Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 0.0e+00 2159.0 1083 100.0
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 0.0e+00 1652.9 1161 75.5
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 0.0e+00 1638.6 1156 75.2
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 0.0e+00 1638.2 1085 78.4
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 0.0e+00 1613.2 1105 77.1
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 0.0e+00 1611.7 1101 77.4
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 0.0e+00 1610.9 1163 73.7
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 0.0e+00 1596.6 1161 73.8
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 0.0e+00 1583.9 1161 73.0
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 0.0e+00 1575.5 1121 75.0
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 0.0e+00 1569.3 1115 74.8
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 0.0e+00 1567.0 1073 76.8
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 0.0e+00 1517.3 1161 70.8
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 0.0e+00 1492.6 1156 70.2
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 0.0e+00 1462.6 1217 66.9
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 0.0e+00 1454.9 1104 71.5
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 0.0e+00 1448.0 1171 67.3
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 0.0e+00 1439.1 1019 75.2
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 0.0e+00 1421.0 1173 65.8
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 0.0e+00 1415.2 1157 67.9
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 0.0e+00 1391.7 1135 68.2
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 0.0e+00 1384.4 1135 67.7
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 0.0e+00 1231.1 1180 58.2
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 0.0e+00 1203.0 1151 58.9
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 0.0e+00 1148.3 682 83.7
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 2.6e-299 1032.3 1135 52.0
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 3.5e-296 1021.9 1131 50.8
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 3.6e-293 1011.9 1137 50.8
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 4.8e-285 984.9 1155 48.6
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 5.8e-283 978.0 1134 49.3
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 2.7e-280 969.1 1172 48.5
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 3.1e-276 955.7 1138 48.0
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 5.9e-275 951.4 1133 48.1
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 1.7e-274 949.9 1124 48.8
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 5.7e-270 934.9 1119 47.1
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 1.3e-269 933.7 1133 47.4
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 6.3e-269 931.4 1198 45.1
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.2e-266 922.9 1145 46.4
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 8.5e-266 921.0 1168 46.7
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 2.5e-265 919.5 1127 46.8
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 1.8e-260 903.3 1213 44.3
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 6.5e-258 894.8 1127 46.6
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 1.1e-257 894.0 1119 45.3
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.1e-257 894.0 1008 50.0
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.4e-257 893.6 1008 50.2
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 3.2e-257 892.5 1139 45.7
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 3.6e-256 889.0 1090 46.8
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 5.2e-255 885.2 1144 44.8
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 4.1e-252 875.5 1044 47.0
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 2.1e-248 863.2 1246 42.1
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 8.0e-248 861.3 1133 44.7
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 2.3e-247 859.8 1142 43.9
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 1.2e-246 857.4 1124 44.9
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 1.2e-246 857.4 1232 42.4
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 6.3e-245 851.7 1144 44.0
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 6.3e-245 851.7 1149 44.1
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 7.0e-244 848.2 1230 42.8
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 1.0e-242 844.3 1155 43.1
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 6.5e-242 841.6 1122 45.5
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 8.5e-242 841.3 1245 41.2
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 8.5e-242 841.3 1100 45.4
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 9.4e-241 837.8 1087 45.7
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 6.1e-240 835.1 1149 43.9
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 2.3e-239 833.2 1250 40.2
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.2e-238 830.9 1142 43.8
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 1.7e-237 827.0 1135 42.6
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 2.2e-237 826.6 1134 43.7
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 3.7e-237 825.9 1067 44.7
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 3.7e-237 825.9 1058 45.5
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 4.1e-236 822.4 1136 44.2
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 5.4e-236 822.0 1152 43.1
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 5.9e-235 818.5 1035 46.1
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 8.5e-234 814.7 1160 44.0
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.2e-232 810.8 1286 39.0
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 1.2e-232 810.8 971 47.7
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 2.1e-232 810.1 1169 43.5
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 6.8e-231 805.1 1251 41.6
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 7.0e-228 795.0 1116 43.0
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 9.2e-228 794.7 1074 45.0
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 2.3e-226 790.0 1070 44.4
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 6.6e-226 788.5 1107 42.7
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 3.6e-224 782.7 1162 42.1
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 4.1e-220 769.2 1254 41.1
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 4.3e-217 759.2 1151 40.7
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 1.2e-216 757.7 912 46.6
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 2.8e-216 756.5 648 57.4
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 4.4e-214 749.2 1046 42.1
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 5.8e-214 748.8 1159 40.7
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 9.8e-214 748.0 1068 41.9
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 3.3e-209 733.0 1227 38.8
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 8.3e-205 718.4 1061 42.4
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 7.1e-196 688.7 1124 38.3
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 9.6e-193 678.3 1045 40.3
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 3.6e-192 676.4 1153 39.4
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 3.6e-192 676.4 1153 39.4
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 1.5e-190 671.0 841 45.9
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 3.2e-188 663.3 634 54.9
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 1.7e-186 657.5 1065 38.5
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 3.0e-186 656.8 984 41.8
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 5.6e-185 652.5 899 42.8
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 9.3e-180 635.2 996 39.5
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 7.1e-172 609.0 643 50.2
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 6.5e-165 585.9 842 41.9
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 5.9e-158 562.8 939 38.9
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 2.2e-157 560.8 652 48.2
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 4.6e-155 553.1 1044 36.2
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 6.7e-146 522.7 814 41.0
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 7.7e-142 509.2 771 42.9
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 8.2e-136 489.2 676 45.1
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.2e-134 485.3 512 51.0
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.2e-129 468.8 437 53.1
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.4e-127 461.1 767 37.2
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 6.8e-114 416.4 1089 30.6
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 3.9e-93 347.4 1046 30.1
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 3.6e-91 340.9 645 35.2
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 7.5e-89 333.2 754 33.6
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 7.3e-84 316.6 342 48.8
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.1e-83 315.1 737 33.1
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 1.4e-82 312.4 1051 28.6
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 2.4e-82 311.6 1008 28.9
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 4.0e-82 310.8 312 51.9
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 2.4e-79 301.6 305 52.5
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.3e-69 268.5 287 48.4
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 3.1e-66 258.1 276 47.8
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 4.5e-65 254.2 433 36.3
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 5.5e-55 220.7 351 37.6
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 7.4e-44 183.7 458 35.4
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 1.3e-27 129.8 274 32.1
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 3.7e-27 128.3 809 22.5
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 1.0e-24 120.2 295 29.8
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 3.8e-24 118.2 592 25.7
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 2.7e-22 112.1 270 28.5
BcaB06g27242 Brassica carinata HOM05D005064 ORTHO05D006611 2.7e-14 85.5 54 74.1
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 4.8e-11 74.7 276 30.4
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 8.5e-08 63.9 127 35.4
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 1.1e-07 63.5 141 35.5
Sabra06G0080700 Salix brachista HOM05D005064 ORTHO05D006611 4.7e-06 58.2 35 80.0
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 6.1e-06 57.8 59 52.5


User provided reference genes

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