Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g22080 Schrenkiella parvula HOM05D007946 ORTHO05D004325 4.4e-159 564.7 306 100.0
BcaC08g46035 Brassica carinata HOM05D007946 ORTHO05D004325 6.7e-59 231.9 307 53.7
BcaB03g15376 Brassica carinata HOM05D007946 ORTHO05D004325 8.7e-59 231.5 308 51.9
A07p32380 Brassica napus HOM05D007946 ORTHO05D004325 1.3e-57 227.6 308 51.9
BraA07t30861Z Brassica rapa HOM05D007946 ORTHO05D004325 1.3e-57 227.6 308 51.9
BcaC08g43051 Brassica carinata HOM05D007946 ORTHO05D004325 1.4e-56 224.2 283 55.8
C06p03120 Brassica napus HOM05D007946 ORTHO05D004325 5.3e-56 222.2 249 59.4
BolC6t35430H Brassica oleracea HOM05D007946 ORTHO05D004325 5.3e-56 222.2 249 59.4
BcaB04g17058 Brassica carinata HOM05D007946 ORTHO05D004325 4.6e-52 209.1 254 54.7
Carub.0006s2523 Capsella rubella HOM05D007946 ORTHO05D004325 2.8e-41 173.3 285 46.3
BcaNung06357 Brassica carinata HOM05D007946 ORTHO05D004325 3.7e-41 172.9 225 51.6
BolC6t35593H Brassica oleracea HOM05D007946 ORTHO05D004325 3.7e-41 172.9 225 51.6
Carub.0006s2465 Capsella rubella HOM05D007946 ORTHO05D004325 3.1e-40 169.9 282 44.3
Thhalv10005452m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.2e-39 167.9 320 39.4
Thhalv10002808m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 3.5e-39 166.4 252 45.2
AL6G40080 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 1.3e-38 164.5 291 46.4
AL6G38960 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 3.2e-37 159.8 327 43.4
AL6G40090 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 4.2e-37 159.5 323 43.7
BcaB01g00130 Brassica carinata HOM05D007946 ORTHO05D004325 5.5e-37 159.1 244 41.8
AT5G26950 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 7.2e-37 158.7 322 44.4
AT5G27070 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 9.4e-37 158.3 298 47.7
Thhalv10005435m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 2.1e-36 157.1 299 38.5
AL6G38970 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 8.0e-36 155.2 306 43.8
Sp1g35160 Schrenkiella parvula HOM05D007946 ORTHO05D004325 4.4e-34 149.4 323 40.2
AT5G27944 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 3.7e-33 146.4 232 49.6
A09p48100 Brassica napus HOM05D007946 ORTHO05D004325 2.4e-32 143.7 258 40.3
C08p30320 Brassica napus HOM05D007946 ORTHO05D004325 7.0e-32 142.1 244 39.8
BolC6t35452H Brassica oleracea HOM05D007946 ORTHO05D004325 9.1e-32 141.7 244 38.9
C08p30340 Brassica napus HOM05D007946 ORTHO05D004325 2.0e-31 140.6 256 40.6
A08p14850 Brassica napus HOM05D007946 ORTHO05D004325 7.7e-31 138.7 284 36.6
BraA06t23637Z Brassica rapa HOM05D007946 ORTHO05D004325 1.3e-30 137.9 267 37.1
AT5G27580 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.7e-30 137.5 236 47.9
BolC8t50656H Brassica oleracea HOM05D007946 ORTHO05D004325 2.9e-30 136.7 256 40.2
BraA09t38796Z Brassica rapa HOM05D007946 ORTHO05D004325 2.9e-30 136.7 249 39.4
A09p32540 Brassica napus HOM05D007946 ORTHO05D004325 8.5e-30 135.2 249 39.0
A06p04330 Brassica napus HOM05D007946 ORTHO05D004325 4.2e-29 132.9 262 36.3
BcaNung06274 Brassica carinata HOM05D007946 ORTHO05D004325 1.2e-28 131.3 247 35.6
BolC6t35453H Brassica oleracea HOM05D007946 ORTHO05D004325 1.6e-28 131.0 272 35.3
BcaC08g43062 Brassica carinata HOM05D007946 ORTHO05D004325 4.7e-28 129.4 264 35.2
C06p03210 Brassica napus HOM05D007946 ORTHO05D004325 4.7e-28 129.4 272 34.9
A07p06920 Brassica napus HOM05D007946 ORTHO05D004325 1.8e-27 127.5 300 32.3
