Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 0.0e+00 1371.3 700 100.0
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 6.7e-256 887.5 603 77.4
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 1.1e-253 880.2 606 76.7
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 7.2e-250 867.5 603 75.5
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 9.4e-250 867.1 603 76.0
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 1.2e-249 866.7 604 75.7
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 1.6e-249 866.3 606 74.9
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 2.1e-249 865.9 603 75.8
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 2.7e-249 865.5 603 75.6
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 6.1e-249 864.4 603 75.5
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 5.3e-245 851.3 604 75.2
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 5.2e-240 834.7 578 76.1
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 4.1e-229 798.5 599 70.1
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 1.7e-211 740.0 600 65.7
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 4.4e-183 645.6 596 58.7
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 4.8e-177 625.5 710 51.4
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 3.4e-175 619.4 606 56.9
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 5.8e-175 618.6 599 56.6
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 2.2e-174 616.7 599 57.1
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 1.4e-173 614.0 605 55.9
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 7.1e-173 611.7 603 55.4
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 7.9e-172 608.2 606 55.0
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 1.0e-171 607.8 612 54.2
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 1.0e-171 607.8 603 56.1
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 1.3e-171 607.4 606 55.0
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 2.3e-171 606.7 606 55.0
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 3.3e-170 602.8 647 52.1
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 8.1e-169 598.2 591 55.2
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 8.1e-169 598.2 606 55.3
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 9.0e-168 594.7 605 54.9
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 3.4e-167 592.8 612 53.1
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 2.2e-166 590.1 602 54.5
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 1.4e-165 587.4 602 54.7
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 1.9e-165 587.0 611 53.7
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 1.9e-165 587.0 705 49.9
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 7.1e-165 585.1 604 55.0
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 6.0e-164 582.0 603 53.7
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 1.8e-163 580.5 594 54.0
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 2.3e-163 580.1 604 53.3
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 3.9e-163 579.3 606 53.8
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 6.7e-163 578.6 599 53.6
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 6.7e-163 578.6 603 53.7
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 1.1e-162 577.8 624 51.0
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 2.1e-161 573.5 603 53.2
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 2.8e-161 573.2 600 54.7
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 8.1e-161 571.6 601 52.2
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 5.3e-160 568.9 610 52.8
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 1.3e-158 564.3 706 48.2
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 2.9e-158 563.1 614 51.5
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 2.9e-158 563.1 704 47.9
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 8.4e-158 561.6 600 53.3
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 1.1e-157 561.2 691 49.5
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 1.1e-157 561.2 483 60.7
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 1.9e-157 560.5 602 52.7
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 1.9e-157 560.5 600 53.3
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 3.2e-157 559.7 577 53.0
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 5.5e-157 558.9 604 52.5
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 9.3e-157 558.1 599 50.8
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 1.2e-156 557.8 606 50.0
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 1.6e-156 557.4 610 51.6
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 4.6e-156 555.8 605 50.4
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 1.0e-155 554.7 612 51.1
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 3.9e-155 552.7 604 51.2
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 8.7e-155 551.6 582 52.1
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 1.9e-154 550.4 686 48.3
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 3.3e-154 549.7 705 47.4
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 4.3e-154 549.3 622 50.2
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 5.7e-154 548.9 712 47.1
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 9.6e-154 548.1 747 45.1
