Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 3.1e-120 435.3 237 100.0
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 5.6e-114 414.5 237 95.4
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.1e-112 410.2 237 94.5
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 5.3e-112 407.9 237 93.7
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 4.5e-111 404.8 237 92.8
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 4.6e-108 394.8 237 89.9
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 5.3e-104 381.3 237 88.6
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 5.3e-104 381.3 237 88.6
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 4.5e-103 378.3 237 88.2
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 4.5e-103 378.3 237 88.2
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 2.5e-93 345.9 210 90.0
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.5e-93 345.9 242 81.4
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.0e-91 340.5 242 79.8
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.0e-90 336.3 246 77.2
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 1.7e-86 323.2 207 83.6
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 5.7e-82 308.1 242 69.0
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 7.4e-82 307.8 243 70.4
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 1.1e-80 303.9 241 69.3
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 7.0e-80 301.2 241 69.7
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 7.0e-80 301.2 243 70.4
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 9.1e-80 300.8 239 69.0
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.5e-79 300.1 241 69.7
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 1.5e-79 300.1 233 67.4
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 3.5e-79 298.9 244 66.8
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 3.5e-79 298.9 239 69.9
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 7.7e-79 297.7 242 68.6
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.7e-78 296.6 205 78.0
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 3.8e-78 295.4 244 68.9
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 3.8e-78 295.4 239 69.0
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 3.8e-78 295.4 248 64.5
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 6.5e-78 294.7 245 66.5
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.1e-77 293.9 244 67.6
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 1.5e-77 293.5 204 77.9
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.9e-77 293.1 245 66.9
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 2.5e-77 292.7 245 66.5
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 2.5e-77 292.7 245 67.3
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 3.2e-77 292.4 244 68.0
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 5.5e-77 291.6 245 66.9
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 7.2e-77 291.2 205 77.6
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 1.2e-76 290.4 236 68.2
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 2.1e-76 289.7 211 73.0
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 2.7e-76 289.3 245 66.9
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 4.7e-76 288.5 208 73.1
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 6.1e-76 288.1 204 77.0
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 6.1e-76 288.1 237 68.4
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 8.0e-76 287.7 205 75.1
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.0e-75 287.3 207 73.9
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.4e-75 287.0 207 73.4
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 3.0e-75 285.8 205 75.1
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 3.9e-75 285.4 204 75.0
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 3.9e-75 285.4 237 67.9
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.9e-75 285.4 237 67.5
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.9e-75 285.4 237 67.9
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.9e-75 285.4 245 65.7
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 3.9e-75 285.4 242 64.5
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 5.2e-75 285.0 244 66.8
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 6.7e-75 284.6 244 63.9
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 6.7e-75 284.6 205 75.1
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 6.7e-75 284.6 240 65.4
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 1.5e-74 283.5 230 67.0
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 1.5e-74 283.5 205 74.1
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 2.0e-74 283.1 207 74.4
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 2.0e-74 283.1 204 74.0
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.6e-74 282.7 207 74.4
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 3.3e-74 282.3 208 73.1
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.3e-74 282.3 237 67.5
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 4.4e-74 282.0 208 72.6
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 5.7e-74 281.6 244 64.8
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 5.7e-74 281.6 208 72.1
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 5.7e-74 281.6 244 64.8
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 1.3e-73 280.4 229 64.2
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 1.3e-73 280.4 242 64.9
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.3e-73 280.4 245 64.9
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 2.8e-73 279.3 207 72.5
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 3.7e-73 278.9 206 73.8
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 4.8e-73 278.5 208 71.2
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 1.4e-72 276.9 208 71.2
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 1.8e-72 276.6 208 72.1
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 1.8e-72 276.6 206 73.3
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 1.8e-72 276.6 242 64.0
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 3.1e-72 275.8 241 64.7
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.1e-72 275.8 245 62.9
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 3.1e-72 275.8 245 63.3
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 4.1e-72 275.4 242 64.9
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 5.3e-72 275.0 205 72.7
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 9.1e-72 274.2 227 67.0
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 9.1e-72 274.2 197 73.1
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.2e-71 273.9 189 77.2
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 1.6e-71 273.5 226 66.8
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.6e-71 273.5 244 63.5
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 2.0e-71 273.1 198 73.7
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 2.0e-71 273.1 207 71.5
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 2.6e-71 272.7 207 71.0
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 1.0e-70 270.8 245 63.7
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 1.0e-70 270.8 208 68.8
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.7e-70 270.0 242 64.5
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 2.2e-70 269.6 205 72.7
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 2.2e-70 269.6 207 68.6
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 2.9e-70 269.2 183 78.7
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 2.9e-70 269.2 208 72.1
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 3.8e-70 268.9 213 68.5
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 1.5e-69 266.9 205 70.2
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 1.9e-69 266.5 209 69.4
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 2.5e-69 266.2 210 68.6
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 3.2e-69 265.8 207 69.1
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 3.2e-69 265.8 207 69.1
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 3.2e-69 265.8 207 69.6
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.2e-69 265.8 225 63.6
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 7.2e-69 264.6 197 72.6
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 9.4e-69 264.2 207 68.6
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 2.1e-68 263.1 200 70.5
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 3.6e-68 262.3 210 67.1
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 8.0e-68 261.2 201 70.6
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 1.8e-67 260.0 201 70.1
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 1.8e-67 260.0 206 67.5
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 3.4e-66 255.8 213 66.7
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 7.5e-66 254.6 230 62.2
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 9.7e-66 254.2 213 67.1
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 1.7e-65 253.4 207 64.7
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 2.4e-64 249.6 199 66.3
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 2.4e-64 249.6 206 67.5
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 9.1e-64 247.7 159 84.3
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 1.2e-63 247.3 219 61.6
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 1.9e-61 240.0 223 58.3
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 5.5e-61 238.4 199 64.8
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.6e-58 229.6 176 68.2
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 5.2e-51 205.3 218 57.8
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 1.7e-49 200.3 165 68.5
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 1.6e-47 193.7 231 50.6
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 2.3e-46 189.9 188 56.9
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 2.3e-38 163.3 135 67.4
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 9.5e-37 157.9 112 72.3
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 1.8e-35 153.7 174 49.4
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 5.8e-34 148.7 218 47.7
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 1.9e-32 143.7 171 46.8
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 8.6e-30 134.8 114 64.0
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 8.9e-27 124.8 188 41.0
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 1.7e-25 120.6 115 55.7
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 2.1e-23 113.6 86 66.3
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.6e-18 96.7 90 64.4
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 6.4e-17 92.0 84 63.1
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 1.4e-16 90.9 196 32.7
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 1.1e-13 81.3 188 30.9
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 5.8e-10 68.9 58 63.8
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.6e-07 60.8 57 61.4
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 2.3e-06 57.0 74 51.4


User provided reference genes

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