Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 0.0e+00 1444.1 722 100.0
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 0.0e+00 1223.8 692 88.9
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 0.0e+00 1219.5 694 87.9
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 0.0e+00 1219.1 692 88.4
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 0.0e+00 1215.3 692 88.0
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 0.0e+00 1194.1 706 86.5
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 0.0e+00 1193.3 704 86.9
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 0.0e+00 1189.5 698 85.5
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 0.0e+00 1186.8 747 82.3
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 0.0e+00 1167.5 691 86.3
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 0.0e+00 1159.1 691 85.8
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 0.0e+00 1157.1 691 85.7
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 0.0e+00 1140.9 682 83.7
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 0.0e+00 1125.2 694 83.1
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 0.0e+00 1097.4 668 82.3
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 5.9e-311 1070.5 685 80.0
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.2e-308 1062.8 685 78.7
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 1.0e-307 1059.7 698 77.4
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 3.0e-307 1058.1 698 77.1
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 6.4e-302 1040.4 684 77.6
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 3.0e-299 1031.6 714 74.4
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 8.9e-296 1020.0 703 74.7
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 5.8e-279 964.1 679 71.7
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 3.2e-269 931.8 680 69.7
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 6.5e-254 880.9 619 74.2
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 3.8e-238 828.6 684 61.3
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 5.5e-237 824.7 688 60.9
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 2.6e-234 815.8 674 60.5
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 1.7e-233 813.1 716 59.1
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 2.8e-233 812.4 687 60.1
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 4.5e-231 805.1 692 59.8
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 1.1e-229 800.4 707 59.5
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 1.6e-228 796.6 702 57.1
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 1.6e-228 796.6 698 58.3
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 2.7e-228 795.8 686 59.3
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 4.7e-228 795.0 675 59.1
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 1.0e-227 793.9 717 57.9
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 6.7e-227 791.2 649 60.9
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.2e-226 790.4 717 57.7
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 2.6e-226 789.3 684 58.6
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 3.3e-226 788.9 721 57.1
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.7e-225 786.6 717 57.9
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 1.1e-224 783.9 672 59.1
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 1.8e-224 783.1 686 57.0
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 1.8e-224 783.1 688 58.1
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 5.3e-224 781.6 689 58.2
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 3.5e-223 778.9 702 56.7
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 5.0e-222 775.0 706 56.5
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 8.5e-222 774.2 680 57.8
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 5.5e-221 771.5 710 56.6
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 1.8e-219 766.5 685 57.1
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 4.0e-219 765.4 678 58.6
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 9.8e-218 760.8 685 56.1
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.2e-217 759.6 685 56.4
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 1.4e-216 756.9 706 54.7
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 1.0e-214 750.7 688 55.8
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 2.1e-212 743.0 730 53.6
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 4.7e-212 741.9 688 56.1
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 4.7e-212 741.9 680 57.2
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 1.8e-211 740.0 697 56.1
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 6.8e-211 738.0 721 53.0
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 7.5e-210 734.6 705 55.0
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 2.2e-209 733.0 676 56.1
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 4.1e-208 728.8 714 54.5
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 5.4e-208 728.4 684 56.1
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 1.2e-207 727.2 660 55.9
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 4.5e-207 725.3 718 54.5
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 5.9e-207 724.9 684 54.4
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 7.8e-207 724.5 702 54.4
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 6.1e-204 714.9 686 54.1
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 4.0e-203 712.2 683 53.9
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 8.9e-203 711.1 686 55.1
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 1.2e-202 710.7 701 52.9
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.2e-202 710.7 720 52.4
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 1.1e-200 704.1 665 54.6
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 1.1e-200 704.1 645 57.2
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 4.6e-199 698.7 686 52.8
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 5.6e-197 691.8 711 52.0
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 7.3e-197 691.4 695 54.8
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 1.6e-196 690.3 683 52.3
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 2.1e-196 689.9 682 53.1
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 8.0e-196 688.0 698 55.0
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 1.8e-195 686.8 687 53.4
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 2.6e-194 682.9 641 56.9
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 4.4e-194 682.2 682 52.1
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 5.8e-194 681.8 668 53.6
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 7.0e-192 674.9 700 51.0
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 7.3e-189 664.8 685 52.3
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 6.2e-188 661.8 658 52.1
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 2.5e-181 639.8 713 49.2
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 3.3e-181 639.4 673 49.9
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 5.6e-181 638.6 683 49.8
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 5.8e-178 628.6 712 47.3
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 1.7e-177 627.1 643 51.3
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 4.9e-169 599.0 677 49.2
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 1.2e-167 594.3 698 47.1
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 1.9e-165 587.0 527 57.3
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 4.3e-165 585.9 700 46.0
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 2.1e-164 583.6 683 47.3
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 2.1e-164 583.6 683 47.3
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 9.0e-163 578.2 611 49.1
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 3.4e-162 576.2 648 49.8
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 7.6e-162 575.1 632 49.8
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 1.5e-157 560.8 659 46.9
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 4.0e-155 552.7 684 44.4
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.9e-141 507.3 512 54.1
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.9e-136 490.7 437 56.1
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 3.1e-123 446.8 676 39.6
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 1.0e-118 431.8 473 48.8
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 6.8e-110 402.5 691 36.8
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 4.5e-106 389.8 359 57.7
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 2.2e-100 370.9 346 54.9
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 2.4e-99 367.5 649 36.2
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.6e-98 364.8 345 54.2
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 6.6e-89 332.8 338 52.4
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 2.3e-86 324.3 313 53.7
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 4.1e-83 313.5 334 50.0
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 2.7e-82 310.8 305 53.8
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.7e-74 284.3 288 51.0
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 1.6e-71 275.0 285 49.8
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 1.6e-71 275.0 472 38.6
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 1.1e-62 245.7 433 34.4
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 1.1e-62 245.7 668 30.7
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 5.2e-62 243.4 682 30.4
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.8e-60 237.3 355 38.6
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.8e-54 218.4 415 35.7
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 1.0e-28 132.9 525 25.3
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 3.2e-27 127.9 252 33.7
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 7.4e-24 116.7 299 30.1
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 1.3e-23 115.9 270 31.9
BcaB06g27242 Brassica carinata HOM05D005064 ORTHO05D006611 1.8e-09 68.9 67 56.7
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 3.3e-08 64.7 157 32.5
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 4.8e-07 60.8 136 36.8
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 8.2e-07 60.1 64 45.3


User provided reference genes

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