Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 7.9e-71 270.4 142 100.0
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.5e-58 229.6 136 86.8
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 5.9e-58 227.6 138 86.2
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 3.2e-56 221.9 139 82.0
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 5.5e-56 221.1 138 83.3
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 1.2e-55 219.9 136 83.8
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 4.6e-55 218.0 144 80.6
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 3.9e-54 214.9 139 82.0
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 6.7e-54 214.2 142 78.9
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 6.7e-54 214.2 139 82.0
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 6.7e-54 214.2 139 82.0
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 2.5e-53 212.2 137 81.0
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 2.5e-53 212.2 143 82.5
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 9.7e-53 210.3 147 76.2
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 2.2e-52 209.1 144 80.6
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 8.2e-52 207.2 137 80.3
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 2.5e-48 195.7 146 73.3
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 3.6e-47 191.8 140 74.3
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 6.1e-47 191.0 139 74.1
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.0e-46 190.3 138 74.6
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 3.9e-46 188.3 139 74.1
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 3.9e-46 188.3 139 74.1
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 3.9e-46 188.3 139 74.1
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 9.7e-45 183.7 144 68.8
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 1.7e-44 183.0 143 69.9
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 3.7e-44 181.8 140 68.6
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 4.8e-44 181.4 135 71.9
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 4.1e-43 178.3 138 68.1
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 4.1e-43 178.3 138 68.1
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-40 170.2 133 70.7
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 3.7e-36 155.2 123 69.9
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 4.5e-34 148.3 135 59.3
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 2.9e-33 145.6 133 57.1
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 5.0e-33 144.8 119 60.5
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 5.0e-33 144.8 135 59.3
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 8.5e-33 144.1 140 57.9
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 1.1e-32 143.7 137 56.2
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.1e-32 143.7 139 56.8
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 2.5e-32 142.5 119 61.3
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.5e-32 142.5 153 52.9
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 3.2e-32 142.1 137 56.9
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 3.2e-32 142.1 143 58.0
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 4.2e-32 141.7 127 60.6
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.2e-31 140.2 134 56.7
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.6e-31 139.8 136 55.9
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 2.1e-31 139.4 142 57.7
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.7e-31 139.0 116 62.1
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 3.6e-31 138.7 136 55.9
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 1.0e-30 137.1 138 54.3
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 2.3e-30 136.0 136 55.1
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 2.3e-30 136.0 129 55.8
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 5.2e-30 134.8 140 52.9
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 5.2e-30 134.8 141 53.2
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 6.7e-30 134.4 142 54.2
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 6.7e-30 134.4 120 58.3
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 6.7e-30 134.4 149 50.3
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 8.8e-30 134.0 144 57.6
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 1.2e-29 133.7 146 52.7
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.2e-29 133.7 134 53.0
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 2.0e-29 132.9 143 54.5
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 2.0e-29 132.9 144 56.9
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 7.5e-29 131.0 133 53.4
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 9.7e-29 130.6 130 53.8
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 9.7e-29 130.6 142 51.4
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 1.3e-28 130.2 138 51.4
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 1.7e-28 129.8 152 46.1
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.7e-28 129.8 135 53.3
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 2.8e-28 129.0 139 56.8
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 6.3e-28 127.9 134 51.5
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 6.3e-28 127.9 139 54.7
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 8.2e-28 127.5 120 55.0
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 1.1e-27 127.1 126 53.2
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 1.4e-27 126.7 139 54.0
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.4e-27 126.7 134 55.2
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.4e-27 126.7 137 51.1
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 1.8e-27 126.3 147 52.4
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.4e-27 125.9 142 52.8
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.4e-27 125.9 119 55.5
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 3.1e-27 125.6 139 54.0
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 5.3e-27 124.8 137 54.0
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 7.0e-27 124.4 145 52.4
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 9.1e-27 124.0 132 52.3
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 9.1e-27 124.0 138 51.4
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 1.2e-26 123.6 137 51.8
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 4.5e-26 121.7 146 50.7
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 5.9e-26 121.3 89 67.4
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 7.7e-26 120.9 158 46.8
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 7.7e-26 120.9 130 53.1
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 1.0e-25 120.6 134 50.0
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 1.0e-25 120.6 138 50.7
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.3e-25 120.2 141 51.1
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 1.7e-25 119.8 137 49.6
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 2.2e-25 119.4 137 50.4
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 2.9e-25 119.0 89 64.0
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 6.5e-25 117.9 136 50.7
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 8.5e-25 117.5 138 47.1
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 1.5e-24 116.7 148 50.0
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 2.5e-24 115.9 92 63.0
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 4.2e-24 115.2 138 52.9
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 5.5e-24 114.8 92 62.0
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 5.5e-24 114.8 117 54.7
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 7.2e-24 114.4 89 62.9
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 9.4e-24 114.0 152 47.4
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 1.2e-23 113.6 133 49.6
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.6e-23 113.2 142 50.0
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 1.6e-23 113.2 132 48.5
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 2.7e-23 112.5 159 47.8
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 4.7e-23 111.7 160 43.8
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 8.0e-23 110.9 142 46.5
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.0e-22 110.5 136 47.1
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 2.3e-22 109.4 129 45.0
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 4.0e-22 108.6 139 46.8
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 5.2e-22 108.2 119 46.2
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 8.8e-22 107.5 149 45.6
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 4.4e-21 105.1 134 47.0
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 5.7e-21 104.8 81 60.5
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 7.5e-21 104.4 64 82.8
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 7.5e-21 104.4 136 44.1
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.3e-20 103.6 75 65.3
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 3.7e-20 102.1 141 43.3
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 4.8e-20 101.7 93 54.8
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 4.8e-20 101.7 92 55.4
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 1.8e-19 99.8 137 47.4
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 1.8e-19 99.8 141 42.6
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 3.1e-19 99.0 99 48.5
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 7.0e-19 97.8 118 48.3
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 7.0e-19 97.8 134 43.3
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 1.6e-18 96.7 149 40.9
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 2.0e-18 96.3 149 42.3
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 3.5e-18 95.5 133 42.9
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 3.5e-18 95.5 133 42.9
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 7.7e-18 94.4 88 53.4
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 2.9e-17 92.4 133 39.8
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 6.5e-17 91.3 67 64.2
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 6.5e-17 91.3 133 42.1
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 1.5e-16 90.1 117 46.2
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.5e-16 90.1 94 51.1
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 1.5e-16 90.1 107 46.7
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 3.6e-15 85.5 129 41.9
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 8.0e-15 84.3 120 40.0
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 8.0e-15 84.3 144 41.0
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 7.5e-13 77.8 138 40.6
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 1.4e-11 73.6 89 42.7
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 7.0e-11 71.2 52 65.4
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 9.2e-11 70.9 113 38.1
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 1.2e-10 70.5 96 44.8
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.3e-09 67.0 134 35.8
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 2.3e-09 66.2 87 40.2
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 8.6e-09 64.3 101 45.5
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 1.5e-08 63.5 90 42.2
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.9e-08 63.2 63 57.1
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 7.3e-08 61.2 69 47.8
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 3.6e-07 58.9 42 66.7
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.0e-06 57.4 41 68.3
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 1.4e-06 57.0 88 40.9


User provided reference genes

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