204 2.8e-50 203.0 189 61.4
Sp2g24660 Schrenkiella parvula HOM05D004178 ORTHO05D005204 2.8e-50 203.0 189 61.4
AT5G61460 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 1.0e-49 201.1 189 61.4
BcaC06g33151 Brassica carinata HOM05D004178 ORTHO05D005204 1.0e-49 201.1 189 60.8
AL8G38150 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 1.8e-49 200.3 189 60.8
Carub.0008s2215 Capsella rubella HOM05D004178 ORTHO05D005204 1.8e-49 200.3 189 61.4
CARHR275220 Cardamine hirsuta HOM05D004178 ORTHO05D005204 2.6e-48 196.4 189 60.3
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 1.9e-46 190.3 189 58.7
AL6G18000 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 1.5e-40 170.6 190 52.1
AT5G07660 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 7.5e-40 168.3 190 52.1
Carub.0006s0663 Capsella rubella HOM05D004178 ORTHO05D005204 2.2e-39 166.8 189 51.9
CiPaw.03G020700 Carya illinoinensis HOM05D004178 ORTHO05D005204 3.3e-27 126.3 189 39.2
GSVIVG01013865001 Vitis vinifera HOM05D004178 ORTHO05D005204 8.1e-26 121.7 189 37.0
Nn6g33950 Nelumbo nucifera HOM05D004178 ORTHO05D005204 6.9e-25 118.6 183 36.6
ClCG07G016820 Citrullus lanatus HOM05D004178 ORTHO05D005204 8.9e-25 118.2 189 37.0
CsaV3_4G004020 Cucumis sativus L. HOM05D004178 ORTHO05D005204 8.9e-25 118.2 189 37.0
Haze_13892 Corylus avellana HOM05D004178 ORTHO05D005204 1.2e-24 117.9 189 37.0
Cfa008151 Carpinus fangiana HOM05D004178 ORTHO05D005204 1.5e-24 117.5 189 37.0
MELO3C017663.2 Cucumis melo HOM05D004178 ORTHO05D005204 2.0e-24 117.1 189 36.5
Sed0013674 Sechium edule HOM05D004178 ORTHO05D005204 2.0e-24 117.1 189 37.6
BcaC03g13191 Brassica carinata HOM05D004178 ORTHO05D005204 2.6e-24 116.7 162 42.6
CSS0036077 Camellia sinensis var. sinensis HOM05D004178 ORTHO05D005204 3.4e-24 116.3 190 35.3
Manes.06G133600 Manihot esculenta HOM05D004178 ORTHO05D005204 3.8e-23 112.8 189 37.6
QL09p005323 Quercus lobata HOM05D004178 ORTHO05D005204 6.4e-23 112.1 189 34.9
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 1.4e-22 110.9 189 37.0
MD07G1252300 Malus domestica HOM05D004178 ORTHO05D005204 1.9e-22 110.5 189 35.4
Thhalv10012532m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 5.4e-22 109.0 189 38.6
Nitab4.5_0003647g0020 Nicotiana tabacum HOM05D004178 ORTHO05D005204 9.3e-22 108.2 189 36.0
Prupe.2G275800 Prunus persica HOM05D004178 ORTHO05D005204 9.3e-22 108.2 189 34.9
BraA02t04928Z Brassica rapa HOM05D004178 ORTHO05D005204 1.2e-21 107.8 189 37.0
Ciclev10004204m.g Citrus clementina HOM05D004178 ORTHO05D005204 1.6e-21 107.5 189 37.6
Duzib084G0917 Durio zibethinus HOM05D004178 ORTHO05D005204 1.6e-21 107.5 189 36.5
Sopen05g030150 Solanum pennellii HOM05D004178 ORTHO05D005204 3.5e-21 106.3 189 34.9
