Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 2.9e-188 661.8 334 100.0
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 4.6e-178 627.9 336 94.9
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 6.4e-172 607.4 334 91.3
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 1.2e-170 603.2 334 90.4
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 3.5e-170 601.7 334 92.2
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 5.1e-169 597.8 331 91.8
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 2.8e-167 592.0 324 92.0
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 2.4e-166 589.0 335 89.6
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 6.4e-164 580.9 328 90.5
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 6.4e-164 580.9 328 90.5
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 5.4e-163 577.8 339 89.1
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 6.9e-158 560.8 335 85.1
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 6.0e-154 547.7 332 83.1
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 1.5e-141 506.5 335 75.5
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 2.6e-141 505.8 334 75.7
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 2.5e-139 499.2 333 75.1
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 1.3e-137 493.4 335 74.3
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 1.8e-137 493.0 332 75.6
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 6.7e-137 491.1 332 75.3
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 3.7e-135 485.3 341 73.6
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 6.3e-135 484.6 332 72.3
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 1.4e-134 483.4 334 73.1
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 4.1e-134 481.9 335 71.9
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 5.3e-134 481.5 334 72.8
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 5.3e-134 481.5 334 72.2
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 6.9e-134 481.1 335 72.8
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.0e-133 479.6 332 71.7
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 2.6e-133 479.2 334 72.8
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 4.5e-133 478.4 334 72.2
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 1.7e-132 476.5 334 71.6
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 2.2e-132 476.1 334 71.9
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 3.8e-132 475.3 335 71.6
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 6.5e-132 474.6 334 71.9
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 8.4e-132 474.2 334 71.9
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 8.4e-132 474.2 332 70.5
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 1.9e-131 473.0 334 70.4
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 5.5e-131 471.5 339 72.0
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 7.2e-131 471.1 334 70.7
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 7.2e-131 471.1 325 73.2
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 9.3e-131 470.7 334 72.8
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 1.2e-130 470.3 332 72.3
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 2.7e-130 469.2 333 74.8
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 1.0e-129 467.2 334 70.1
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 1.0e-129 467.2 334 69.8
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 2.3e-129 466.1 335 71.0
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 3.9e-129 465.3 338 70.7
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 6.7e-129 464.5 325 71.7
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 8.7e-129 464.2 334 70.1
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 8.7e-129 464.2 336 70.5
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 2.5e-128 462.6 340 70.3
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 2.5e-128 462.6 334 69.5
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.3e-128 462.2 339 70.8
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 7.4e-128 461.1 319 71.5
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 7.4e-128 461.1 334 71.6
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 9.7e-128 460.7 336 69.6
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 9.7e-128 460.7 340 69.7
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 9.7e-128 460.7 340 69.7
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.8e-127 459.1 336 69.9
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 3.7e-127 458.8 336 69.9
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 3.7e-127 458.8 335 68.7
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 8.2e-127 457.6 338 68.9
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 3.1e-126 455.7 334 68.9
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 4.1e-126 455.3 337 69.7
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 4.1e-126 455.3 336 69.6
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 4.1e-126 455.3 336 69.3
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.2e-125 453.8 334 68.0
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 1.3e-124 450.3 334 68.0
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.7e-124 449.9 334 70.4
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.2e-124 449.5 334 67.4
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 8.5e-124 447.6 336 68.2
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.4e-123 446.8 332 68.7
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 7.2e-123 444.5 336 69.0
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 2.1e-122 443.0 336 67.6
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 4.6e-122 441.8 336 69.3
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 6.1e-122 441.4 338 67.5
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.8e-121 439.9 338 67.2
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 6.7e-121 438.0 332 67.5
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 1.1e-120 437.2 342 66.7
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 4.3e-120 435.3 356 63.5
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 1.7e-119 433.3 336 67.6
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 2.2e-119 433.0 338 65.7
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 3.7e-119 432.2 338 65.1
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 4.8e-119 431.8 342 67.5
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 6.3e-119 431.4 339 65.8
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 6.3e-119 431.4 334 65.3
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 1.1e-118 430.6 380 60.0
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 2.4e-118 429.5 335 66.3
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 3.1e-118 429.1 333 67.9
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 4.1e-118 428.7 338 65.1
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.4e-117 425.6 334 65.0
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 1.0e-116 424.1 340 66.2
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 8.5e-116 421.0 341 64.2
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 1.1e-115 420.6 347 66.0
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.4e-115 420.2 332 65.7
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 9.4e-115 417.5 341 66.0
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 9.4e-115 417.5 340 63.8
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 2.0e-112 409.8 355 61.7
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 2.0e-112 409.8 355 61.7
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 3.3e-112 409.1 339 63.1
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 8.2e-111 404.4 336 62.2
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 4.1e-110 402.1 341 62.5
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.1e-107 394.0 362 61.3
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 2.7e-106 389.4 353 60.9
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 4.7e-106 388.7 353 60.3
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 1.0e-105 387.5 263 74.5
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 1.5e-104 383.6 333 61.9
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.3e-103 380.6 338 59.2
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 2.4e-102 376.3 344 58.4
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 2.7e-101 372.9 357 60.2
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 1.3e-100 370.5 342 58.5
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 8.5e-100 367.9 359 59.1
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 4.2e-99 365.5 283 66.8
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 3.6e-98 362.5 333 58.0
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 2.0e-96 356.7 336 55.7
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 1.4e-94 350.5 320 59.7
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 3.7e-87 325.9 323 57.6
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.2e-80 304.3 230 64.8
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 4.0e-73 279.3 360 48.1
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 4.1e-70 269.2 246 60.6
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 3.9e-68 262.7 212 63.2
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 6.6e-68 261.9 256 56.2
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.1e-65 254.6 267 56.9
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 1.3e-63 247.7 189 67.2
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 3.2e-62 243.0 360 44.7
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.7e-61 240.0 362 44.2
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 5.6e-59 232.3 190 62.6
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 3.6e-58 229.6 383 41.5
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 1.5e-56 224.2 363 42.7
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.5e-51 207.6 217 52.5
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 8.4e-47 191.8 223 48.9
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 1.4e-46 191.0 355 38.9
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 3.6e-42 176.4 175 49.1
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 1.9e-38 164.1 370 35.1
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 2.1e-34 150.6 359 36.5
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 5.3e-33 146.0 375 32.5
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 3.3e-27 126.7 140 50.7
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 4.8e-26 122.9 118 55.9
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 4.5e-24 116.3 148 45.9
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 7.6e-24 115.5 353 30.6
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 2.2e-23 114.0 92 59.8
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.4e-22 111.3 88 63.6
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 1.4e-22 111.3 106 53.8
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 7.1e-22 109.0 92 57.6
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 1.5e-19 101.3 127 47.2
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 9.6e-19 98.6 103 53.4
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 5.9e-16 89.4 55 74.5
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 7.6e-16 89.0 60 71.7
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 1.7e-15 87.8 72 55.6
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 3.8e-15 86.7 81 59.3
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 1.1e-14 85.1 138 38.4
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 7.2e-14 82.4 40 92.5
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 8.7e-12 75.5 317 27.8
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.6e-10 71.2 162 34.6
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 2.6e-08 63.9 168 28.6
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 4.5e-08 63.2 43 69.8
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 8.5e-07 58.9 53 49.1


User provided reference genes

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