Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 2.7e-214 748.4 383 100.0
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 2.1e-203 712.2 383 95.0
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 2.8e-203 711.8 383 95.0
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 2.8e-203 711.8 383 95.0
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 1.4e-202 709.5 383 94.8
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 9.8e-201 703.4 383 93.7
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 1.3e-200 703.0 383 94.3
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 1.4e-199 699.5 383 93.5
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 1.9e-199 699.1 384 94.0
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 3.2e-199 698.4 383 92.7
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 4.1e-199 698.0 383 91.9
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 4.6e-198 694.5 384 93.5
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 2.3e-197 692.2 383 93.0
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 8.6e-197 690.3 384 92.4
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 8.0e-195 683.7 383 91.6
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 5.2e-194 681.0 384 92.2
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 5.2e-194 681.0 384 92.2
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 2.0e-193 679.1 383 91.1
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 2.0e-193 679.1 383 91.1
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 3.4e-193 678.3 386 91.7
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 3.3e-188 661.8 383 89.6
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 1.7e-181 639.4 384 87.5
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 7.3e-180 634.0 381 84.8
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 5.6e-164 581.3 375 80.0
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 5.4e-159 564.7 386 78.2
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 1.0e-157 560.5 384 77.6
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 1.8e-157 559.7 373 78.3
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 8.7e-157 557.4 354 80.2
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 3.3e-156 555.4 384 76.8
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 5.6e-156 554.7 386 75.9
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 9.6e-156 553.9 357 81.2
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 8.1e-155 550.8 357 79.3
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 8.1e-155 550.8 380 76.3
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 1.1e-154 550.4 383 76.0
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 1.8e-154 549.7 364 78.3
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.4e-154 549.3 357 78.7
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 3.1e-154 548.9 395 74.7
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 3.1e-154 548.9 360 78.1
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.0e-154 548.5 378 75.9
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 4.0e-154 548.5 378 75.9
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 5.3e-154 548.1 369 78.0
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 9.0e-154 547.4 380 75.8
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 5.8e-153 544.7 359 76.6
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 1.7e-152 543.1 360 77.8
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.2e-152 542.7 363 77.7
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 2.2e-152 542.7 363 76.9
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 4.9e-152 541.6 374 75.4
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 4.9e-152 541.6 369 77.2
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 6.5e-152 541.2 354 79.1
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.1e-151 540.4 386 73.3
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 3.2e-151 538.9 342 80.7
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 3.2e-151 538.9 324 83.0
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 4.2e-151 538.5 348 81.0
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 4.2e-151 538.5 338 80.5
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 5.5e-151 538.1 355 78.9
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 5.5e-151 538.1 327 83.2
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 7.1e-151 537.7 358 77.7
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 9.3e-151 537.3 356 78.9
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.2e-150 537.0 363 77.4
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 1.2e-150 537.0 338 80.8
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 1.6e-150 536.6 365 76.7
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 2.7e-150 535.8 380 74.2
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 3.5e-150 535.4 367 76.3
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 4.6e-150 535.0 380 74.5
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 6.0e-150 534.6 366 76.0
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 6.0e-150 534.6 339 80.2
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 7.9e-150 534.3 374 73.8
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.0e-149 533.9 380 72.9
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 1.0e-149 533.9 355 78.0
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 1.8e-149 533.1 358 77.4
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.8e-149 533.1 379 74.4
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 2.3e-149 532.7 362 76.2
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 2.3e-149 532.7 366 76.0
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 3.0e-149 532.3 324 82.4
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 3.9e-149 531.9 363 75.8
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 5.1e-149 531.6 324 82.4
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 6.7e-149 531.2 382 73.6
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 6.7e-149 531.2 348 79.6
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 6.7e-149 531.2 386 74.6
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 8.7e-149 530.8 367 75.2
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 8.7e-149 530.8 367 74.9
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 8.7e-149 530.8 367 74.9
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 8.7e-149 530.8 363 75.5
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 1.5e-148 530.0 378 74.3
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 2.5e-148 529.3 363 75.5
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 7.4e-148 527.7 371 74.1
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 7.4e-148 527.7 371 74.1
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 9.6e-148 527.3 355 75.8
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 9.6e-148 527.3 344 77.6
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.6e-147 526.6 355 77.5
