Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g16690 Schrenkiella parvula HOM05D003901 ORTHO05D004511 0.0e+00 1181.0 610 100.0
Thhalv10010089m.g Eutrema salsugineum HOM05D003901 ORTHO05D004511 4.0e-220 768.5 489 81.2
BcaB01g01161 Brassica carinata HOM05D003901 ORTHO05D004511 2.9e-215 752.3 487 79.7
BcaB02g10752 Brassica carinata HOM05D003901 ORTHO05D004511 3.2e-214 748.8 490 79.2
AL5G22600 Arabidopsis lyrata HOM05D003901 ORTHO05D004511 9.4e-214 747.3 487 79.3
AT3G44530 Arabidopsis thaliana HOM05D003901 ORTHO05D004511 9.4e-214 747.3 490 79.2
Carub.0005s1017 Capsella rubella HOM05D003901 ORTHO05D004511 2.6e-211 739.2 487 78.6
A06p21860 Brassica napus HOM05D003901 ORTHO05D004511 4.8e-210 734.9 485 78.6
BraA06t25277Z Brassica rapa HOM05D003901 ORTHO05D004511 6.3e-210 734.6 482 78.8
CARHR104350 Cardamine hirsuta HOM05D003901 ORTHO05D004511 2.0e-208 729.6 487 77.6
BcaC01g02054 Brassica carinata HOM05D003901 ORTHO05D004511 1.3e-207 726.9 479 78.5
C03p69110 Brassica napus HOM05D003901 ORTHO05D004511 1.3e-207 726.9 479 78.5
BolC3t19166H Brassica oleracea HOM05D003901 ORTHO05D004511 1.3e-207 726.9 479 78.5
Aa31LG4G13900 Aethionema arabicum HOM05D003901 ORTHO05D004511 1.6e-181 640.2 503 70.2
THA.LOC104810914 Tarenaya hassleriana HOM05D003901 ORTHO05D004511 9.9e-163 577.8 476 65.3
Sp5g16720 Schrenkiella parvula HOM05D003901 ORTHO05D004511 3.9e-151 539.3 288 92.7
Ciclev10027719m.g Citrus clementina HOM05D003901 ORTHO05D004511 1.4e-145 520.8 449 62.6
Atru.chr3.3302 Acer truncatum HOM05D003901 ORTHO05D004511 1.9e-145 520.4 452 62.2
GSVIVG01036170001 Vitis vinifera HOM05D003901 ORTHO05D004511 9.3e-145 518.1 455 60.7
Duzib150G1114 Durio zibethinus HOM05D003901 ORTHO05D004511 3.5e-144 516.2 466 60.1
Duzib170G0819 Durio zibethinus HOM05D003901 ORTHO05D004511 1.3e-143 514.2 480 58.8
Rhsim13G0109800 Rhododendron simsii HOM05D003901 ORTHO05D004511 2.3e-143 513.5 445 62.0
Thecc.09G286400 Theobroma cacao HOM05D003901 ORTHO05D004511 3.0e-143 513.1 462 60.8
Potri.004G184900 Populus trichocarpa HOM05D003901 ORTHO05D004511 5.1e-143 512.3 499 57.7
Potri.009G144800 Populus trichocarpa HOM05D003901 ORTHO05D004511 5.1e-143 512.3 432 63.9
Manes.04G005300 Manihot esculenta HOM05D003901 ORTHO05D004511 8.7e-143 511.5 461 60.7
Gohir.D08G014900 Gossypium hirsutum HOM05D003901 ORTHO05D004511 1.1e-142 511.1 462 61.9
Gorai.004G009300 Gossypium raimondii HOM05D003901 ORTHO05D004511 3.3e-142 509.6 462 61.9
CANSAT54G2221 Cannabis sativa HOM05D003901 ORTHO05D004511 9.6e-142 508.1 489 58.3
arahy.Tifrunner.gnm1.ann1.3X8FVR Arachis hypogaea HOM05D003901 ORTHO05D004511 1.3e-141 507.7 418 64.6
Gorai.009G086800 Gossypium raimondii HOM05D003901 ORTHO05D004511 1.6e-141 507.3 466 60.1
CiPaw.14G101900 Carya illinoinensis HOM05D003901 ORTHO05D004511 2.1e-141 506.9 457 60.0
Sabra09G0112300 Salix brachista HOM05D003901 ORTHO05D004511 6.2e-141 505.4 499 57.5
