Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g05970 Schrenkiella parvula HOM05D004976 ORTHO05D004851 5.0e-218 760.8 373 100.0
C09p39900 Brassica napus HOM05D000003 ORTHO05D000004 2.9e-24 117.1 286 28.3
BcaB02g10660 Brassica carinata HOM05D000003 ORTHO05D000004 2.7e-22 110.5 288 27.1
BcaC01g02706 Brassica carinata HOM05D000003 ORTHO05D000004 3.7e-19 100.1 284 26.4
BcaB01g00937 Brassica carinata HOM05D000003 ORTHO05D000004 2.0e-17 94.4 283 25.1
BcaNung01203 Brassica carinata HOM05D000003 ORTHO05D000004 2.0e-17 94.4 291 26.1
BcaNung01080 Brassica carinata HOM05D000003 ORTHO05D001498 2.7e-17 94.0 384 23.2
BcaB01g02280 Brassica carinata HOM05D000003 ORTHO05D001498 1.0e-16 92.0 378 24.3
BcaB05g22432 Brassica carinata HOM05D000003 ORTHO05D000004 1.3e-16 91.7 393 23.4
BcaB07g32767 Brassica carinata HOM05D000003 ORTHO05D001498 2.9e-16 90.5 379 23.2
Thhalv10015769m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 2.9e-16 90.5 99 46.5
BcaC01g03112 Brassica carinata HOM05D000003 ORTHO05D004851 1.9e-15 87.8 283 24.7
Aa31sc883G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.6e-14 83.6 214 30.8
CARHR217450 Cardamine hirsuta HOM05D004976 ORTHO05D004851 3.6e-14 83.6 86 45.3
BcaC06g30852 Brassica carinata HOM05D000003 ORTHO05D015466 1.8e-13 81.3 394 23.6
Rhsim06G0102000 Rhododendron simsii HOM05D000003 ORTHO05D000006 5.2e-13 79.7 283 24.0
BcaB02g10097 Brassica carinata HOM05D000003 ORTHO05D001498 6.8e-13 79.3 386 23.6
Aa31LG1G6140 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.8e-13 79.0 221 25.3
C02p57240 Brassica napus HOM05D000003 ORTHO05D004851 8.8e-13 79.0 121 34.7
BolC9t56103H Brassica oleracea HOM05D004976 ORTHO05D004851 1.5e-12 78.2 122 34.4
AT5G65005 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 2.0e-12 77.8 133 36.1
BcaC09g51704 Brassica carinata HOM05D000496 ORTHO05D000411 2.6e-12 77.4 93 38.7
BolC1t01989H Brassica oleracea HOM05D004976 ORTHO05D004851 2.6e-12 77.4 122 34.4
BcaC02g10886 Brassica carinata HOM05D000496 ORTHO05D000411 4.4e-12 76.6 93 38.7
BcaC07g37790 Brassica carinata HOM05D000496 ORTHO05D000411 5.7e-12 76.3 93 38.7
C09p45640 Brassica napus HOM05D004976 ORTHO05D004851 1.3e-11 75.1 122 33.6
BcaC05g28073 Brassica carinata HOM05D000003 ORTHO05D000411 1.7e-11 74.7 222 27.9
Carub.0002s0756 Capsella rubella HOM05D000003 ORTHO05D000006 2.2e-11 74.3 226 25.7
BcaC02g12210 Brassica carinata HOM05D000003 ORTHO05D000925 2.8e-11 73.9 430 23.0
Aa31LG3G18440 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.7e-11 73.6 125 32.8
AT2G34320 Arabidopsis thaliana HOM05D000003 ORTHO05D001091 4.8e-11 73.2 100 36.0
AT3G25270 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 4.8e-11 73.2 122 37.7
AT4G29090 Arabidopsis thaliana HOM05D000003 ORTHO05D000004 4.8e-11 73.2 102 34.3
BcaC02g10031 Brassica carinata HOM05D000003 ORTHO05D000006 1.1e-10 72.0 88 39.8
Sp4g06100 Schrenkiella parvula HOM05D004976 ORTHO05D004851 1.1e-10 72.0 197 27.4
Aa31LG1G4960 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.4e-10 69.7 112 35.7
Carub.0005s0877 Capsella rubella HOM05D000003 ORTHO05D000006 5.4e-10 69.7 199 27.1
Thhalv10028305m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 5.4e-10 69.7 64 46.9
BcaB02g10370 Brassica carinata HOM05D000003 ORTHO05D000411 7.0e-10 69.3 288 23.3
Sp7g06900 Schrenkiella parvula HOM05D004976 ORTHO05D004851 9.1e-10 68.9 121 32.2
Aa31csc275G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.2e-09 68.6 236 25.0
QL05p051227 Quercus lobata HOM05D000003 ORTHO05D000004 1.2e-09 68.6 182 25.8
QL05p068740 Quercus lobata HOM05D000003 ORTHO05D000004 1.2e-09 68.6 218 24.3
QL05p069113 Quercus lobata HOM05D000003 ORTHO05D000004 1.2e-09 68.6 218 24.3
Aa31LG11G6920 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.0e-09 67.8 234 24.4
