Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 0.0e+00 2083.9 1057 100.0
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 0.0e+00 1748.4 1101 82.2
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 0.0e+00 1687.2 1097 79.3
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 0.0e+00 1686.4 1100 80.8
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 0.0e+00 1684.8 1103 78.8
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 0.0e+00 1652.5 1080 79.7
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 0.0e+00 1593.2 1103 76.3
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 0.0e+00 1591.6 1103 76.6
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 0.0e+00 1583.2 1103 76.1
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 0.0e+00 1557.7 1094 73.8
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 0.0e+00 1495.7 1103 73.2
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 0.0e+00 1388.2 1119 66.3
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 0.0e+00 1285.0 847 76.2
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 2.2e-306 1055.8 1122 52.0
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 2.0e-296 1022.7 1117 50.8
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 1.6e-293 1013.1 1114 50.4
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 2.1e-293 1012.7 1108 52.3
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 7.9e-293 1010.7 1111 52.1
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 1.7e-290 1003.0 1109 50.6
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 4.7e-269 931.8 1113 48.7
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 1.2e-267 927.2 1106 47.0
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 2.8e-266 922.5 1127 48.3
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 7.7e-264 914.4 1117 47.6
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 1.3e-263 913.7 1114 48.0
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 6.6e-263 911.4 1101 48.4
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 4.7e-261 905.2 1123 47.1
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 5.7e-259 898.3 1097 46.8
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 1.7e-258 896.7 1098 46.4
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 3.7e-258 895.6 1126 46.5
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 2.0e-256 889.8 1118 46.2
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 2.7e-256 889.4 1059 48.3
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 5.9e-256 888.3 1132 47.2
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 7.8e-256 887.9 1129 47.1
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 2.9e-255 885.9 1142 44.8
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 6.6e-255 884.8 1068 50.3
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 7.3e-254 881.3 1089 47.9
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 1.6e-253 880.2 1108 46.1
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 1.6e-253 880.2 1087 46.9
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 5.2e-252 875.2 1159 44.5
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 4.4e-251 872.1 1090 44.9
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 1.1e-249 867.5 998 49.2
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 2.4e-249 866.3 1081 46.8
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 3.2e-249 865.9 1120 44.1
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 1.2e-248 864.0 1100 45.3
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 3.3e-246 855.9 1155 44.1
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 7.3e-246 854.7 1113 44.4
CARHR205750 Cardamine hirsuta HOM05D007034 ORTHO05D008665 2.1e-245 853.2 521 86.4
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 1.1e-244 850.9 1079 46.0
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 2.3e-244 849.7 1091 45.3
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 5.8e-243 845.1 1124 43.1
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 1.3e-242 844.0 1112 44.6
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 3.5e-240 835.9 1082 45.3
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 7.8e-240 834.7 1096 44.6
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 3.0e-239 832.8 1102 44.6
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 3.9e-239 832.4 1092 45.2
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 2.9e-234 816.2 1101 44.2
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 1.6e-232 810.4 1104 43.3
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 3.0e-231 806.2 1117 41.8
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 3.3e-230 802.7 993 46.5
