Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 0.0e+00 1568.5 811 100.0
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 0.0e+00 1447.2 813 89.9
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 0.0e+00 1439.9 813 89.3
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 0.0e+00 1438.7 811 88.4
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 0.0e+00 1436.0 839 87.1
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 0.0e+00 1425.6 812 90.3
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 0.0e+00 1424.5 811 88.0
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 0.0e+00 1421.0 811 87.7
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 0.0e+00 1406.7 811 87.3
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 0.0e+00 1352.8 810 86.4
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 0.0e+00 1226.1 778 82.0
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 0.0e+00 1195.3 811 75.8
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 0.0e+00 1175.6 811 72.3
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 0.0e+00 1110.9 625 89.9
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 1.2e-301 1039.6 812 64.7
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 1.7e-298 1029.2 816 63.6
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 3.7e-298 1028.1 813 64.0
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 4.1e-297 1024.6 816 63.5
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 3.4e-296 1021.5 814 62.8
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 1.0e-295 1020.0 809 62.8
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 1.3e-295 1019.6 816 63.4
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 8.5e-295 1016.9 817 62.4
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 1.2e-293 1013.1 812 63.2
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 3.3e-291 1005.0 811 61.8
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 1.6e-288 996.1 808 61.9
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 5.0e-287 991.1 810 62.2
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 5.5e-286 987.6 812 61.8
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 9.4e-286 986.9 811 61.7
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 1.4e-284 983.0 833 59.2
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.4e-281 972.2 822 60.1
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 9.1e-281 970.3 811 60.9
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 9.1e-281 970.3 811 60.0
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.9e-279 965.3 810 60.9
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.5e-278 962.2 810 60.5
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 2.5e-278 962.2 810 61.1
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 1.4e-276 956.4 810 60.5
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 2.3e-276 955.7 549 89.4
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 1.2e-275 953.4 819 60.0
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 5.7e-275 951.0 811 60.9
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 3.7e-274 948.3 815 58.8
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 8.3e-274 947.2 810 60.0
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 7.7e-272 940.6 804 60.0
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 1.5e-270 936.4 816 58.9
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 2.1e-269 932.6 804 58.7
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 2.8e-269 932.2 812 59.1
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 8.9e-268 927.2 801 59.8
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 1.2e-267 926.8 804 58.5
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 2.6e-267 925.6 813 58.1
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 2.2e-266 922.5 814 58.2
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 1.8e-265 919.5 877 56.9
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 2.7e-264 915.6 802 58.7
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 1.3e-263 913.3 824 58.1
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 2.9e-263 912.1 835 56.6
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 5.0e-263 911.4 815 57.5
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 3.3e-262 908.7 823 57.6
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.1e-261 906.0 812 58.4
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 2.8e-261 905.6 794 58.2
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 1.0e-260 903.7 809 58.7
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 1.4e-260 903.3 806 58.1
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 3.0e-260 902.1 824 56.2
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 6.8e-260 901.0 833 57.1
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 8.9e-260 900.6 819 57.3
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 2.6e-259 899.0 798 58.5
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 4.4e-259 898.3 803 58.2
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 9.8e-259 897.1 796 58.3
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 9.8e-259 897.1 818 56.6
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 2.2e-258 896.0 734 61.4
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 8.3e-258 894.0 819 58.1
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 2.4e-257 892.5 797 56.6
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 7.0e-257 891.0 814 56.3
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 1.2e-256 890.2 832 54.9
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 6.0e-256 887.9 814 56.8
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 5.0e-255 884.8 809 56.5
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 1.6e-253 879.8 817 56.5
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 2.8e-253 879.0 832 54.6
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 4.7e-253 878.2 818 55.9
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 8.0e-253 877.5 787 56.4
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 5.8e-251 871.3 818 55.5
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.3e-247 860.1 775 55.7
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 2.5e-246 855.9 839 55.8
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.3e-246 855.5 811 56.7
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 3.6e-245 852.0 822 54.3
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 1.2e-243 847.0 822 55.1
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 1.1e-238 830.5 812 53.4
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 1.3e-234 817.0 824 54.0
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 2.9e-226 789.3 750 54.0
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.9e-222 776.5 860 51.0
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 2.5e-222 776.2 615 64.1
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 1.3e-221 773.9 875 48.3
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 3.9e-215 752.3 822 50.5
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 4.3e-214 748.8 622 61.6
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 4.3e-214 748.8 622 61.6
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 9.6e-206 721.1 622 60.0
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 8.2e-205 718.0 621 60.1
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 6.7e-199 698.4 594 60.4
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 1.9e-185 653.7 718 48.6
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 7.4e-182 641.7 768 46.1
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 6.3e-173 612.1 818 41.7
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 6.3e-173 612.1 729 46.0
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 3.7e-165 586.3 815 43.1
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 1.5e-145 521.2 402 65.2
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 8.3e-141 505.4 457 54.9
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 3.3e-137 493.4 553 46.8
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.7e-133 479.9 498 53.2
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 1.8e-127 461.1 330 64.8
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 4.9e-125 453.0 398 60.6
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 1.4e-119 434.9 830 34.7
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.3e-114 417.5 343 60.9
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.1e-113 415.2 342 60.8
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 2.4e-111 407.5 783 36.0
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.1e-106 389.8 398 53.0
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 5.6e-97 359.8 750 33.3
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 7.1e-84 316.2 486 40.9
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 4.6e-83 313.5 277 58.8
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 8.7e-82 309.3 459 40.5
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 2.1e-75 288.1 241 59.3
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 2.5e-73 281.2 899 28.4
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 6.3e-72 276.6 296 51.7
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.7e-67 261.2 344 44.2
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.7e-67 261.2 183 64.5
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 5.3e-63 246.9 380 42.1
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 5.5e-60 236.9 308 44.5
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.7e-56 224.2 188 58.5
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 5.0e-53 213.8 230 47.4
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.0e-53 213.8 144 66.7
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 4.4e-41 174.1 159 54.7
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 3.1e-39 167.9 181 50.3
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.7e-37 162.2 214 41.6
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 2.9e-37 161.4 231 43.7
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 4.2e-36 157.5 169 50.3
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 5.2e-34 150.6 169 48.5
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.4e-33 147.9 147 51.0
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 4.9e-32 144.1 215 39.1
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 2.9e-24 118.2 146 46.6
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 3.7e-24 117.9 84 73.8
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 1.3e-21 109.4 72 77.8
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 1.2e-19 102.8 763 21.8
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 2.0e-17 95.5 105 46.7
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 3.4e-09 68.2 325 22.5
C09p19940 Brassica napus HOM05D001640 ORTHO05D006644 2.1e-06 58.9 37 83.8


User provided reference genes

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