Gene: AT2G33160

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G33160
  • Transcript Identifier AT2G33160.1
  • Gene Type Coding gene
  • Location Chr2 : 14053404-14056246 : positive

Gene Family Information

  • ID HOM05D000037
  • #Genes/#Species 5045/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G33160.1
  • Alias NMA,NIMNA (Sanskrit for 'sunken or low)
  • uniprot O49319

Descriptions

  • Description glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein
  • Computational description glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity, nucleic acid binding; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G43080.1); Has 4055 Blast hits to 4034 proteins in 453 species: Archae - 8; Bacteria - 853; Metazoa - 14; Fungi - 1250; Plants - 1822; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0005975
IEA
Gene Ontologycarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0008152
IEA
GOA Databasemetabolic process
GO:0080159
IMP
Gene Ontologyzygote elongation1
GO:0010098
IMP
Gene Ontologysuspensor development1
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004650
IEA
Gene Ontologypolygalacturonase activity
GO:0004650
IEA
InterPropolygalacturonase activity
GO:0004523
IEA
Gene OntologyRNA-DNA hybrid ribonuclease activity
GO:0004523
IEA
InterProRNA-DNA hybrid ribonuclease activity
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005618
IEA
GOA Databasecell wall
GO:0005618
IDA
Gene Ontologycell wall1
GO:0005576
ISM
Gene Ontologyextracellular region

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002156 Ribonuclease H domain
IPR036397 Ribonuclease H superfamily
IPR006626 Parallel beta-helix repeat
IPR012337 Ribonuclease H-like superfamily
IPR000743 Glycoside hydrolase, family 28
IPR011050 Pectin lyase fold/virulence factor
IPR044730 Ribonuclease H-like domain, plant type
IPR012334 Pectin lyase fold
Mapman id Description
21.3.5.3 Cell wall organisation.pectin.modification and degradation.pectin lyase