Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 2.7e-265 918.3 535 100.0
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 2.3e-195 686.0 539 82.0
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 5.4e-173 611.7 555 70.6
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 1.2e-172 610.5 537 72.8
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 6.0e-172 608.2 537 72.6
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 9.6e-170 600.9 550 71.8
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 8.1e-169 597.8 543 72.7
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 4.0e-168 595.5 553 68.5
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 2.0e-167 593.2 542 73.4
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 2.6e-167 592.8 544 73.2
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 1.1e-160 570.9 557 66.6
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 3.2e-157 559.3 547 68.2
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 2.9e-126 456.4 562 56.8
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 2.7e-103 380.2 549 47.5
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 2.4e-59 234.2 536 36.4
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 6.9e-59 232.6 529 36.5
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 2.0e-58 231.1 536 37.3
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 1.3e-57 228.4 465 40.6
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 2.9e-57 227.3 528 36.7
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 3.2e-56 223.8 541 37.2
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 5.4e-56 223.0 527 37.0
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 9.3e-56 222.2 420 40.2
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 2.7e-55 220.7 530 37.0
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 4.6e-55 219.9 264 47.7
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 3.0e-54 217.2 414 37.4
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 5.1e-54 216.5 416 37.5
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 1.5e-53 214.9 414 36.0
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 1.9e-53 214.5 535 35.3
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 2.5e-53 214.2 418 37.8
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 4.3e-53 213.4 308 44.8
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 5.6e-53 213.0 499 36.9
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 5.6e-53 213.0 418 38.8
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 9.6e-53 212.2 470 37.2
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 9.6e-53 212.2 544 34.4
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 1.3e-52 211.8 518 35.7
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 2.8e-52 210.7 441 36.3
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 6.2e-52 209.5 420 36.7
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 1.8e-51 208.0 489 32.9
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 2.4e-51 207.6 488 38.9
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 3.1e-51 207.2 211 50.7
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 6.9e-51 206.1 171 57.3
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 6.9e-51 206.1 171 57.3
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 1.2e-50 205.3 502 32.1
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 3.4e-50 203.8 426 34.0
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 7.6e-50 202.6 423 39.7
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 9.9e-50 202.2 316 46.8
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 1.3e-49 201.8 417 35.7
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 1.7e-49 201.4 571 34.7
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 2.2e-49 201.1 490 32.2
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 2.9e-49 200.7 486 32.5
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 3.8e-49 200.3 310 40.0
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 6.4e-49 199.5 428 34.3
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 2.4e-48 197.6 420 35.5
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 4.2e-48 196.8 437 34.6
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 5.4e-48 196.4 228 49.6
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 7.1e-48 196.1 406 36.7
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 9.3e-48 195.7 212 51.4
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 2.1e-47 194.5 434 34.1
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 3.5e-47 193.7 531 36.3
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 3.5e-47 193.7 517 34.0
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 4.6e-47 193.4 422 35.8
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 4.6e-47 193.4 420 33.3
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 4.6e-47 193.4 403 35.0
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 6.0e-47 193.0 291 42.6
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 1.8e-46 191.4 581 35.3
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 3.0e-46 190.7 211 52.1
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 3.0e-46 190.7 576 36.3
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 1.1e-45 188.7 435 34.3
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 1.5e-45 188.3 567 34.6
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 2.5e-45 187.6 522 33.5
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 4.3e-45 186.8 410 32.9
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 7.4e-45 186.0 284 45.4
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 7.4e-45 186.0 248 42.7
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 9.6e-45 185.7 419 35.8
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 9.6e-45 185.7 556 34.5
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 1.6e-44 184.9 162 56.2
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 2.8e-44 184.1 424 35.4
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 6.2e-44 183.0 413 33.2
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 8.1e-44 182.6 471 34.2
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 1.1e-43 182.2 403 35.7
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 1.8e-43 181.4 201 46.3
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 2.4e-43 181.0 416 33.2
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 3.1e-43 180.6 164 54.9
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 2.0e-42 177.9 485 33.4
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 2.6e-42 177.6 415 34.2
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 5.8e-42 176.4 278 40.6
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 9.9e-42 175.6 489 35.0
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 2.9e-41 174.1 161 52.2
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 6.4e-41 172.9 209 49.3
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 5.5e-40 169.9 446 34.1
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 1.6e-39 168.3 410 33.4
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 5.1e-38 163.3 202 45.0
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 5.1e-38 163.3 417 34.1
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 2.7e-31 141.0 162 47.5
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 2.7e-31 141.0 159 44.7
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 6.0e-31 139.8 214 38.8
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 7.9e-31 139.4 161 47.2
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 1.1e-29 135.6 151 46.4
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 9.7e-29 132.5 402 30.1
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 9.7e-29 132.5 402 30.1
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 4.8e-28 130.2 342 30.7
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 2.4e-27 127.9 186 42.5
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 1.0e-25 122.5 200 39.0
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 1.0e-25 122.5 161 40.4
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 2.9e-25 120.9 338 30.8
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 4.2e-24 117.1 388 29.6
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 9.4e-24 115.9 260 32.7
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 1.8e-22 111.7 228 30.7
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 2.5e-21 107.8 148 45.9
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 1.2e-18 99.0 76 60.5
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 7.9e-15 86.3 67 61.2
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 2.8e-12 77.8 68 58.8
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 6.5e-09 66.6 122 39.3
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 1.4e-08 65.5 111 40.5


User provided reference genes

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