Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 4.1e-174 614.8 338 100.0
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 1.1e-166 590.1 338 93.5
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 1.1e-166 590.1 338 94.1
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 2.4e-166 589.0 338 95.9
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 3.4e-165 585.1 338 92.9
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 2.7e-162 575.5 338 94.4
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 2.4e-158 562.4 346 92.5
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 2.4e-158 562.4 338 92.6
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 2.4e-158 562.4 338 92.6
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 3.4e-157 558.5 331 94.9
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 1.7e-156 556.2 347 90.2
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 6.5e-156 554.3 347 89.9
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 1.9e-155 552.7 338 91.1
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 2.7e-154 548.9 331 92.4
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 9.7e-152 540.4 338 88.8
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.7e-151 539.7 338 87.6
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 2.8e-151 538.9 367 85.0
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 6.3e-151 537.7 338 87.0
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 5.3e-150 534.6 338 87.6
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 5.3e-150 534.6 338 87.6
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 5.3e-150 534.6 338 87.0
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 5.3e-150 534.6 339 87.9
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 7.0e-150 534.3 338 87.9
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 9.1e-150 533.9 338 88.2
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.2e-149 533.5 338 87.9
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 7.7e-149 530.8 338 87.9
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 7.7e-149 530.8 338 87.0
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.0e-148 530.4 339 86.4
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 1.7e-148 529.6 338 87.6
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 2.9e-148 528.9 338 87.0
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 3.8e-148 528.5 340 86.2
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 5.0e-148 528.1 338 87.0
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 1.1e-147 526.9 338 85.8
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 2.5e-147 525.8 338 85.5
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 3.2e-147 525.4 338 82.2
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 3.2e-147 525.4 338 85.2
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 7.2e-147 524.2 339 85.0
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 7.2e-147 524.2 350 84.9
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 9.4e-147 523.9 338 84.9
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.2e-146 523.5 338 85.8
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 1.6e-146 523.1 338 85.5
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 4.7e-146 521.5 338 84.9
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 6.1e-146 521.2 338 86.1
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 1.0e-145 520.4 338 85.8
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 1.0e-145 520.4 338 85.2
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 5.2e-145 518.1 338 78.4
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 6.7e-145 517.7 338 84.0
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 2.0e-144 516.2 338 83.1
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 2.6e-144 515.8 338 85.2
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 3.3e-144 515.4 338 84.0
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 3.3e-144 515.4 342 84.5
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 4.4e-144 515.0 338 84.3
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 9.7e-144 513.8 341 84.2
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 9.7e-144 513.8 338 84.0
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 1.3e-143 513.5 339 84.7
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 1.3e-143 513.5 338 85.8
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 6.3e-143 511.1 337 83.4
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 6.3e-143 511.1 337 83.4
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 8.2e-143 510.8 354 82.2
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 1.4e-142 510.0 338 82.5
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.8e-142 509.6 338 84.3
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 4.1e-142 508.4 338 87.3
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 7.0e-142 507.7 339 83.5
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 7.0e-142 507.7 373 79.1
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 1.2e-141 506.9 338 83.7
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 1.2e-141 506.9 338 84.3
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.6e-141 506.5 338 82.2
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 3.5e-141 505.4 338 84.9
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 3.5e-141 505.4 322 86.0
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 5.9e-141 504.6 341 83.9
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 7.7e-141 504.2 338 83.7
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 1.0e-140 503.8 338 84.9
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 2.2e-140 502.7 340 83.5
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 2.9e-140 502.3 339 82.9
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 2.9e-140 502.3 338 83.1
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 2.9e-140 502.3 338 83.7
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 2.9e-140 502.3 338 83.7
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 6.5e-140 501.1 338 83.4
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 6.5e-140 501.1 338 83.4
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 1.5e-139 500.0 341 83.6
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 1.9e-139 499.6 356 79.5
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 1.9e-139 499.6 356 79.5
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 3.6e-138 495.4 331 86.1
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 2.3e-137 492.7 366 77.9
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 3.0e-137 492.3 360 79.2
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 2.0e-136 489.6 338 81.1
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 5.7e-136 488.0 338 80.8
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 7.5e-136 487.6 353 78.8
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 9.8e-136 487.3 338 80.8
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 9.8e-136 487.3 338 80.2
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 2.2e-135 486.1 338 80.5
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 2.2e-135 486.1 322 84.8
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 3.7e-135 485.3 338 76.6
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 6.3e-135 484.6 340 82.6
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.4e-134 483.4 341 76.8
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 9.1e-134 480.7 338 81.7
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 2.7e-133 479.2 516 60.7
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 4.5e-133 478.4 322 83.5
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 1.5e-131 473.4 350 78.6
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 7.2e-131 471.1 378 72.8
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 9.5e-131 470.7 326 81.9
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 9.5e-131 470.7 326 81.9
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.7e-130 469.2 338 79.6
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 4.4e-128 461.8 306 86.6
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 1.4e-126 456.8 338 71.3
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.4e-126 456.8 367 73.6
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.4e-126 456.8 367 73.6
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.8e-126 456.4 338 76.9
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 7.0e-118 427.9 285 83.9
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 9.2e-118 427.6 353 71.7
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 6.2e-114 414.8 335 75.2
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 1.3e-111 407.1 224 87.1
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 3.9e-108 395.6 275 84.4
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.7e-103 380.2 340 70.3
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 3.5e-101 372.5 322 71.4
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 2.5e-99 366.3 321 72.6
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 5.2e-97 358.6 256 85.2
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.1e-94 350.9 338 65.1
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 3.9e-92 342.4 281 71.5
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 8.9e-89 331.3 338 63.3
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 3.5e-85 319.3 383 47.0
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 1.2e-80 304.3 147 95.2
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 2.6e-80 303.1 331 52.3
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 7.6e-64 248.4 183 68.3
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 1.1e-62 244.6 212 74.5
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 3.2e-62 243.0 326 45.1
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 5.5e-62 242.3 165 83.6
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 1.8e-52 210.7 116 85.3
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.4e-43 179.5 82 97.6
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 8.5e-39 165.2 91 89.0
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.1e-33 148.3 91 86.8
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 2.6e-32 143.7 90 84.4
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 3.6e-21 106.7 55 89.1
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.6e-19 100.5 45 100.0
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 3.7e-18 96.7 203 29.1
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.6e-16 91.3 240 28.8
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.5e-14 84.7 64 64.1
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 6.1e-13 79.3 39 89.7
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.9e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.9e-12 75.5 41 90.2
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.8e-10 70.5 128 55.5
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 3.7e-10 70.1 45 73.3
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 6.3e-10 69.3 30 93.3


User provided reference genes

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