Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 2.0e-101 372.5 190 100.0
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 3.7e-92 341.7 190 91.1
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 3.7e-92 341.7 190 91.1
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 1.1e-91 340.1 190 92.1
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 1.1e-91 340.1 187 90.9
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 1.4e-91 339.7 187 91.4
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 3.2e-91 338.6 190 90.0
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 1.6e-90 336.3 190 90.0
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 2.7e-90 335.5 190 90.5
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 4.6e-90 334.7 190 89.5
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 2.9e-89 332.0 187 89.8
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 1.1e-88 330.1 186 89.8
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 2.1e-87 325.9 185 89.7
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 7.0e-83 310.8 189 80.4
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 7.0e-83 310.8 189 80.4
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 7.0e-83 310.8 189 84.1
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 5.0e-81 304.7 191 81.2
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 8.6e-81 303.9 189 80.4
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 1.5e-80 303.1 190 81.1
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 7.3e-80 300.8 190 78.9
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 7.3e-80 300.8 189 78.8
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 1.2e-79 300.1 189 81.0
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 2.8e-79 298.9 188 80.9
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 2.3e-78 295.8 189 77.2
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 3.1e-78 295.4 189 77.8
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 3.1e-78 295.4 193 78.2
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 4.0e-78 295.0 189 77.2
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 5.2e-78 294.7 188 79.8
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 5.2e-78 294.7 189 77.8
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 6.8e-78 294.3 188 79.8
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 8.9e-78 293.9 188 77.7
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 8.9e-78 293.9 188 78.7
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 8.9e-78 293.9 189 77.2
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 1.5e-77 293.1 187 74.9
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 2.6e-77 292.4 189 78.3
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 3.4e-77 292.0 188 76.6
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 4.4e-77 291.6 189 77.2
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 5.8e-77 291.2 190 76.3
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 5.8e-77 291.2 189 76.7
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 7.5e-77 290.8 190 75.8
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 9.8e-77 290.4 187 77.0
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 9.8e-77 290.4 187 74.9
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 1.3e-76 290.0 188 77.7
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 1.7e-76 289.7 188 77.1
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 1.7e-76 289.7 188 77.1
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 2.2e-76 289.3 187 77.0
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 2.2e-76 289.3 189 74.6
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 2.2e-76 289.3 188 77.7
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 2.9e-76 288.9 189 77.8
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 4.9e-76 288.1 189 76.7
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 6.4e-76 287.7 188 75.5
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 6.4e-76 287.7 186 75.3
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 8.3e-76 287.3 188 75.5
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 8.3e-76 287.3 188 75.5
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 8.3e-76 287.3 191 78.5
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 1.4e-75 286.6 188 75.0
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.9e-75 286.2 188 75.0
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.4e-75 285.8 186 78.5
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 2.4e-75 285.8 190 74.2
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 5.4e-75 284.6 167 86.2
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 2.1e-74 282.7 197 74.1
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 3.5e-74 282.0 189 72.5
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 4.6e-74 281.6 190 75.3
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 4.6e-74 281.6 187 76.5
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 4.6e-74 281.6 193 75.6
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 7.8e-74 280.8 189 72.0
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 1.0e-73 280.4 191 75.9
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 1.0e-73 280.4 189 74.6
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 1.3e-73 280.0 190 75.3
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.7e-73 279.6 191 73.8
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 3.0e-73 278.9 190 74.2
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 6.6e-73 277.7 188 75.0
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 6.6e-73 277.7 188 71.8
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 6.6e-73 277.7 202 72.3
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 1.1e-72 276.9 188 71.8
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 1.1e-72 276.9 187 74.3
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 1.5e-72 276.6 190 73.7
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 1.5e-72 276.6 215 69.8
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 2.5e-72 275.8 192 72.4
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 3.3e-72 275.4 181 75.7
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 4.3e-72 275.0 186 74.7
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 3.6e-71 271.9 192 72.4
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 3.6e-71 271.9 186 73.1
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 5.2e-70 268.1 190 72.6
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 1.5e-69 266.5 177 74.0
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 1.5e-69 266.5 247 59.1
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 2.6e-69 265.8 245 59.2
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 1.3e-68 263.5 187 67.9
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 1.4e-62 243.4 161 77.6
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 2.4e-62 242.7 186 64.5
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 5.2e-62 241.5 186 64.0
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 3.8e-60 235.3 150 78.0
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 4.6e-58 228.4 159 75.5
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 7.8e-58 227.6 183 61.7
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 8.7e-57 224.2 186 66.1
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.3e-55 220.3 188 63.8
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 4.0e-54 215.3 187 63.6
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 1.2e-50 203.8 135 74.1
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 7.9e-50 201.1 252 51.6
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 1.9e-48 196.4 130 78.5
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 7.3e-48 194.5 136 68.4
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 4.0e-46 188.7 109 86.2
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 9.0e-46 187.6 113 82.3
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 1.2e-45 187.2 109 83.5
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 2.6e-45 186.0 141 68.8
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 9.3e-43 177.6 130 67.7
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 6.7e-41 171.4 201 47.8
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 4.3e-40 168.7 185 48.1
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 7.6e-37 157.9 85 90.6
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 9.3e-35 151.0 104 66.3
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 6.0e-34 148.3 102 73.5
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 1.5e-32 143.7 113 63.7
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 9.6e-32 141.0 130 55.4
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 1.9e-27 126.7 137 54.0
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 9.3e-27 124.4 138 55.8
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 9.7e-24 114.4 200 37.5
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 4.8e-23 112.1 134 50.0
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 4.1e-22 109.0 60 88.3
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.1e-16 90.9 74 63.5
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 4.5e-13 79.0 74 58.1
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 5.5e-11 72.0 109 42.2
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 2.3e-09 66.6 50 64.0
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 4.4e-08 62.4 51 56.9


User provided reference genes

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