BraA07t28483Z Brassica rapa HOM05D007946 ORTHO05D004325 1.8e-27 127.5 300 32.3
A06p04090 Brassica napus HOM05D007946 ORTHO05D004325 5.2e-27 125.9 300 33.0
C06p38290 Brassica napus HOM05D007946 ORTHO05D004325 2.6e-26 123.6 108 65.7
BolC6t38928H Brassica oleracea HOM05D007946 ORTHO05D004325 2.6e-26 123.6 108 65.7
CARHR186490 Cardamine hirsuta HOM05D007946 ORTHO05D004325 2.2e-25 120.6 106 57.5
BcaB07g33730 Brassica carinata HOM05D007946 ORTHO05D004325 4.8e-25 119.4 278 35.6
BcaB07g33784 Brassica carinata HOM05D007946 ORTHO05D004325 4.8e-25 119.4 278 35.6
BcaC07g39831 Brassica carinata HOM05D007946 ORTHO05D004325 1.4e-24 117.9 258 38.4
CARHR186690 Cardamine hirsuta HOM05D007946 ORTHO05D004325 2.7e-23 113.6 106 54.7
AT5G26865 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 3.5e-23 113.2 119 52.1
BraA08t33469Z Brassica rapa HOM05D007946 ORTHO05D004325 1.0e-22 111.7 191 40.8
AT5G27050 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 2.2e-22 110.5 126 49.2
AT5G27090 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 3.2e-21 106.7 201 47.8
BraA09t40264Z Brassica rapa HOM05D007946 ORTHO05D004325 5.5e-21 105.9 259 35.5
BcaB07g33736 Brassica carinata HOM05D007946 ORTHO05D004325 6.1e-20 102.4 131 42.7
BolC6t35438H Brassica oleracea HOM05D007946 ORTHO05D004325 1.0e-19 101.7 149 40.9
BcaB01g00129 Brassica carinata HOM05D007946 ORTHO05D004325 1.8e-19 100.9 252 34.1
BraA09t38795Z Brassica rapa HOM05D007946 ORTHO05D004325 1.8e-19 100.9 258 34.5
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 2.3e-19 100.5 249 32.1
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.5e-18 97.8 189 34.9
A09p32530 Brassica napus HOM05D007946 ORTHO05D004325 2.6e-18 97.1 261 33.3
BcaNung05019 Brassica carinata HOM05D007946 ORTHO05D004325 4.4e-18 96.3 213 33.8
C06p03600 Brassica napus HOM05D007946 ORTHO05D004325 5.7e-18 95.9 121 43.8
BcaC07g39832 Brassica carinata HOM05D007946 ORTHO05D004325 9.8e-18 95.1 256 34.8
Carub.0003s1843 Capsella rubella HOM05D006887 ORTHO05D004325 2.2e-17 94.0 305 29.2
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 2.2e-17 94.0 187 35.8
BcaB04g17499 Brassica carinata HOM05D007946 ORTHO05D004325 3.7e-17 93.2 278 31.7
BcaC08g43096 Brassica carinata HOM05D007946 ORTHO05D004325 3.7e-17 93.2 211 33.6
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 6.3e-17 92.4 273 30.8
Carub.0007s3561 Capsella rubella HOM05D006887 ORTHO05D004325 1.4e-16 91.3 228 32.9
Sp1g35560 Schrenkiella parvula HOM05D007946 ORTHO05D004325 1.4e-16 91.3 226 35.0
AT5G40220 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.1e-16 90.1 214 35.0
AT3G18650 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 4.1e-16 89.7 273 30.0
AT5G40120 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 5.4e-16 89.4 243 32.5
AT5G41200 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 5.4e-16 89.4 213 35.7
AT5G38740 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.6e-15 87.8 209 35.9
AL7G49930 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 3.5e-15 86.7 193 34.2
AL7G50480 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 3.5e-15 86.7 193 34.7
AT5G39750 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.5e-15 86.7 219 34.2
AL7G50550 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 7.7e-15 85.5 198 33.3
BolC8t50655H Brassica oleracea HOM05D007946 ORTHO05D004325 1.7e-14 84.3 199 37.2
AT5G39810 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.9e-14 83.6 201 35.8