Sabra09G0115000 Salix brachista HOM05D003901 ORTHO05D004511 8.2e-141 505.0 499 57.5
ClCG02G022110 Citrullus lanatus HOM05D003901 ORTHO05D004511 2.4e-140 503.4 457 59.1
Sed0027491 Sechium edule HOM05D003901 ORTHO05D004511 2.4e-140 503.4 472 58.3
Cfa010046 Carpinus fangiana HOM05D003901 ORTHO05D004511 3.1e-140 503.1 456 61.0
PGR102G2249 Punica granatum HOM05D003901 ORTHO05D004511 3.1e-140 503.1 413 65.1
Sc12g0004380 Simmondsia chinensis HOM05D003901 ORTHO05D004511 4.1e-140 502.7 507 55.4
Gohir.A08G004600 Gossypium hirsutum HOM05D003901 ORTHO05D004511 5.3e-140 502.3 494 58.7
QL01p012653 Quercus lobata HOM05D003901 ORTHO05D004511 9.0e-140 501.5 488 56.6
CSS0003254 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 1.7e-138 497.3 485 57.7
TWI31G1346 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 2.2e-138 496.9 451 60.1
vmacro03304 Vaccinium macrocarpon HOM05D003901 ORTHO05D004511 5.0e-138 495.7 419 61.8
Glyma.12G183500 Glycine max HOM05D003901 ORTHO05D004511 1.1e-137 494.6 487 58.1
Glyma.13G317500 Glycine max HOM05D003901 ORTHO05D004511 4.2e-137 492.7 472 59.7
MELO3C021430.2 Cucumis melo HOM05D003901 ORTHO05D004511 5.5e-137 492.3 476 57.6
CsaV3_6G014950 Cucumis sativus L. HOM05D003901 ORTHO05D004511 2.1e-136 490.3 442 59.5
Lalb_Chr03g0028001 Lupinus albus HOM05D003901 ORTHO05D004511 2.1e-136 490.3 476 58.2
Medtr4g053675 Medicago truncatula HOM05D003901 ORTHO05D004511 2.1e-136 490.3 417 63.5
CSS0013179 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 2.7e-136 490.0 455 59.1
Haze_23407 Corylus avellana HOM05D003901 ORTHO05D004511 4.6e-136 489.2 453 58.9
Eucgr.B03876 Eucalyptus grandis HOM05D003901 ORTHO05D004511 6.1e-136 488.8 427 61.4
Psat5g093200 Pisum sativum HOM05D003901 ORTHO05D004511 6.1e-136 488.8 422 62.3
Prupe.8G049600 Prunus persica HOM05D003901 ORTHO05D004511 7.9e-136 488.4 452 58.8
CSS0026986 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 1.0e-135 488.0 420 62.1
TPR.G23813 Trifolium pratense HOM05D003901 ORTHO05D004511 1.8e-135 487.3 464 59.1
MSTRG.18747 Avicennia marina HOM05D003901 ORTHO05D004511 2.3e-135 486.9 435 61.1
TPR.G17239 Trifolium pratense HOM05D003901 ORTHO05D004511 3.0e-135 486.5 417 63.3
Lj3g0014833 Lotus japonicus HOM05D003901 ORTHO05D004511 8.7e-135 485.0 418 63.2
MD00G1078300 Malus domestica HOM05D003901 ORTHO05D004511 8.7e-135 485.0 421 60.3
TAR623G0259 Trochodendron aralioides HOM05D003901 ORTHO05D004511 1.1e-134 484.6 436 59.2
Ca_19387_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 1.9e-134 483.8 449 59.2
Ca_19390_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 1.9e-134 483.8 449 59.2
SGA_v2.0_scaffold147G36366 Striga asiatica HOM05D003901 ORTHO05D004511 1.9e-134 483.8 441 59.6
Nitab4.5_0002837g0010 Nicotiana tabacum HOM05D003901 ORTHO05D004511 2.5e-134 483.4 473 56.4
Nn1g08411 Nelumbo nucifera HOM05D003901 ORTHO05D004511 3.3e-134 483.0 448 59.2
FAN11G2495 Fragaria x ananassa HOM05D003901 ORTHO05D004511 1.3e-133 481.1 448 58.9