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 1.2e-229 800.8 1083 43.7
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 4.4e-227 792.3 705 57.2
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 1.7e-226 790.4 1071 44.0
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 2.2e-226 790.0 1140 43.2
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 2.2e-226 790.0 1137 41.3
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 4.9e-226 788.9 1118 41.9
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 9.6e-222 774.6 710 59.7
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 2.8e-221 773.1 1119 42.0
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 1.1e-220 771.2 1040 42.1
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 9.9e-219 764.6 709 55.0
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 4.6e-216 755.7 870 48.3
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 7.8e-216 755.0 1099 40.7
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 2.3e-215 753.4 704 55.0
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 3.9e-215 752.7 703 55.0
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 1.9e-214 750.4 703 58.0
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 5.6e-214 748.8 697 58.8
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 6.4e-210 735.3 1112 41.3
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 9.3e-201 704.9 702 52.7
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 2.3e-199 700.3 954 42.8
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 3.0e-199 699.9 707 50.8
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 6.7e-199 698.7 703 50.6
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 6.3e-189 665.6 750 50.1
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.3e-183 647.1 1048 42.2
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 8.8e-183 645.2 917 42.7
MBI11_g13136_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 3.1e-180 636.7 704 50.1
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 1.7e-165 587.8 613 51.4
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 2.3e-143 514.2 690 41.6
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 1.5e-142 511.5 675 42.7
COL.COLO4_37288 Corchorus olitorius HOM05D007034 ORTHO05D008665 4.7e-136 490.0 711 43.6
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 1.7e-117 428.3 884 32.6
MD09G1063600 Malus domestica HOM05D007034 ORTHO05D008665 3.5e-107 394.0 544 45.6
Cpa.g.sc13.204 Carica papaya HOM05D007034 ORTHO05D008665 1.1e-103 382.5 366 56.8
Cpa.g.sc13.203 Carica papaya HOM05D007034 ORTHO05D008665 2.5e-89 334.7 665 34.9
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 9.0e-87 326.2 1085 29.4
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 3.7e-56 224.6 493 32.0
COL.COLO4_37289 Corchorus olitorius HOM05D000001 ORTHO05D000003 2.9e-37 161.8 192 49.5
MBI11_g40919_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 8.5e-37 160.2 185 49.7
SEGI_36690 Sequoiadendron giganteum HOM05D007034 ORTHO05D008665 1.2e-35 156.4 129 56.6
Cpa.g.c43582 Carica papaya HOM05D007034 ORTHO05D008665 6.1e-35 154.1 134 59.7
QL10p035719 Quercus lobata HOM05D007034 ORTHO05D008665 1.8e-34 152.5 167 50.3
Peaxi162Scf00314g00824 Petunia axillaris HOM05D007034 ORTHO05D008665 2.8e-32 145.2 93 66.7
CSS0039283 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.5e-28 132.9 166 48.2
TAR622G0913 Trochodendron aralioides HOM05D007034 ORTHO05D008665 1.2e-25 123.2 258 33.3
CSS0021292 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.5e-25 122.9 166 45.2
Glyma.17G184700 Glycine max HOM05D007034 ORTHO05D006448 8.3e-24 117.1 75 58.7
CSS0014219 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 2.3e-21 109.0 68 67.6
HanXRQChr10g0301151 Helianthus annuus HOM05D007034 ORTHO05D008665 3.9e-21 108.2 68 64.7
TAR622G0405 Trochodendron aralioides HOM05D001184 ORTHO05D007940 8.9e-18 97.1 396 25.0
Actinidia25500 Actinidia chinensis HOM05D007034 ORTHO05D008665 5.8e-17 94.4 72 63.9
Atru.chr6.1955 Acer truncatum HOM05D007034 ORTHO05D008665 3.9e-13 81.6 149 32.2
CSS0045322 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.5e-12 79.7 69 59.4
Zm00001eb094900 Zea mays HOM05D000085 ORTHO05D014542 3.3e-12 78.6 70 55.7
CSS0025577 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 4.3e-12 78.2 69 58.0
Lsat_1_v5_gn_2_45281 Lactuca sativa HOM05D007034 ORTHO05D008665 1.2e-09 70.1 57 57.9
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 2.0e-09 69.3 422 23.9
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 2.6e-09 68.9 193 28.5
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 9.8e-09 67.0 421 24.0
