Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 0.0e+00 1419.8 730 100.0
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 0.0e+00 1295.4 730 91.0
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 0.0e+00 1263.1 732 88.4
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 0.0e+00 1252.7 732 87.7
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 0.0e+00 1247.6 732 87.2
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 0.0e+00 1220.3 734 86.2
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 0.0e+00 1197.2 735 83.9
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 0.0e+00 1190.6 731 83.7
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 0.0e+00 1186.0 731 83.6
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 0.0e+00 1185.2 732 83.6
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 0.0e+00 1181.8 732 83.5
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 0.0e+00 1168.3 733 82.7
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 0.0e+00 1167.5 731 83.0
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 1.4e-288 996.1 739 71.6
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 7.0e-232 807.7 728 59.1
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 1.6e-231 806.6 734 57.9
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 5.6e-229 798.1 722 59.8
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 7.3e-229 797.7 722 59.7
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 1.8e-227 793.1 722 59.3
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 3.1e-227 792.3 650 62.8
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 9.2e-224 780.8 709 58.0
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 7.8e-223 777.7 709 57.7
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 2.3e-222 776.2 761 55.5
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 1.8e-219 766.5 750 55.2
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 1.5e-218 763.5 656 60.2
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 4.4e-218 761.9 654 60.6
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 7.6e-218 761.1 728 54.9
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 1.7e-217 760.0 745 55.4
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 8.4e-217 757.7 709 57.1
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 9.2e-216 754.2 649 59.5
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 2.1e-212 743.0 699 55.2
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 1.8e-211 740.0 663 59.0
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 1.8e-211 740.0 689 56.2
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 9.0e-211 737.6 734 53.5
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 1.4e-208 730.3 739 53.0
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 9.3e-208 727.6 740 53.1
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 4.6e-207 725.3 705 55.0
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 1.0e-206 724.2 667 57.6
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 3.0e-206 722.6 711 54.6
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 6.6e-206 721.5 660 58.0
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 4.3e-205 718.8 696 53.0
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 7.3e-205 718.0 718 53.2
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 1.4e-203 713.8 731 53.9
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 5.3e-203 711.8 756 53.7
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 1.3e-201 707.2 824 48.4
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 6.4e-201 704.9 696 55.2
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 1.4e-200 703.7 732 53.6
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 9.3e-200 701.0 696 53.9
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 3.5e-199 699.1 735 51.6
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 4.6e-199 698.7 700 50.9
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 6.0e-199 698.4 677 54.7
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 7.9e-199 698.0 711 52.3
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 2.5e-197 693.0 707 52.8
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 3.1e-195 686.0 615 57.6
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 5.3e-195 685.3 604 58.3
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 2.0e-194 683.3 622 55.5
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 4.5e-194 682.2 732 51.1
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 5.8e-194 681.8 707 52.1
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 3.8e-193 679.1 716 51.3
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 4.9e-193 678.7 699 52.4
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.4e-192 677.2 707 52.1
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 4.6e-191 672.2 717 51.7
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 7.9e-191 671.4 721 50.6
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 2.3e-190 669.8 664 53.6
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 5.1e-190 668.7 711 51.9
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 1.5e-189 667.2 696 51.1
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 2.5e-189 666.4 690 51.2
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 3.3e-189 666.0 633 54.3
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 7.4e-189 664.8 730 51.9
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 6.2e-188 661.8 661 52.0
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 8.2e-188 661.4 661 51.9
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 1.1e-187 661.0 719 49.9
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 1.4e-187 660.6 711 51.6
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 6.9e-187 658.3 715 50.9
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 2.0e-186 656.8 698 52.0
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 2.6e-186 656.4 653 52.2
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 4.5e-186 655.6 721 51.0
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 7.6e-186 654.8 712 50.7
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 1.0e-185 654.4 656 54.1
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 3.8e-185 652.5 696 50.1
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 5.1e-182 642.1 698 51.1
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 5.1e-182 642.1 709 49.8
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 1.5e-181 640.6 697 50.5
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 1.3e-180 637.5 672 51.5
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 2.8e-180 636.3 1025 38.9
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 6.9e-179 631.7 648 50.9
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 7.6e-178 628.2 686 49.9
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 3.6e-175 619.4 605 54.0
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 6.1e-175 618.6 718 47.4
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 3.1e-171 606.3 702 48.6
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 1.2e-170 604.4 724 47.5
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 4.4e-165 585.9 577 52.2
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 2.2e-164 583.6 638 49.5
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 2.2e-161 573.5 663 46.6
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 3.8e-153 546.2 573 49.7
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 7.5e-149 531.9 698 45.3
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 5.9e-146 522.3 709 42.6
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 2.2e-140 503.8 472 54.0
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 6.1e-127 459.1 665 43.0
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 5.8e-109 399.4 737 37.0
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 4.1e-107 393.3 324 62.0
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 8.4e-100 369.0 300 63.7
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 3.2e-99 367.1 613 36.7
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 7.1e-99 365.9 613 36.2
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 3.9e-97 360.1 395 49.9
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 3.6e-95 353.6 580 36.9
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 1.7e-84 318.2 256 63.3
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 6.0e-82 309.7 574 33.4
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 1.4e-75 288.5 633 34.0
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 3.1e-70 270.8 325 45.2
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.3e-68 265.4 686 31.3
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.7e-55 221.9 184 58.7
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 2.5e-51 208.0 592 28.0
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 1.5e-45 188.7 633 25.3
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 6.5e-36 156.8 729 23.6
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 6.1e-34 150.2 656 26.4
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 3.5e-29 134.4 211 41.7
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 1.1e-27 129.4 92 76.1
PRCOL_00005763 Prasinoderma coloniale HOM05D005942 ORTHO05D007209 9.4e-27 126.3 453 25.6
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 5.2e-25 120.6 213 38.5
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 1.2e-24 119.4 75 82.7
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 3.1e-22 111.3 149 44.3
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 2.7e-21 108.2 162 38.3
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.0e-17 96.3 124 46.8
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 7.0e-14 83.6 121 41.3
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 5.0e-12 77.4 104 37.5
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.2e-08 66.2 72 44.4
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 1.5e-08 65.9 68 50.0
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 2.2e-07 62.0 155 31.6
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 6.4e-07 60.5 49 53.1


User provided reference genes

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