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.6e-147 526.6 379 74.4
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 2.8e-147 525.8 335 79.4
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 3.7e-147 525.4 385 71.4
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 4.8e-147 525.0 369 74.0
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 8.2e-147 524.2 363 74.9
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.4e-146 523.5 365 74.2
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.1e-146 521.9 373 74.3
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 9.0e-146 520.8 352 77.3
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.5e-145 520.0 364 74.5
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.5e-145 520.0 364 74.5
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 1.5e-145 520.0 365 74.2
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 3.4e-145 518.8 343 78.1
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 3.4e-145 518.8 401 69.3
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.3e-144 516.9 358 74.6
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.7e-144 516.5 373 73.7
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 1.7e-144 516.5 353 74.8
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 2.2e-144 516.2 350 76.0
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 2.9e-144 515.8 376 73.1
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 6.5e-144 514.6 361 74.0
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 2.5e-143 512.7 355 75.8
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.2e-143 511.9 301 84.4
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 7.2e-143 511.1 349 76.8
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 1.6e-142 510.0 447 64.0
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 4.6e-142 508.4 332 77.4
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 1.3e-141 506.9 363 74.4
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 1.8e-141 506.5 317 81.4
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 2.3e-141 506.1 323 79.9
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 3.0e-141 505.8 370 73.5
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 3.3e-140 502.3 432 64.8
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.3e-140 501.9 393 68.2
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 7.4e-140 501.1 357 73.1
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 7.4e-140 501.1 376 71.0
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 7.4e-140 501.1 362 72.7
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 9.7e-140 500.7 358 72.9
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.6e-139 500.0 364 72.0
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 2.2e-139 499.6 362 72.7
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 3.7e-139 498.8 369 71.0
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 5.3e-138 495.0 347 75.5
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 5.3e-138 495.0 383 70.5
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.6e-137 492.7 321 78.5
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 2.6e-137 492.7 334 74.9
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 7.7e-137 491.1 437 62.0
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 1.4e-135 486.9 362 70.7
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.5e-135 486.1 286 85.7
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 2.1e-134 483.0 342 73.4
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 6.1e-134 481.5 286 83.6
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 1.8e-133 479.9 342 72.2
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 5.3e-130 468.4 340 70.6
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 9.1e-130 467.6 287 82.6
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.2e-129 467.2 328 72.0
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 2.0e-129 466.5 340 70.0
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 4.5e-129 465.3 299 77.9
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.9e-128 462.6 328 72.0
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 3.8e-128 462.2 319 75.2
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 5.5e-127 458.4 299 76.3
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 1.6e-126 456.8 341 69.2
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 5.3e-122 441.8 309 75.1
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 1.0e-112 411.0 311 67.8
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 1.4e-106 390.6 322 63.4
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 1.3e-104 384.0 246 79.7
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 3.6e-102 375.9 260 76.5
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 6.1e-102 375.2 268 76.5
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 3.6e-94 349.4 290 63.1
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 9.8e-92 341.3 247 73.7
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 9.8e-76 288.1 311 55.0
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 2.8e-70 270.0 308 51.3
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 8.9e-69 265.0 205 71.2
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 2.2e-67 260.4 228 68.4
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 5.4e-66 255.8 200 70.0
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 3.1e-61 240.0 167 72.5
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 3.1e-61 240.0 228 64.9
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 3.1e-61 240.0 228 64.9
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 1.2e-49 201.4 112 83.9
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 8.4e-43 178.7 113 79.6
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 2.3e-40 170.6 104 82.7
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 1.9e-39 167.5 102 84.3
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 1.9e-39 167.5 102 84.3
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 1.3e-38 164.9 102 83.3
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 8.1e-38 162.2 106 79.2
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 4.0e-37 159.8 98 82.7
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 2.6e-36 157.1 107 74.8
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 3.8e-35 153.3 106 74.5
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 4.3e-31 139.8 284 34.2
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 3.7e-22 110.2 64 84.4
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 1.0e-16 92.0 67 74.6
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.8e-16 91.3 49 91.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 1.8e-13 81.3 61 72.1
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 1.0e-11 75.5 38 92.1
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 1.1e-10 72.0 38 89.5


User provided reference genes

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