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 1.3e-153 547.7 599 51.9
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 6.3e-153 545.4 599 52.1
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 6.3e-153 545.4 592 52.4
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 3.1e-152 543.1 592 52.0
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.6e-151 540.0 617 49.3
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 3.4e-151 539.7 600 49.7
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 4.5e-151 539.3 599 51.4
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 1.7e-150 537.3 599 51.1
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 6.5e-150 535.4 628 50.0
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 5.5e-149 532.3 684 48.4
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 2.2e-145 520.4 595 50.4
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 7.7e-143 511.9 493 56.0
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 1.1e-141 508.1 564 51.6
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 3.2e-141 506.5 648 46.0
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 1.5e-135 487.6 598 47.3
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 3.4e-135 486.5 658 45.4
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 7.7e-135 485.3 601 47.9
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 1.7e-134 484.2 635 46.6
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 2.9e-134 483.4 615 45.9
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 5.5e-133 479.2 608 46.9
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 1.7e-129 467.6 564 48.8
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 3.7e-129 466.5 641 43.2
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 7.7e-119 432.2 513 49.5
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 5.7e-114 416.0 413 52.1
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 4.8e-113 412.9 566 45.4
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 6.5e-110 402.5 356 58.1
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 9.8e-106 388.7 509 43.2
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 7.8e-103 379.0 583 42.0
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 9.5e-101 372.1 494 44.1
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.9e-94 350.1 227 70.5
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 2.1e-92 344.4 230 69.1
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 2.0e-90 337.8 632 36.9
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 2.2e-36 158.3 209 43.5
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.0e-30 139.4 100 66.0
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.3e-30 138.3 102 66.7
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 3.0e-30 137.9 407 30.0
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.3e-28 132.5 102 64.7
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.7e-28 131.0 98 65.3
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 2.9e-25 121.3 223 43.0
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.4e-21 107.5 82 62.2
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 2.2e-20 105.1 182 39.6
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 3.7e-20 104.4 82 62.2
SpUn0400_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 3.9e-14 84.3 48 89.6
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.8e-12 78.2 47 74.5
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 8.2e-12 76.6 386 23.6
Sp6g23360 Schrenkiella parvula HOM05D001076 ORTHO05D005313 7.7e-10 70.1 34 88.2
A03p06760 Brassica napus HOM05D001076 ORTHO05D005313 1.9e-08 65.5 34 79.4
A05p25150 Brassica napus HOM05D001076 ORTHO05D005313 1.9e-08 65.5 34 79.4
A08p01120 Brassica napus HOM05D001076 ORTHO05D005313 1.9e-08 65.5 34 79.4
AT5G21160 Arabidopsis thaliana HOM05D001076 ORTHO05D005313 4.2e-08 64.3 34 79.4
BcaB08g36479 Brassica carinata HOM05D001076 ORTHO05D005313 4.2e-08 64.3 34 82.4
BcaC04g19520 Brassica carinata HOM05D001076 ORTHO05D005313 4.2e-08 64.3 35 82.9
A10p18920 Brassica napus HOM05D001076 ORTHO05D005313 9.4e-08 63.2 35 80.0
BraA10t43969Z Brassica rapa HOM05D001076 ORTHO05D005313 9.4e-08 63.2 35 80.0
Carub.0006s1947 Capsella rubella HOM05D001076 ORTHO05D005313 1.6e-07 62.4 34 76.5
BNapus_Darmor_BZH_scaffold_38p01060 Brassica napus HOM05D001076 ORTHO05D005313 4.7e-07 60.8 36 75.0
BraA02t05622Z Brassica rapa HOM05D001076 ORTHO05D005313 4.7e-07 60.8 36 75.0
C07p05070 Brassica napus HOM05D001076 ORTHO05D005313 6.1e-07 60.5 31 80.6
BolC7t40905H Brassica oleracea HOM05D001076 ORTHO05D005313 6.1e-07 60.5 31 80.6
BraA06t26086Z Brassica rapa HOM05D001076 ORTHO05D005313 6.1e-07 60.5 31 80.6
Thhalv10012690m.g Eutrema salsugineum HOM05D001076 ORTHO05D005313 8.0e-07 60.1 34 73.5
AL6G32780 Arabidopsis lyrata HOM05D001076 ORTHO05D005313 1.0e-06 59.7 35 77.1
C09p54900 Brassica napus HOM05D001076 ORTHO05D005313 1.0e-06 59.7 36 80.6
BolC9t58351H Brassica oleracea HOM05D001076 ORTHO05D005313 1.0e-06 59.7 36 80.6
Aa31LG1G13620 Aethionema arabicum HOM05D001076 ORTHO05D005313 2.3e-06 58.5 54 57.4
BcaC03g13841 Brassica carinata HOM05D001076 ORTHO05D005313 2.3e-06 58.5 34 76.5
BolC2t07110H Brassica oleracea HOM05D001076 ORTHO05D005313 2.3e-06 58.5 34 76.5
BcaB05g22768 Brassica carinata HOM05D001076 ORTHO05D005313 3.0e-06 58.2 36 77.8


User provided reference genes

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