Psat5g256560 Pisum sativum HOM05D003901 ORTHO05D004511 2.8e-133 479.9 470 57.2
RcHm_v2.0_Chr5g0044121 Rosa chinensis HOM05D003901 ORTHO05D004511 2.8e-133 479.9 491 55.8
FvH4_3g24580 Fragaria vesca HOM05D003901 ORTHO05D004511 3.7e-133 479.6 450 58.4
Migut.D02350 Erythranthe guttata HOM05D003901 ORTHO05D004511 4.8e-133 479.2 418 61.0
SalBow6G4040 Salvia bowleyana HOM05D003901 ORTHO05D004511 6.3e-133 478.8 507 53.6
HanXRQChr13g0397211 Helianthus annuus HOM05D003901 ORTHO05D004511 8.2e-133 478.4 410 62.0
Medtr2g086140 Medicago truncatula HOM05D003901 ORTHO05D004511 1.1e-132 478.0 437 60.4
Lalb_Chr19g0136621 Lupinus albus HOM05D003901 ORTHO05D004511 1.4e-132 477.6 468 57.3
Lalb_Chr01g0004811 Lupinus albus HOM05D003901 ORTHO05D004511 1.8e-132 477.2 454 59.0
ECA233G5986 Erigeron canadensis HOM05D003901 ORTHO05D004511 3.1e-132 476.5 475 56.8
Hund20872 Selenicereus undatus HOM05D003901 ORTHO05D004511 3.1e-132 476.5 485 55.7
Ca_19879_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 5.3e-132 475.7 419 61.8
RcHm_v2.0_Chr1g0317731 Rosa chinensis HOM05D003901 ORTHO05D004511 9.0e-132 474.9 465 55.7
FAN25G0520 Fragaria x ananassa HOM05D003901 ORTHO05D004511 1.2e-131 474.6 450 57.8
Sabra04G0124700 Salix brachista HOM05D003901 ORTHO05D004511 1.2e-131 474.6 572 50.2
Nitab4.5_0000234g0130 Nicotiana tabacum HOM05D003901 ORTHO05D004511 1.5e-131 474.2 472 55.5
Peaxi162Scf00086g02615 Petunia axillaris HOM05D003901 ORTHO05D004511 1.5e-131 474.2 459 58.4
PGSC0003DMG400007404 Solanum tuberosum HOM05D003901 ORTHO05D004511 2.6e-131 473.4 452 57.3
CAN.G942.7 Capsicum annuum HOM05D003901 ORTHO05D004511 4.5e-131 472.6 454 57.5
Lsat_1_v5_gn_6_40560 Lactuca sativa HOM05D003901 ORTHO05D004511 1.3e-130 471.1 428 60.0
VMungo1080G0029 Vigna mungo HOM05D003901 ORTHO05D004511 1.3e-130 471.1 471 57.3
FAN16G3118 Fragaria x ananassa HOM05D003901 ORTHO05D004511 1.7e-130 470.7 450 57.8
TWI79G1394 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 1.7e-130 470.7 452 57.3
Sopen11g026900 Solanum pennellii HOM05D003901 ORTHO05D004511 6.5e-130 468.8 472 55.7
EL10Ac7g15802 Beta vulgaris HOM05D003901 ORTHO05D004511 1.4e-129 467.6 442 57.5
Ah.08g215860 Amaranthus hybridus HOM05D003901 ORTHO05D004511 1.9e-129 467.2 441 58.0
Phvul.005G125300 Phaseolus vulgaris HOM05D003901 ORTHO05D004511 3.2e-129 466.5 421 61.3
PSO384G0212 Papaver somniferum HOM05D003901 ORTHO05D004511 2.1e-128 463.8 430 58.6
Solyc11g067200.2 Solanum lycopersicum HOM05D003901 ORTHO05D004511 4.6e-128 462.6 470 55.3
AUR62039227 Chenopodium quinoa HOM05D003901 ORTHO05D004511 6.1e-128 462.2 480 54.4
Cc01_g09440 Coffea canephora HOM05D003901 ORTHO05D004511 7.9e-128 461.8 341 67.7
Cc03_g06690 Coffea canephora HOM05D003901 ORTHO05D004511 7.9e-128 461.8 341 67.7
FAN21G1062 Fragaria x ananassa HOM05D003901 ORTHO05D004511 3.9e-127 459.5 481 54.5