BcaC09g49394 Brassica carinata HOM05D000003 ORTHO05D000411 2.0e-09 67.8 196 25.5
Aa31LG8G10880 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.7e-09 67.4 236 27.5
Aa31sc214G50 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.7e-09 67.4 322 23.0
BcaB04g18725 Brassica carinata HOM05D000003 ORTHO05D000006 3.5e-09 67.0 125 28.8
BcaC08g45326 Brassica carinata HOM05D010131 ORTHO05D011793 3.5e-09 67.0 188 27.1
Aa31sc52G80 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.5e-09 66.6 235 23.0
Aa31LG11G9550 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.7e-09 65.9 243 24.3
Aa31LG9G3130 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.7e-09 65.9 214 26.2
BcaC05g28305 Brassica carinata HOM05D000003 ORTHO05D001091 1.0e-08 65.5 91 33.0
BcaC07g38152 Brassica carinata HOM05D000003 ORTHO05D000004 1.0e-08 65.5 101 38.6
BolC8t50384H Brassica oleracea HOM05D000003 ORTHO05D001091 1.0e-08 65.5 95 33.7
AT2G02650 Arabidopsis thaliana HOM05D000003 ORTHO05D000004 1.7e-08 64.7 125 29.6
BraA07t28107Z Brassica rapa HOM05D000003 ORTHO05D001498 2.3e-08 64.3 91 35.2
Sp4g04330 Schrenkiella parvula HOM05D000003 ORTHO05D004851 2.3e-08 64.3 85 41.2
Aa31LG6G3790 Aethionema arabicum HOM05D000003 ORTHO05D000006 2.9e-08 63.9 125 26.4
Aa31sc231G40 Aethionema arabicum HOM05D000003 ORTHO05D000006 2.9e-08 63.9 226 22.1
Aa31sc174G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.8e-08 63.5 127 30.7
BcaB03g16045 Brassica carinata HOM05D000003 ORTHO05D001498 3.8e-08 63.5 195 27.7
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 3.8e-08 63.5 251 24.7
AL1G41300 Arabidopsis lyrata HOM05D004976 ORTHO05D004851 5.0e-08 63.2 55 47.3
BcaC04g19171 Brassica carinata HOM05D000003 ORTHO05D000006 5.0e-08 63.2 88 35.2
BolC5t29612H Brassica oleracea HOM05D000003 ORTHO05D000006 6.6e-08 62.8 196 24.5
BraA01t02705Z Brassica rapa HOM05D011471 ORTHO05D014744 6.6e-08 62.8 101 30.7
Aa31sc132G10 Aethionema arabicum HOM05D000003 ORTHO05D000006 8.6e-08 62.4 225 22.7
Aa31sc85G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.6e-08 62.4 94 36.2
RhsimUnG0053200 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.1e-07 62.0 207 23.2
Aa31LG10G10270 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.5e-07 61.6 111 26.1
Aa31sc414G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.5e-07 61.6 226 24.8
AT2G04420 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 1.5e-07 61.6 98 32.7
AT3G09510 Arabidopsis thaliana HOM05D000003 ORTHO05D000004 1.5e-07 61.6 111 27.9
BcaB01g04400 Brassica carinata HOM05D000003 ORTHO05D000411 1.5e-07 61.6 301 23.3
BcaC05g26162 Brassica carinata HOM05D000003 ORTHO05D000006 1.5e-07 61.6 121 29.8
Sp1g25350 Schrenkiella parvula HOM05D000003 ORTHO05D004851 1.9e-07 61.2 127 26.0
Aa31LG6G15220 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.5e-07 60.8 234 22.2
Aa31sc734G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.5e-07 60.8 234 25.6
BcaB01g03263 Brassica carinata HOM05D000496 ORTHO05D000411 2.5e-07 60.8 89 37.1
BcaB05g21463 Brassica carinata HOM05D000003 ORTHO05D000006 2.5e-07 60.8 87 32.2
Sp1g38880 Schrenkiella parvula HOM05D000003 ORTHO05D004851 2.5e-07 60.8 103 30.1
Sp2g04360 Schrenkiella parvula HOM05D004976 ORTHO05D004851 2.5e-07 60.8 111 29.7
BcaC05g28671 Brassica carinata HOM05D000003 ORTHO05D004851 3.3e-07 60.5 119 30.3
BcaC06g35337 Brassica carinata HOM05D000003 ORTHO05D000006 3.3e-07 60.5 213 25.8
SpUn0001_0110 Schrenkiella parvula HOM05D000003 ORTHO05D004851 3.3e-07 60.5 202 24.3
Atru.chr13.1676 Acer truncatum HOM05D000003 ORTHO05D000006 4.2e-07 60.1 239 24.7
AT2G33160 Arabidopsis thaliana HOM05D000037 ORTHO05D000150 4.2e-07 60.1 89 37.1
AT3G23320 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 4.2e-07 60.1 66 43.9
