Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 5.9e-228 793.9 408 100.0
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 2.3e-216 755.4 414 94.0
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 3.0e-216 755.0 414 94.0
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 4.0e-216 754.6 414 94.0
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 4.0e-216 754.6 414 93.5
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 4.0e-216 754.6 414 93.5
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 2.0e-215 752.3 414 93.2
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 3.3e-215 751.5 414 93.7
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 3.3e-215 751.5 414 93.7
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.3e-214 747.3 414 93.2
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.2e-212 743.0 426 90.4
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.6e-212 742.7 414 92.5
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 5.9e-212 740.7 426 90.1
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 5.9e-212 740.7 426 90.1
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 8.5e-211 736.9 414 91.3
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.0e-203 713.4 414 87.9
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.3e-203 713.0 414 87.9
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 5.4e-197 691.0 416 87.3
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 1.9e-189 666.0 414 82.1
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 1.3e-187 659.8 414 81.2
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 1.5e-186 656.4 414 81.4
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 1.2e-185 653.3 414 80.2
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 1.6e-185 652.9 409 81.2
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 1.6e-185 652.9 414 79.7
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 3.1e-184 648.7 414 80.0
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 8.9e-184 647.1 414 79.2
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 1.2e-183 646.7 414 79.0
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 1.5e-183 646.4 414 80.2
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 1.5e-183 646.4 414 80.2
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.6e-183 645.6 414 78.7
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.8e-183 644.4 414 78.7
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 7.5e-183 644.0 410 80.2
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 1.3e-182 643.3 414 79.7
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 2.2e-182 642.5 414 78.5
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 2.2e-182 642.5 414 78.3
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 8.3e-182 640.6 416 79.6
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 2.4e-181 639.0 414 78.3
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 3.2e-181 638.6 414 79.5
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 4.1e-181 638.3 414 78.7
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 7.0e-181 637.5 413 78.9
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 7.0e-181 637.5 414 78.0
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 2.1e-180 636.0 414 78.5
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 2.1e-180 636.0 414 79.0
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 2.7e-180 635.6 413 78.5
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 2.7e-180 635.6 414 78.3
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 6.0e-180 634.4 414 78.7
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 7.8e-180 634.0 414 79.0
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 1.0e-179 633.6 411 79.1
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 1.7e-179 632.9 418 80.9
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 5.1e-179 631.3 413 78.0
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 5.1e-179 631.3 413 77.5
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 2.5e-178 629.0 411 78.6
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 7.3e-178 627.5 413 77.5
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 2.1e-177 625.9 445 73.5
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 2.8e-177 625.5 411 77.6
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.6e-177 625.2 414 77.1
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 3.6e-177 625.2 409 79.0
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 4.7e-177 624.8 411 78.1
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 6.2e-177 624.4 411 77.6
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 8.1e-177 624.0 409 76.8
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.8e-176 622.9 414 76.3
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.1e-176 622.1 414 76.8
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 8.9e-176 620.5 414 76.3
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 7.5e-175 617.5 413 76.5
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 9.9e-175 617.1 414 76.8
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 1.7e-174 616.3 414 76.3
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 3.7e-174 615.1 414 76.3
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 4.9e-174 614.8 413 75.3
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 4.9e-174 614.8 413 76.0
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 8.3e-174 614.0 414 76.1
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 1.4e-173 613.2 410 75.9
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 1.9e-173 612.8 413 76.8
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 2.4e-173 612.5 413 75.1
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 5.4e-173 611.3 413 76.3
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 9.2e-173 610.5 414 75.6
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 9.2e-173 610.5 414 75.8
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 7.8e-172 607.4 413 76.5
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 3.0e-171 605.5 416 75.5
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.1e-170 603.6 420 74.8
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 1.5e-170 603.2 420 74.3
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 1.2e-169 600.1 415 75.9
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 1.1e-168 597.0 430 72.1
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 4.9e-166 588.2 412 73.8
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 1.1e-165 587.0 410 74.1
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.9e-165 586.3 439 70.6
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.9e-165 586.3 375 79.7
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.9e-165 586.3 371 80.6
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 9.2e-165 583.9 415 73.0
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.2e-164 583.6 415 73.3
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.7e-163 579.7 408 74.0
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 2.1e-161 572.8 413 67.8
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 2.6e-159 565.8 415 71.1
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 3.0e-155 552.4 410 71.2
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.5e-154 550.1 406 71.4
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 2.5e-154 549.3 305 91.5
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 1.7e-150 536.6 414 68.4
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 1.6e-148 530.0 371 74.4
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 3.0e-147 525.8 410 65.1
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 6.7e-147 524.6 479 61.8
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 1.9e-146 523.1 411 69.1
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 9.0e-144 514.2 410 64.4
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 2.1e-140 503.1 323 79.3
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.0e-134 484.2 412 64.3
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.6e-132 476.9 398 61.8
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 6.0e-132 474.9 405 57.3
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 8.7e-131 471.1 412 58.0
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 5.9e-127 458.4 313 78.3
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.9e-126 456.1 282 81.9
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.4e-125 453.8 282 81.6
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 2.3e-123 446.4 296 77.0
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 9.7e-114 414.5 284 77.5
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 9.1e-112 407.9 256 80.9
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 3.3e-106 389.4 292 75.0
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 6.3e-105 385.2 258 73.3
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 6.5e-102 375.2 314 63.4
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 5.5e-101 372.1 285 69.1
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 1.3e-94 350.9 415 46.7
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.0e-90 337.0 238 73.5
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 2.0e-82 310.5 191 81.2
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.1e-80 302.8 199 77.4
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 1.0e-70 271.6 205 70.7
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.4e-67 261.2 173 75.1
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 2.6e-66 256.9 184 71.7
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.9e-64 250.8 193 68.4
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 4.3e-61 239.6 401 36.4
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.2e-59 232.6 126 90.5
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 1.6e-55 221.1 214 54.7
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.5e-55 219.9 161 75.8
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 7.8e-55 218.8 403 33.0
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.0e-54 218.4 139 78.4
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 8.6e-54 215.3 319 35.7
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.8e-52 210.3 199 63.8
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.4e-51 207.2 160 73.1
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.2e-50 204.9 114 92.1
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 9.3e-40 168.7 121 69.4
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 1.2e-34 151.8 408 30.6
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 7.6e-34 149.1 102 72.5
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 5.3e-27 126.3 83 75.9
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.2e-26 125.2 104 58.7
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 5.8e-26 122.9 83 72.3
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 2.9e-25 120.6 115 58.3
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 1.6e-23 114.8 127 58.3
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 6.0e-23 112.8 143 51.0
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 2.5e-21 107.5 146 50.0
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 7.6e-18 95.9 99 54.5
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 2.2e-17 94.4 150 39.3
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.5e-16 90.9 51 84.3
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.2e-16 90.5 72 70.8
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.1e-15 86.3 75 62.7
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 4.8e-12 76.6 54 75.9
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 1.1e-08 65.5 73 47.9
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.9e-08 64.7 38 81.6
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 6.1e-07 59.7 57 52.6
Solyc12g070150.1 Solanum lycopersicum HOM05D004528 ORTHO05D005815 8.8e-06 55.8 57 52.6


User provided reference genes

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