Solyc05g051680.4 Solanum lycopersicum HOM05D004178 ORTHO05D005204 6.0e-21 105.5 189 34.9
PGSC0003DMG400014287 Solanum tuberosum HOM05D004178 ORTHO05D005204 1.0e-20 104.8 189 34.9
Actinidia13583 Actinidia chinensis HOM05D004178 ORTHO05D005204 1.3e-20 104.4 189 34.9
Nitab4.5_0000818g0230 Nicotiana tabacum HOM05D004178 ORTHO05D005204 1.3e-20 104.4 189 35.4
Phvul.011G007300 Phaseolus vulgaris HOM05D004178 ORTHO05D005204 1.7e-20 104.0 189 33.3
TAR375G0252 Trochodendron aralioides HOM05D004178 ORTHO05D005204 1.7e-20 104.0 189 34.4
Peaxi162Scf00167g00610 Petunia axillaris HOM05D004178 ORTHO05D005204 3.0e-20 103.2 189 34.4
RcHm_v2.0_Chr1g0374131 Rosa chinensis HOM05D004178 ORTHO05D005204 3.0e-20 103.2 189 33.3
VMungo1127G0288 Vigna mungo HOM05D004178 ORTHO05D005204 3.0e-20 103.2 189 34.4
FAN01G0652 Fragaria x ananassa HOM05D004178 ORTHO05D005204 5.1e-20 102.4 189 32.8
FAN10G0409 Fragaria x ananassa HOM05D004178 ORTHO05D005204 8.7e-20 101.7 190 33.2
Atru.chr1.752 Acer truncatum HOM05D004178 ORTHO05D005204 1.5e-19 100.9 189 34.9
FAN06G2180 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.9e-19 100.5 190 31.6
BcaNung06187 Brassica carinata HOM05D004178 ORTHO05D005204 2.5e-19 100.1 189 34.9
C02p03240 Brassica napus HOM05D004178 ORTHO05D005204 2.5e-19 100.1 189 34.9
FAN06G0596 Fragaria x ananassa HOM05D004178 ORTHO05D005204 3.3e-19 99.8 190 31.6
PSO063G1916 Papaver somniferum HOM05D004178 ORTHO05D005204 4.3e-19 99.4 190 32.6
CDE11G0310 Ceratophyllum demersum HOM05D004178 ORTHO05D005204 7.3e-19 98.6 189 32.3
MSTRG.8830 Avicennia marina HOM05D004178 ORTHO05D005204 9.6e-19 98.2 189 33.3
Thecc.03G153700 Theobroma cacao HOM05D004178 ORTHO05D005204 9.6e-19 98.2 189 34.4
BcaB05g21602 Brassica carinata HOM05D004178 ORTHO05D005204 1.3e-18 97.8 189 34.4
TWI14G1279 Tripterygium wilfordii HOM05D004178 ORTHO05D005204 1.3e-18 97.8 189 33.9
Sabra03G0074500 Salix brachista HOM05D004178 ORTHO05D005204 2.8e-18 96.7 206 33.5
Glyma.09G229900 Glycine max HOM05D004178 ORTHO05D005204 3.6e-18 96.3 189 30.7
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 3.6e-18 96.3 189 32.8
FAN03G3201 Fragaria x ananassa HOM05D004178 ORTHO05D005204 4.8e-18 95.9 189 30.7
Medtr4g036760 Medicago truncatula HOM05D004178 ORTHO05D005204 4.8e-18 95.9 189 33.9
Migut.F00486 Erythranthe guttata HOM05D004178 ORTHO05D005204 6.2e-18 95.5 189 33.3
FvH4_7g27291 Fragaria vesca HOM05D004178 ORTHO05D005204 6.2e-18 95.5 189 30.7
CANSAT56G2947 Cannabis sativa HOM05D004178 ORTHO05D005204 1.1e-17 94.7 189 33.3
Psat7g194520 Pisum sativum HOM05D004178 ORTHO05D005204 1.4e-17 94.4 189 32.8
COL.COLO4_14102 Corchorus olitorius HOM05D004178 ORTHO05D005204 5.3e-17 92.4 189 33.3
