Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 0.0e+00 1196.4 614 100.0
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 0.0e+00 1077.0 607 92.3
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 4.2e-312 1074.7 599 93.2
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 8.4e-312 1073.2 607 91.9
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 1.7e-311 1072.0 598 93.0
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 3.8e-311 1070.8 598 92.8
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 5.0e-311 1070.5 603 92.4
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 5.4e-310 1067.0 600 92.7
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 5.1e-292 1007.3 597 88.3
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 7.4e-291 1003.4 598 88.3
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 1.3e-290 1002.7 598 87.1
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 4.5e-288 994.2 597 86.1
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 3.2e-278 961.4 579 86.7
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 2.0e-248 862.4 602 76.1
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 2.3e-228 795.8 584 72.3
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 7.5e-227 790.8 607 68.4
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 1.7e-223 779.6 604 68.0
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 6.6e-223 777.7 565 71.7
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 2.5e-222 775.8 595 69.2
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 5.6e-222 774.6 534 74.2
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 7.3e-222 774.2 562 71.4
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 1.6e-221 773.1 507 75.5
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 1.4e-220 770.0 606 68.8
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.1e-220 768.8 599 67.1
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 5.2e-220 768.1 581 70.2
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 6.8e-220 767.7 543 72.7
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 6.8e-220 767.7 543 72.7
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 1.2e-219 766.9 525 73.9
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.0e-219 766.1 573 70.5
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 2.6e-219 765.8 602 67.4
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 2.6e-219 765.8 602 68.4
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 7.5e-219 764.2 553 71.1
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 1.3e-218 763.5 527 72.9
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 2.2e-218 762.7 509 74.7
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 4.9e-218 761.5 600 67.0
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 8.3e-218 760.8 600 67.2
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 1.1e-217 760.4 558 71.3
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 1.4e-217 760.0 559 70.7
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 1.4e-217 760.0 513 74.1
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 1.4e-217 760.0 535 72.1
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 1.9e-217 759.6 588 68.5
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 4.1e-217 758.4 607 66.6
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 7.0e-217 757.7 549 70.3
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 3.5e-216 755.4 542 70.8
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 6.0e-216 754.6 545 71.0
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 1.1e-214 750.4 584 67.3
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 9.5e-214 747.3 590 68.0
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 9.5e-214 747.3 566 69.8
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 2.1e-213 746.1 611 65.8
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 3.6e-213 745.3 602 66.1
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 6.2e-213 744.6 612 65.5
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.8e-212 743.0 510 72.4
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 3.1e-212 742.3 531 71.8
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 4.0e-212 741.9 571 67.6
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 4.0e-212 741.9 604 65.7
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 4.0e-212 741.9 583 66.9
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 5.2e-212 741.5 606 66.3
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 5.2e-212 741.5 534 70.0
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 6.8e-212 741.1 521 72.9
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 1.5e-211 740.0 610 66.4
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 2.0e-211 739.6 625 65.6
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 2.0e-211 739.6 601 65.9
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 5.8e-211 738.0 542 70.3
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.3e-210 736.9 582 67.9
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 2.9e-210 735.7 596 66.6
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 6.4e-210 734.6 500 74.4
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 8.3e-210 734.2 599 65.1
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.4e-209 733.4 612 65.7
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.2e-209 732.3 565 68.1
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 4.1e-209 731.9 550 68.4
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 9.2e-209 730.7 550 69.1
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 9.2e-209 730.7 528 70.8
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 1.6e-208 729.9 602 64.6
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 1.3e-207 726.9 548 68.2
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 1.3e-207 726.9 553 67.6
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 3.1e-204 715.7 574 64.3
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 8.9e-204 714.1 547 68.0
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.2e-203 713.8 514 69.5
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 4.4e-203 711.8 547 67.6
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.8e-203 711.4 643 61.3
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 1.7e-202 709.9 565 66.9
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 7.3e-198 694.5 676 58.0
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 8.1e-197 691.0 578 64.4
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 4.0e-196 688.7 547 66.9
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 8.9e-196 687.6 477 71.1
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 2.0e-195 686.4 607 62.9
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 5.8e-195 684.9 583 63.0
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 7.8e-192 674.5 622 58.8
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 2.3e-191 672.9 460 74.3
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 6.2e-189 664.8 563 61.8
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 8.1e-189 664.5 658 58.7
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.4e-188 663.7 594 61.3
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 9.9e-187 657.5 511 67.5
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.9e-183 645.6 601 57.7
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 3.9e-183 645.6 459 70.6
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 1.1e-182 644.0 575 62.1
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 4.8e-181 638.6 491 63.5
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 4.9e-178 628.6 578 58.5
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 9.6e-174 614.4 582 58.6
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 9.6e-174 614.4 652 54.1
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 1.7e-162 577.0 439 66.3
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 7.1e-161 571.6 483 64.2
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.3e-159 567.4 391 72.6
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 8.7e-159 564.7 559 55.5
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.3e-157 560.8 440 62.0
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.4e-156 556.6 526 57.2
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 8.2e-133 478.4 574 49.7
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 3.2e-129 466.5 345 69.3
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 7.2e-129 465.3 494 51.6
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 9.4e-129 464.9 443 51.2
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 6.1e-128 462.2 456 51.1
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 4.0e-127 459.5 484 50.8
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 7.0e-124 448.7 412 64.1
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 6.1e-120 435.6 442 53.6
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 2.8e-117 426.8 420 58.8
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 5.4e-116 422.5 509 50.1
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 6.1e-112 409.1 429 55.5
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 6.1e-104 382.5 487 44.8
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.1e-103 380.2 266 72.9
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.3e-93 348.2 283 60.8
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 4.4e-86 323.2 204 75.0
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 1.3e-74 285.0 173 79.2
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 2.8e-72 277.3 216 63.4
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 4.0e-71 273.5 262 51.5
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.1e-68 265.4 202 62.4
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.2e-67 261.9 391 39.1
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 8.7e-66 255.8 277 51.6
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 3.3e-65 253.8 212 66.5
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 1.9e-57 228.0 293 44.0
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.9e-57 228.0 178 64.0
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.1e-56 222.6 277 47.7
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 6.9e-55 219.5 129 79.8
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.3e-45 188.7 126 73.0
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 2.9e-45 187.6 113 79.6
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.1e-43 181.4 177 57.1
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 8.7e-42 176.0 272 40.1
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 2.0e-33 148.3 269 36.1
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 3.3e-33 147.5 144 56.9
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.4e-31 141.4 122 58.2
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 9.1e-31 139.4 106 64.2
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.0e-26 125.9 95 67.4
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 3.3e-25 120.9 112 55.4
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 7.4e-25 119.8 267 33.0
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 6.3e-24 116.7 120 50.8
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 8.5e-21 106.3 77 67.5
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.5e-20 105.5 96 55.2
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.7e-19 101.3 112 47.3
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 3.6e-19 100.9 56 89.3
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 6.1e-19 100.1 83 55.4
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 1.5e-17 95.5 57 82.5
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.5e-17 95.5 228 33.8
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 1.7e-16 92.0 59 76.3
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 9.1e-15 86.3 69 62.3
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 2.0e-14 85.1 54 75.9
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 1.3e-13 82.4 69 59.4
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.1e-12 79.3 246 29.3
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 8.0e-11 73.2 278 26.3
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 6.8e-10 70.1 109 39.4
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 8.3e-08 63.2 40 77.5
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 9.1e-07 59.7 36 77.8


User provided reference genes

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