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 1.7e-08 66.2 216 27.8
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 1.7e-08 66.2 193 25.4
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 1.7e-08 66.2 318 25.8
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 2.2e-08 65.9 421 23.8
EL10Ac8g19892 Beta vulgaris HOM05D006350 ORTHO05D007850 6.4e-08 64.3 218 24.8
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 8.3e-08 63.9 258 25.2
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 8.3e-08 63.9 318 24.8
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 1.1e-07 63.5 194 25.3
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 1.4e-07 63.2 310 22.3
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 1.9e-07 62.8 309 23.0
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 1.9e-07 62.8 310 23.9
Hund21371 Selenicereus undatus HOM05D006350 ORTHO05D007850 1.9e-07 62.8 165 29.7
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 1.9e-07 62.8 309 23.9
Duzib160G0024 Durio zibethinus HOM05D006350 ORTHO05D007850 2.4e-07 62.4 161 26.7
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 2.4e-07 62.4 317 24.6
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 2.4e-07 62.4 197 24.4
Hund21368 Selenicereus undatus HOM05D006350 ORTHO05D007850 2.4e-07 62.4 165 29.7
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 2.4e-07 62.4 222 24.8
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 2.4e-07 62.4 256 25.4
AUR62012643 Chenopodium quinoa HOM05D006350 ORTHO05D007850 3.2e-07 62.0 145 31.7
MBI11_g13135_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 4.1e-07 61.6 155 30.3
C03p08000 Brassica napus HOM05D006350 ORTHO05D007850 5.4e-07 61.2 197 27.9
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 5.4e-07 61.2 257 26.1
Dinv17832 Davidia involucrata HOM05D006350 ORTHO05D007850 5.4e-07 61.2 194 23.7
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 5.4e-07 61.2 319 24.5
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 5.4e-07 61.2 223 25.1
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 5.4e-07 61.2 257 26.5
Medtr7g050860 Medicago truncatula HOM05D006350 ORTHO05D007850 5.4e-07 61.2 318 24.5
CiPaw.09G087000 Carya illinoinensis HOM05D006350 ORTHO05D007850 7.1e-07 60.8 253 25.3
Aa31LG11G14390 Aethionema arabicum HOM05D006350 ORTHO05D007850 9.2e-07 60.5 194 25.3
Lj1g0012123 Lotus japonicus HOM05D006350 ORTHO05D007850 9.2e-07 60.5 319 25.4
Potri.004G022500 Populus trichocarpa HOM05D006350 ORTHO05D007850 9.2e-07 60.5 251 26.7
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 9.2e-07 60.5 318 23.9
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 9.2e-07 60.5 254 24.8
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 1.2e-06 60.1 222 24.8
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 1.2e-06 60.1 318 23.3
BolC3t13297H Brassica oleracea HOM05D006350 ORTHO05D007850 1.6e-06 59.7 197 27.4
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 2.1e-06 59.3 192 22.4
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 2.1e-06 59.3 192 22.4
Cc02_g11700 Coffea canephora HOM05D006350 ORTHO05D007850 2.1e-06 59.3 258 26.7
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 2.1e-06 59.3 224 24.1
Atru.chr10.2148 Acer truncatum HOM05D006350 ORTHO05D007850 2.7e-06 58.9 314 22.9
Nitab4.5_0002613g0020 Nicotiana tabacum HOM05D006350 ORTHO05D007850 3.5e-06 58.5 175 28.0
PSO675G5568 Papaver somniferum HOM05D006350 ORTHO05D007850 3.5e-06 58.5 318 23.9
CARHR217940 Cardamine hirsuta HOM05D007034 ORTHO05D008665 4.6e-06 58.2 41 73.2
PGSC0003DMG400024073 Solanum tuberosum HOM05D006350 ORTHO05D007850 4.6e-06 58.2 333 23.1
Haze_08403 Corylus avellana HOM05D006350 ORTHO05D007850 6.0e-06 57.8 253 24.9
MELO3C007370.2 Cucumis melo HOM05D006350 ORTHO05D007850 6.0e-06 57.8 318 23.6
CsaV3_6G049260 Cucumis sativus L. HOM05D006350 ORTHO05D007850 6.0e-06 57.8 318 23.3
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 6.0e-06 57.8 222 24.3
Nitab4.5_0000091g0460 Nicotiana tabacum HOM05D006350 ORTHO05D007850 6.0e-06 57.8 175 28.6
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 6.0e-06 57.8 310 22.9
THA.LOC104821036 Tarenaya hassleriana HOM05D006350 ORTHO05D007850 6.0e-06 57.8 193 23.3
ATR0109G008 Amborella trichopoda HOM05D006350 ORTHO05D007850 7.8e-06 57.4 225 23.1
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 7.8e-06 57.4 254 23.6
Manes.17G035000 Manihot esculenta HOM05D006350 ORTHO05D007850 7.8e-06 57.4 253 23.7
PGR004G2689 Punica granatum HOM05D006350 ORTHO05D007850 7.8e-06 57.4 252 24.6
QL05p075148 Quercus lobata HOM05D006350 ORTHO05D007850 7.8e-06 57.4 193 23.3


User provided reference genes

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