FvH4_7g01610 Fragaria vesca HOM05D003901 ORTHO05D004511 5.1e-127 459.1 470 54.3
FAN03G3037 Fragaria x ananassa HOM05D003901 ORTHO05D004511 5.1e-127 459.1 483 53.2
Gohir.D05G084900 Gossypium hirsutum HOM05D003901 ORTHO05D004511 1.1e-126 458.0 336 69.6
AUR62009782 Chenopodium quinoa HOM05D003901 ORTHO05D004511 1.5e-126 457.6 493 52.7
PSO339G1552 Papaver somniferum HOM05D003901 ORTHO05D004511 1.5e-126 457.6 430 58.1
DCAR_012182 Daucus carota HOM05D003901 ORTHO05D004511 2.5e-126 456.8 458 57.6
HPP92_006803 Vanilla planifolia HOM05D003901 ORTHO05D004511 1.8e-124 450.7 400 60.2
Lj1C241G3 Lonicera japonica HOM05D003901 ORTHO05D004511 9.1e-124 448.4 477 53.2
Aqoxy2G01263 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 2.0e-123 447.2 438 55.9
Gohir.A05G082000 Gossypium hirsutum HOM05D003901 ORTHO05D004511 3.4e-123 446.4 325 70.2
MD10G1043400 Malus domestica HOM05D003901 ORTHO05D004511 5.9e-123 445.7 336 66.7
CDE08G0670 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 2.2e-122 443.7 416 57.0
CDE06G1793 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 1.6e-120 437.6 416 57.0
Os09g0567700 Oryza sativa ssp. japonica HOM05D003901 ORTHO05D004511 1.5e-118 431.0 414 56.8
SHI06109 Sapria himalayana HOM05D003901 ORTHO05D004511 4.4e-118 429.5 453 53.2
Aqoxy4G02822 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 1.8e-116 424.1 453 51.9
ATR0820G249 Amborella trichopoda HOM05D003901 ORTHO05D004511 3.1e-116 423.3 398 57.5
Duzib168G1973 Durio zibethinus HOM05D003901 ORTHO05D004511 2.0e-115 420.6 461 52.7
FAN06G4251 Fragaria x ananassa HOM05D003901 ORTHO05D004511 2.6e-115 420.2 336 64.0
AUR62044072 Chenopodium quinoa HOM05D003901 ORTHO05D004511 3.5e-115 419.9 429 55.5
Oeu058251.1 Olea europaea HOM05D003901 ORTHO05D004511 1.0e-114 418.3 352 60.5
Zm00001eb121570 Zea mays HOM05D003901 ORTHO05D004511 1.3e-114 417.9 401 56.4
Ah.15g095680 Amaranthus hybridus HOM05D003901 ORTHO05D004511 3.8e-114 416.4 398 54.8
Dinv42569 Davidia involucrata HOM05D003901 ORTHO05D004511 1.5e-113 414.5 301 72.1
Actinidia07234 Actinidia chinensis HOM05D003901 ORTHO05D004511 3.6e-104 383.3 462 49.6
Sp5g16710 Schrenkiella parvula HOM05D003901 ORTHO05D004511 1.5e-102 377.9 226 86.7
Actinidia24200 Actinidia chinensis HOM05D003901 ORTHO05D004511 9.1e-100 368.6 488 46.9
FAN25G0348 Fragaria x ananassa HOM05D003901 ORTHO05D004511 3.7e-93 346.7 373 53.1
Lj2C981T10 Lonicera japonica HOM05D003901 ORTHO05D004511 2.3e-90 337.4 300 61.7
SGA_v2.0_scaffold22G09887 Striga asiatica HOM05D003901 ORTHO05D004511 2.9e-90 337.0 407 48.9
SEGI_40901 Sequoiadendron giganteum HOM05D003901 ORTHO05D004511 3.2e-84 317.0 325 52.3
Zm00001eb307860 Zea mays HOM05D003901 ORTHO05D004511 4.6e-83 313.2 282 58.2
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 6.4e-77 292.7 384 43.8
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 4.1e-76 290.0 378 44.4
Pp3c27_1720 Physcomitrium patens HOM05D003901 ORTHO05D004511 3.3e-73 280.4 350 44.3
