Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 7.2e-292 1006.5 512 100.0
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 8.1e-267 923.3 512 91.4
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 2.0e-265 918.7 512 90.8
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 9.2e-263 909.8 512 90.0
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 6.6e-261 903.7 512 90.6
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 3.3e-260 901.4 512 89.3
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 5.6e-260 900.6 512 89.1
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 2.1e-259 898.7 512 88.9
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 9.9e-257 889.8 512 87.5
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 1.6e-254 882.5 512 89.3
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 6.0e-254 880.6 512 88.9
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 1.5e-249 865.9 512 87.7
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 1.5e-249 865.9 512 87.7
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 3.1e-234 815.1 516 80.8
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 1.2e-217 760.0 513 79.5
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 2.0e-217 759.2 518 74.5
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 1.1e-196 690.3 458 75.1
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 1.5e-196 689.9 458 75.1
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 3.7e-195 685.3 466 73.2
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 1.4e-194 683.3 501 70.7
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 6.5e-192 674.5 445 74.4
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 1.5e-191 673.3 464 73.3
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 7.2e-191 671.0 451 73.2
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 4.7e-190 668.3 441 72.3
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 4.7e-190 668.3 493 68.6
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 1.4e-189 666.8 441 72.8
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 6.8e-189 664.5 453 71.7
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 1.2e-188 663.7 438 75.8
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 1.5e-188 663.3 512 67.0
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 2.0e-188 662.9 516 66.9
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 7.5e-188 661.0 468 71.2
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 9.8e-188 660.6 452 71.7
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 1.7e-187 659.8 452 72.1
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 2.8e-187 659.1 461 71.6
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 6.3e-187 657.9 437 74.1
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 1.4e-186 656.8 526 66.2
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 3.1e-186 655.6 467 70.2
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 3.1e-186 655.6 493 68.0
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 9.1e-186 654.1 481 69.6
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 9.1e-186 654.1 509 66.6
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 1.6e-185 653.3 475 70.1
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 2.0e-185 652.9 510 66.9
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 2.0e-185 652.9 440 73.6
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 2.7e-185 652.5 468 69.9
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 2.7e-185 652.5 468 70.3
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 3.5e-185 652.1 481 68.4
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 4.5e-185 651.7 510 67.1
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 5.9e-185 651.4 435 75.4
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 7.7e-185 651.0 452 71.7
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 1.0e-184 650.6 496 67.7
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 2.2e-184 649.4 467 69.0
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 1.1e-183 647.1 483 68.7
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 1.5e-183 646.7 466 68.7
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 1.9e-183 646.4 430 74.9
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.5e-183 646.0 487 67.8
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 5.5e-183 644.8 476 68.7
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 1.2e-182 643.7 447 71.4
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 2.1e-182 642.9 430 76.0
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 2.7e-182 642.5 518 66.2
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 4.7e-182 641.7 466 70.8
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 6.1e-182 641.3 500 66.4
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 6.1e-182 641.3 463 69.3
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 8.0e-182 641.0 466 69.1
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 8.0e-182 641.0 507 65.5
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 8.0e-182 641.0 471 68.2
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 1.4e-181 640.2 465 69.0
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 1.4e-181 640.2 465 69.0
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 1.4e-181 640.2 462 69.5
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 1.8e-181 639.8 466 68.7
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 3.0e-181 639.0 466 69.3
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 5.2e-181 638.3 476 68.5
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 8.8e-181 637.5 469 68.7
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.5e-180 636.7 467 69.0
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 2.6e-180 636.0 499 66.5
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 4.4e-180 635.2 470 68.1
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 5.7e-180 634.8 502 65.5
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 7.5e-180 634.4 512 65.0
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 7.5e-180 634.4 470 67.9
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 4.9e-179 631.7 489 67.9
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 1.8e-178 629.8 427 72.6
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 2.4e-178 629.4 484 66.5
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 4.1e-178 628.6 449 69.5
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 5.4e-178 628.2 527 63.2
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 7.0e-178 627.9 498 65.7
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 7.0e-178 627.9 465 67.5
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 3.8e-176 622.1 474 67.3
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 1.1e-175 620.5 468 68.2
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 1.1e-175 620.5 440 69.5
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 1.1e-175 620.5 442 69.0
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 5.6e-175 618.2 443 69.1
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 9.5e-175 617.5 435 70.1
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.2e-174 617.1 443 68.4
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 2.1e-174 616.3 443 70.9
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 2.8e-174 615.9 442 68.6
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 2.8e-174 615.9 449 67.9
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.4e-173 613.6 439 69.9
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.8e-173 613.2 438 70.3
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 3.4e-172 609.0 457 66.5
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 2.2e-171 606.3 537 59.2
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 7.0e-170 601.3 459 66.9
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 1.6e-169 600.1 433 70.2
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 1.6e-169 600.1 456 66.4
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 3.9e-168 595.5 496 63.7
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 3.3e-167 592.4 445 66.7
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 5.2e-165 585.1 434 66.4
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 5.8e-164 581.6 491 61.1
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 7.3e-159 564.7 442 65.4
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 2.8e-158 562.8 437 63.2
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 3.6e-158 562.4 480 60.2
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 7.6e-148 528.1 457 58.2
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 3.8e-139 499.2 374 65.8
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 6.4e-139 498.4 435 58.6
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 6.6e-136 488.4 464 56.5
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 4.3e-135 485.7 317 74.1
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 3.6e-134 482.6 500 50.6
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 1.2e-129 467.6 454 56.2
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 6.0e-129 465.3 455 56.3
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 3.9e-128 462.6 485 50.7
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 2.4e-125 453.4 423 58.2
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 1.0e-115 421.4 268 84.0
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 6.9e-109 398.7 396 58.8
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 4.5e-108 396.0 461 49.9
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 3.6e-97 359.8 240 71.2
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 2.5e-82 310.5 429 39.9
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 2.3e-80 303.9 478 44.6
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 6.7e-80 302.4 290 61.0
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 3.3e-79 300.1 284 55.6
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 4.4e-79 299.7 427 45.7
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 7.8e-60 235.7 174 66.1
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 1.3e-59 235.0 282 44.0
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 3.8e-59 233.4 451 33.3
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.0e-55 221.1 179 64.8
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 1.5e-50 204.9 390 36.7
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 2.7e-44 184.1 164 57.3
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 1.4e-40 171.8 132 70.5
FAN09G2876 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.1e-29 135.6 96 63.5
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 3.9e-27 127.1 92 67.4
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 6.6e-27 126.3 119 60.5
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 4.4e-23 113.6 146 46.6
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 4.2e-21 107.1 64 78.1
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 3.0e-19 100.9 57 84.2
BolC1t05887H Brassica oleracea HOM05D005235 ORTHO05D014124 1.9e-18 98.2 73 79.5
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 5.6e-18 96.7 72 65.3
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 2.6e-15 87.8 49 83.7
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 2.6e-15 87.8 49 83.7
Nn1g04561 Nelumbo nucifera HOM05D005235 ORTHO05D038945 2.6e-15 87.8 86 54.7
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 2.1e-12 78.2 64 60.9


User provided reference genes

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