BraA02t07552Z Brassica rapa HOM05D000003 ORTHO05D011507 4.2e-07 60.1 90 33.3
Aa31LG9G9420 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.5e-07 59.7 112 27.7
BcaB05g22054 Brassica carinata HOM05D000003 ORTHO05D001498 5.5e-07 59.7 88 30.7
BcaB06g25892 Brassica carinata HOM05D000003 ORTHO05D001498 5.5e-07 59.7 92 34.8
BcaB05g24840 Brassica carinata HOM05D000003 ORTHO05D001498 7.2e-07 59.3 127 29.9
BcaC07g39607 Brassica carinata HOM05D000003 ORTHO05D001498 7.2e-07 59.3 225 26.2
BolC2t08499H Brassica oleracea HOM05D004976 ORTHO05D004851 7.2e-07 59.3 94 38.3
Aa31LG7G3330 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.2e-06 58.5 236 21.6
BcaC06g36411 Brassica carinata HOM05D000496 ORTHO05D000411 1.2e-06 58.5 87 35.6
Rhsim06G0043400 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.2e-06 58.5 250 22.0
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 1.2e-06 58.5 238 24.4
Aa31LG10G16810 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-06 58.2 117 32.5
Aa31LG8G11510 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-06 58.2 236 23.3
Aa31LG9G1250 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-06 58.2 119 24.4
BolC4t22740H Brassica oleracea HOM05D000003 ORTHO05D001498 1.6e-06 58.2 104 30.8
Atru.chr10.299 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-06 57.8 190 24.2
Aa31LG10G9450 Aethionema arabicum HOM05D000003 ORTHO05D001091 2.1e-06 57.8 131 29.8
BcaB04g18843 Brassica carinata HOM05D000003 ORTHO05D001498 2.1e-06 57.8 88 27.3
BcaC09g49165 Brassica carinata HOM05D000032 ORTHO05D000925 2.1e-06 57.8 100 32.0
BraA01t01837Z Brassica rapa HOM05D014076 ORTHO05D021903 2.1e-06 57.8 71 40.8
FvH4_5g27366 Fragaria vesca HOM05D000003 ORTHO05D000004 2.1e-06 57.8 217 23.5
Aa31LG9G4050 Aethionema arabicum HOM05D000003 ORTHO05D009772 2.8e-06 57.4 404 22.5
Aa31LG5G21260 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.6e-06 57.0 126 30.2
BcaC04g21327 Brassica carinata HOM05D000496 ORTHO05D000411 3.6e-06 57.0 88 28.4
Thhalv10003001m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 3.6e-06 57.0 76 40.8
Aa31LG4G10800 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.7e-06 56.6 94 29.8
Aa31LG9G6690 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.7e-06 56.6 94 29.8
Aa31sc56G70 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.7e-06 56.6 235 22.1
AT1G27870 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 4.7e-06 56.6 79 39.2
BcaB01g06093 Brassica carinata HOM05D000003 ORTHO05D001498 4.7e-06 56.6 225 25.8
BolC3t16774H Brassica oleracea HOM05D000003 ORTHO05D001498 4.7e-06 56.6 95 28.4
BolC4t23478H Brassica oleracea HOM05D000003 ORTHO05D000006 4.7e-06 56.6 89 33.7
BolC6t38194H Brassica oleracea HOM05D000003 ORTHO05D000006 4.7e-06 56.6 117 25.6
CARHR285950 Cardamine hirsuta HOM05D000003 ORTHO05D001498 4.7e-06 56.6 106 28.3
Aa31LG11G5340 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.1e-06 56.2 89 31.5
BcaB01g02832 Brassica carinata HOM05D000496 ORTHO05D000411 6.1e-06 56.2 88 34.1
BcaC01g05513 Brassica carinata HOM05D000003 ORTHO05D001498 6.1e-06 56.2 112 25.9
CiPaw.02G051300 Carya illinoinensis HOM05D000003 ORTHO05D000004 6.1e-06 56.2 203 23.6
Manes.01G203601 Manihot esculenta HOM05D000003 ORTHO05D000006 6.1e-06 56.2 133 25.6
Aa31LG1G4180 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.0e-06 55.8 88 30.7
Aa31LG7G12310 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.0e-06 55.8 104 30.8
BcaC09g49873 Brassica carinata HOM05D000003 ORTHO05D000004 8.0e-06 55.8 111 28.8
BolC7t41786H Brassica oleracea HOM05D000003 ORTHO05D011507 8.0e-06 55.8 88 34.1
Rhsim08G0131400 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.0e-06 55.8 238 20.6


User provided reference genes

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