Pp3c16_16320 Physcomitrium patens HOM05D003901 ORTHO05D004511 3.6e-72 276.9 408 40.9
COL.COLO4_19917 Corchorus olitorius HOM05D003901 ORTHO05D004511 1.2e-64 251.9 475 37.7
Dinv29460 Davidia involucrata HOM05D003901 ORTHO05D004511 7.1e-60 236.1 233 57.1
Mapoly0043s0108 Marchantia polymorpha HOM05D003901 ORTHO05D004511 1.7e-58 231.5 362 39.2
Actinidia37329 Actinidia chinensis HOM05D003901 ORTHO05D004511 3.9e-58 230.3 243 53.5
CBR_g60059 Chara braunii HOM05D003901 ORTHO05D004511 5.8e-46 189.9 406 32.5
Cpa.g.c36505.3 Carica papaya HOM05D003901 ORTHO05D004511 1.5e-33 148.7 84 78.6
Oeu038978.1 Olea europaea HOM05D003901 ORTHO05D004511 1.3e-32 145.6 152 51.3
Actinidia35457 Actinidia chinensis HOM05D003901 ORTHO05D002466 8.7e-26 122.9 117 57.3
TPR.G7702 Trifolium pratense HOM05D003901 ORTHO05D004511 1.9e-25 121.7 65 83.1
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 3.3e-25 120.9 245 33.9
AagrBONN_evm.TU.Sc2ySwM_228.5081 Anthoceros agrestis HOM05D003901 ORTHO05D004511 2.1e-24 118.2 195 37.4
MCO11G428 Micromonas commoda HOM05D003901 ORTHO05D004511 1.1e-23 115.9 357 30.3
MCO11G429 Micromonas commoda HOM05D003901 ORTHO05D004511 1.1e-23 115.9 357 30.3
FAN25G0558 Fragaria x ananassa HOM05D003901 ORTHO05D004511 5.3e-23 113.6 70 74.3
Dinv29461 Davidia involucrata HOM05D003901 ORTHO05D004511 1.3e-21 109.0 70 70.0
RcHm_v2.0_Chr1g0317741 Rosa chinensis HOM05D003901 ORTHO05D004511 1.7e-21 108.6 70 70.0
Actinidia24202 Actinidia chinensis HOM05D003901 ORTHO05D004511 2.5e-20 104.8 70 65.7
Aqoxy2G01563 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 1.3e-18 99.0 70 65.7
CDE06G1438 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 3.1e-15 87.8 45 80.0
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 1.5e-14 85.5 331 24.8
Cfa026613 Carpinus fangiana HOM05D003901 ORTHO05D004511 3.2e-12 77.8 167 28.7
Cpa.g.sc32.110 Carica papaya HOM05D000796 ORTHO05D004511 7.2e-12 76.6 76 59.2
Lj1A234G35 Lonicera japonica HOM05D003901 ORTHO05D004511 7.2e-12 76.6 37 89.2
FAN25G0964 Fragaria x ananassa HOM05D003901 ORTHO05D004511 2.7e-11 74.7 74 55.4
Prupe.8G049400 Prunus persica HOM05D003901 ORTHO05D004511 4.6e-11 73.9 39 79.5
Cpa.g.c45307 Carica papaya HOM05D003901 ORTHO05D004511 7.9e-11 73.2 43 69.8
Lsat_1_v5_gn_2_133321 Lactuca sativa HOM05D003901 ORTHO05D004511 5.1e-10 70.5 103 47.6
Prupe.8G049500 Prunus persica HOM05D003901 ORTHO05D004511 6.7e-10 70.1 67 56.7
SEGI_08454 Sequoiadendron giganteum HOM05D003901 ORTHO05D004511 2.6e-09 68.2 37 78.4
Manes.11G160250 Manihot esculenta HOM05D003901 ORTHO05D004511 8.2e-08 63.2 39 74.4
Oeu058252.1 Olea europaea HOM05D003901 ORTHO05D004511 8.2e-08 63.2 77 51.9
Oeu038979.1 Olea europaea HOM05D003901 ORTHO05D004511 2.6e-06 58.2 77 46.8
Sabra09G0112400 Salix brachista HOM05D000477 ORTHO05D000338 5.9e-06 57.0 55 58.2


User provided reference genes

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