AL3G31960 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 3.8e-14 83.2 223 30.9
Carub.0007s3559 Capsella rubella HOM05D006887 ORTHO05D004325 8.6e-14 82.0 228 31.1
Carub.0007s3594 Capsella rubella HOM05D006887 ORTHO05D004325 1.9e-13 80.9 196 32.7
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.3e-13 80.1 183 33.9
Carub.0003s3325 Capsella rubella HOM05D006887 ORTHO05D004325 7.2e-13 79.0 212 31.1
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 7.2e-13 79.0 279 29.4
BcaB06g25916 Brassica carinata HOM05D006887 ORTHO05D004325 1.2e-12 78.2 260 29.2
AT4G11250 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.1e-12 77.4 228 28.9
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 2.8e-12 77.0 242 28.9
BcaC09g48822 Brassica carinata HOM05D006887 ORTHO05D004325 8.0e-12 75.5 177 32.8
C01p45590 Brassica napus HOM05D006887 ORTHO05D004325 8.0e-12 75.5 177 32.8
BolC1t04520H Brassica oleracea HOM05D006887 ORTHO05D004325 8.0e-12 75.5 177 32.8
BraA01t03660Z Brassica rapa HOM05D006887 ORTHO05D004325 1.0e-11 75.1 126 39.7
A01p35810 Brassica napus HOM05D006887 ORTHO05D004325 1.8e-11 74.3 126 38.9
AL8G42910 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 2.3e-11 73.9 220 30.5
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.8e-11 72.4 68 51.5
BcaC05g28586 Brassica carinata HOM05D006887 ORTHO05D004325 8.9e-11 72.0 198 31.3
BolC5t33421H Brassica oleracea HOM05D006887 ORTHO05D004325 8.9e-11 72.0 198 31.3
BraA05t21939Z Brassica rapa HOM05D006887 ORTHO05D004325 8.9e-11 72.0 202 30.7
A04p12860 Brassica napus HOM05D006887 ORTHO05D004325 1.2e-10 71.6 245 28.6
Sp1g35140 Schrenkiella parvula HOM05D007946 ORTHO05D004325 1.5e-10 71.2 243 30.5
A04p13000 Brassica napus HOM05D006887 ORTHO05D004325 2.0e-10 70.9 269 27.9
C06p38300 Brassica napus HOM05D000848 ORTHO05D000007 2.0e-10 70.9 123 43.9
BcaB08g34810 Brassica carinata HOM05D006887 ORTHO05D004325 5.7e-10 69.3 106 40.6
BraA04t16949Z Brassica rapa HOM05D006887 ORTHO05D004325 5.7e-10 69.3 244 28.3
BcaB06g27671 Brassica carinata HOM05D006887 ORTHO05D004325 9.8e-10 68.6 103 38.8
Aa31LG8G6660 Aethionema arabicum HOM05D006887 ORTHO05D004325 1.7e-09 67.8 210 28.1
BraA04t16959Z Brassica rapa HOM05D006887 ORTHO05D004325 1.7e-09 67.8 96 44.8
CARHR157630 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.7e-09 67.8 184 29.9
CARHR283740 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.7e-09 67.8 246 27.6
A04p12980 Brassica napus HOM05D006887 ORTHO05D004325 2.2e-09 67.4 126 36.5
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.2e-09 67.4 185 29.7
BraA04t16961Z Brassica rapa HOM05D006887 ORTHO05D004325 3.7e-09 66.6 248 30.2
Aa31LG8G6650 Aethionema arabicum HOM05D006887 ORTHO05D004325 8.3e-09 65.5 200 29.5
AT5G37415 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 8.3e-09 65.5 181 32.0
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 8.3e-09 65.5 176 35.2
THA.LOC109116041 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 8.3e-09 65.5 118 37.3
MBI09_g18620_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 1.4e-08 64.7 144 28.5
BolC4t26255H Brassica oleracea HOM05D006887 ORTHO05D004325 1.8e-08 64.3 118 37.3
BcaB06g27414 Brassica carinata HOM05D006887 ORTHO05D004325 2.4e-08 63.9 103 37.9
Sp2g28440 Schrenkiella parvula HOM05D006887 ORTHO05D004325 2.4e-08 63.9 199 31.7
BcaB06g27442 Brassica carinata HOM05D006887 ORTHO05D004325 3.2e-08 63.5 159 32.7