vmacro06815 Vaccinium macrocarpon HOM05D004178 ORTHO05D005204 5.8e-16 89.0 189 31.2
TPR.G2991 Trifolium pratense HOM05D004178 ORTHO05D005204 1.3e-15 87.8 189 31.7
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 4.9e-15 85.9 189 31.2
Cc02_g04400 Coffea canephora HOM05D004178 ORTHO05D005204 8.4e-15 85.1 189 28.6
Aqoxy5G03870 Aquilegia oxysepala HOM05D004178 ORTHO05D005204 2.4e-14 83.6 157 36.9
Lalb_Chr19g0140351 Lupinus albus HOM05D004178 ORTHO05D005204 2.4e-14 83.6 189 29.6
Lj3g0020737 Lotus japonicus HOM05D004178 ORTHO05D005204 7.1e-14 82.0 189 29.6
ATR0317G120 Amborella trichopoda HOM05D004178 ORTHO05D005204 9.3e-14 81.6 188 29.3
arahy.Tifrunner.gnm1.ann1.2YP1UN Arachis hypogaea HOM05D004178 ORTHO05D005204 9.3e-14 81.6 159 34.0
arahy.Tifrunner.gnm1.ann1.D3FWW6 Arachis hypogaea HOM05D004178 ORTHO05D005204 4.6e-13 79.3 159 33.3
SalBow5G4122 Salvia bowleyana HOM05D004178 ORTHO05D005204 4.6e-13 79.3 189 29.6
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 3.0e-12 76.6 189 28.6
Rhsim03G0166000 Rhododendron simsii HOM05D004178 ORTHO05D005204 3.9e-12 76.3 191 28.8
DCAR_014619 Daucus carota HOM05D004178 ORTHO05D005204 5.1e-12 75.9 189 30.2
Cpa.g.sc1936.1 Carica papaya HOM05D004178 ORTHO05D005204 6.7e-12 75.5 189 29.1
Gohir.A12G197800 Gossypium hirsutum HOM05D004178 ORTHO05D005204 5.6e-11 72.4 189 28.6
HPP92_027283 Vanilla planifolia HOM05D004178 ORTHO05D005204 9.6e-11 71.6 189 26.5
EL10Ac3g05856 Beta vulgaris HOM05D004178 ORTHO05D005204 2.1e-10 70.5 190 26.3
Zm00001eb309160 Zea mays HOM05D004178 ORTHO05D005204 2.1e-10 70.5 189 27.5
Gohir.D12G200300 Gossypium hirsutum HOM05D004178 ORTHO05D005204 2.8e-10 70.1 189 28.0
Gorai.008G215500 Gossypium raimondii HOM05D004178 ORTHO05D005204 2.8e-10 70.1 189 28.0
Sc19g0002080 Simmondsia chinensis HOM05D004178 ORTHO05D005204 2.8e-10 70.1 112 34.8
Eucgr.A02900 Eucalyptus grandis HOM05D004178 ORTHO05D005204 8.1e-10 68.6 133 34.6
SHI13977 Sapria himalayana HOM05D004178 ORTHO05D005204 1.1e-09 68.2 163 32.5
AUR62002220 Chenopodium quinoa HOM05D004178 ORTHO05D005204 1.8e-09 67.4 189 28.0
Os09g0121050 Oryza sativa ssp. japonica HOM05D004178 ORTHO05D005204 9.0e-09 65.1 112 33.0
AUR62015432 Chenopodium quinoa HOM05D004178 ORTHO05D005204 1.2e-08 64.7 190 26.8
TPR.G3678 Trifolium pratense HOM05D004178 ORTHO05D005204 3.4e-08 63.2 137 32.1
Ca_30729_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 2.2e-07 60.5 104 38.5
Potri.003G107700 Populus trichocarpa HOM05D004178 ORTHO05D005204 2.9e-07 60.1 189 29.1
CAN.G515.9 Capsicum annuum HOM05D004178 ORTHO05D005204 3.8e-07 59.7 191 28.8


User provided reference genes

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