THA.LOC104804829 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 3.2e-08 63.5 118 36.4
THA.LOC104810872 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 3.2e-08 63.5 231 26.0
Aa31LG11G7790 Aethionema arabicum HOM05D006887 ORTHO05D004325 5.4e-08 62.8 94 40.4
BcaC01g03686 Brassica carinata HOM05D006887 ORTHO05D004325 5.4e-08 62.8 190 32.6
C03p49630 Brassica napus HOM05D006887 ORTHO05D004325 5.4e-08 62.8 190 32.6
BolC4t26260H Brassica oleracea HOM05D006887 ORTHO05D004325 5.4e-08 62.8 116 34.5
THA.LOC109116042 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 5.4e-08 62.8 118 36.4
Thhalv10022126m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 7.0e-08 62.4 165 31.5
MBI10_g35440_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 7.0e-08 62.4 88 38.6
ATR0605G195 Amborella trichopoda HOM05D000307 ORTHO05D000166 1.2e-07 61.6 67 43.3
BcaB06g27392 Brassica carinata HOM05D008478 ORTHO05D000740 1.2e-07 61.6 151 33.1
BcaB06g27394 Brassica carinata HOM05D006887 ORTHO05D004325 1.2e-07 61.6 156 31.4
C02p64040 Brassica napus HOM05D006887 ORTHO05D004325 1.6e-07 61.2 196 29.6
BolC2t12470H Brassica oleracea HOM05D006887 ORTHO05D004325 1.6e-07 61.2 196 29.6
CARHR262050 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.6e-07 61.2 51 58.8
Thhalv10019780m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.6e-07 61.2 129 32.6
BcaB06g27440 Brassica carinata HOM05D006887 ORTHO05D004325 2.0e-07 60.8 64 46.9
C04p46670 Brassica napus HOM05D006887 ORTHO05D004325 2.0e-07 60.8 230 26.5
BcaC03g18328 Brassica carinata HOM05D006887 ORTHO05D004325 2.7e-07 60.5 196 29.6
C04p46390 Brassica napus HOM05D006887 ORTHO05D004325 2.7e-07 60.5 96 40.6
C04p46750 Brassica napus HOM05D006887 ORTHO05D004325 2.7e-07 60.5 252 28.6
THA.LOC104820442 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.7e-07 60.5 87 42.5
BolC4t26262H Brassica oleracea HOM05D006887 ORTHO05D004325 4.6e-07 59.7 244 28.7
MBI16_g16371_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 1.0e-06 58.5 115 29.6
THA.LOC104806918 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.0e-06 58.5 87 41.4
A02p43880 Brassica napus HOM05D006887 ORTHO05D004325 1.3e-06 58.2 178 29.8
BraA02t09311Z Brassica rapa HOM05D006887 ORTHO05D004325 1.3e-06 58.2 178 29.8
Carub.0008s2621 Capsella rubella HOM05D006887 ORTHO05D004325 1.3e-06 58.2 183 28.4
MBI10_g26051_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 1.7e-06 57.8 161 29.8
MBI16_g19061_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 1.7e-06 57.8 115 28.7
Aa31LG8G6760 Aethionema arabicum HOM05D006887 ORTHO05D004325 2.9e-06 57.0 112 33.0
MBI10_g26049_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 2.9e-06 57.0 69 42.0
MBI16_g19060_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 2.9e-06 57.0 115 28.7
Manes.12G002900 Manihot esculenta HOM05D015295 ORTHO05D009969 5.0e-06 56.2 40 55.0
Manes.12G002901 Manihot esculenta HOM05D015295 ORTHO05D004325 5.0e-06 56.2 128 28.9
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 6.6e-06 55.8 192 29.2
THA.LOC104801949 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.6e-06 55.8 65 43.1
THA.LOC104801951 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.6e-06 55.8 65 43.1
THA.LOC104825360 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.6e-06 55.8 65 43.1
BcaB06g27670 Brassica carinata HOM05D006887 ORTHO05D004325 8.6e-06 55.5 110 31.8


User provided reference genes

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