Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g00740 Schrenkiella parvula HOM05D003034 ORTHO05D372034 2.6e-151 538.9 310 100.0
Sp5g32360 Schrenkiella parvula HOM05D003034 ORTHO05D003815 6.8e-51 205.3 184 70.1
BcaNung04773 Brassica carinata HOM05D003034 ORTHO05D003815 2.9e-49 199.9 185 67.6
BcaC08g47218 Brassica carinata HOM05D003034 ORTHO05D003815 5.4e-48 195.7 184 67.4
A07p42740 Brassica napus HOM05D003034 ORTHO05D003815 5.4e-48 195.7 184 66.8
BolC6t40155H Brassica oleracea HOM05D003034 ORTHO05D003815 5.4e-48 195.7 184 67.4
BraA07t31796Z Brassica rapa HOM05D003034 ORTHO05D003815 5.4e-48 195.7 184 67.4
Thhalv10018295m.g Eutrema salsugineum HOM05D003034 ORTHO05D003815 2.7e-47 193.4 184 68.5
C06p51340 Brassica napus HOM05D003034 ORTHO05D003815 6.0e-47 192.2 184 66.8
AL2G37350 Arabidopsis lyrata HOM05D003034 ORTHO05D003815 5.6e-45 185.7 186 65.1
AT1G77180 Arabidopsis thaliana HOM05D003034 ORTHO05D003815 9.5e-45 184.9 185 63.8
CARHR070650 Cardamine hirsuta HOM05D003034 ORTHO05D003815 1.6e-44 184.1 184 63.6
Carub.0002s2406 Capsella rubella HOM05D003034 ORTHO05D003815 1.1e-43 181.4 184 64.7
Aa31LG4G7190 Aethionema arabicum HOM05D003034 ORTHO05D003815 8.9e-43 178.3 187 63.6
BcaB05g25024 Brassica carinata HOM05D003034 ORTHO05D003815 8.9e-43 178.3 176 63.6
THA.LOC104814568 Tarenaya hassleriana HOM05D003034 ORTHO05D003815 3.7e-41 172.9 186 60.8
Atru.chr3.2836 Acer truncatum HOM05D003034 ORTHO05D003815 6.4e-41 172.2 187 58.3
Os02g0759800 Oryza sativa ssp. japonica HOM05D003034 ORTHO05D003815 8.3e-41 171.8 186 54.8
Atru.chr7.1439 Acer truncatum HOM05D003034 ORTHO05D003815 1.4e-40 171.0 187 57.8
arahy.Tifrunner.gnm1.ann1.SJ5F17 Arachis hypogaea HOM05D003034 ORTHO05D003815 4.1e-40 169.5 183 55.7
CANSAT56G3645 Cannabis sativa HOM05D003034 ORTHO05D003815 4.1e-40 169.5 186 58.6
Dinv41659 Davidia involucrata HOM05D003034 ORTHO05D003815 4.1e-40 169.5 188 58.5
arahy.Tifrunner.gnm1.ann1.FQ27XI Arachis hypogaea HOM05D003034 ORTHO05D003815 1.2e-39 167.9 183 55.2
Ciclev10011323m.g Citrus clementina HOM05D003034 ORTHO05D003815 1.6e-39 167.5 188 55.9
Cc06_g10290 Coffea canephora HOM05D003034 ORTHO05D003815 1.6e-39 167.5 185 56.2
Zm00001eb193840 Zea mays HOM05D003034 ORTHO05D003815 2.1e-39 167.2 186 55.4
Eucgr.C03783 Eucalyptus grandis HOM05D003034 ORTHO05D003815 3.5e-39 166.4 188 56.4
Cpa.g.sc80.4 Carica papaya HOM05D003034 ORTHO05D003815 6.0e-39 165.6 187 56.7
Manes.16G110600 Manihot esculenta HOM05D003034 ORTHO05D003815 6.0e-39 165.6 187 58.3
Manes.03G025400 Manihot esculenta HOM05D003034 ORTHO05D003815 7.8e-39 165.2 187 57.2
CsaV3_2G002010 Cucumis sativus L. HOM05D003034 ORTHO05D003815 1.3e-38 164.5 186 57.5
arahy.Tifrunner.gnm1.ann1.H9HV5G Arachis hypogaea HOM05D003034 ORTHO05D003815 1.7e-38 164.1 183 54.6
Dinv36700 Davidia involucrata HOM05D003034 ORTHO05D003815 1.7e-38 164.1 187 57.2
Gohir.A06G066400 Gossypium hirsutum HOM05D003034 ORTHO05D003815 1.7e-38 164.1 186 57.0
PGR102G1252 Punica granatum HOM05D003034 ORTHO05D003815 1.7e-38 164.1 189 57.7
TWI63G1404 Tripterygium wilfordii HOM05D003034 ORTHO05D003815 1.7e-38 164.1 187 56.7
MELO3C004580.2 Cucumis melo HOM05D003034 ORTHO05D003815 2.3e-38 163.7 186 57.5
Psat6g027040 Pisum sativum HOM05D003034 ORTHO05D003815 2.3e-38 163.7 184 56.5
Sed0020635 Sechium edule HOM05D003034 ORTHO05D003815 2.3e-38 163.7 186 57.5
arahy.Tifrunner.gnm1.ann1.Q11F98 Arachis hypogaea HOM05D003034 ORTHO05D003815 3.0e-38 163.3 183 54.1
CsaV3_2G008750 Cucumis sativus L. HOM05D003034 ORTHO05D003815 3.0e-38 163.3 186 57.0
Gohir.D06G064900 Gossypium hirsutum HOM05D003034 ORTHO05D003815 3.0e-38 163.3 186 56.5
Gorai.010G076000 Gossypium raimondii HOM05D003034 ORTHO05D003815 3.0e-38 163.3 186 56.5
MELO3C003973.2 Cucumis melo HOM05D003034 ORTHO05D003815 3.9e-38 162.9 188 56.9
Potri.018G086100 Populus trichocarpa HOM05D003034 ORTHO05D003815 3.9e-38 162.9 187 56.1
Sabra18G0074400 Salix brachista HOM05D003034 ORTHO05D003815 3.9e-38 162.9 187 56.1
Glyma.16G077700 Glycine max HOM05D003034 ORTHO05D003815 5.0e-38 162.5 183 56.8
Phvul.004G176500 Phaseolus vulgaris HOM05D003034 ORTHO05D003815 5.0e-38 162.5 183 56.8
Duzib150G0860 Durio zibethinus HOM05D003034 ORTHO05D003815 8.6e-38 161.8 186 55.4
Lalb_Chr14g0371801 Lupinus albus HOM05D003034 ORTHO05D003815 8.6e-38 161.8 183 56.8
Thecc.09G102800 Theobroma cacao HOM05D003034 ORTHO05D003815 8.6e-38 161.8 186 55.9
TPR.G26332 Trifolium pratense HOM05D003034 ORTHO05D003815 8.6e-38 161.8 184 56.0
Medtr2g030450 Medicago truncatula HOM05D003034 ORTHO05D003815 1.1e-37 161.4 184 56.0
Glyma.01G008600 Glycine max HOM05D003034 ORTHO05D003815 1.9e-37 160.6 183 55.7
Lj3g0026495 Lotus japonicus HOM05D003034 ORTHO05D003815 1.9e-37 160.6 183 56.3
Lalb_Chr14g0364221 Lupinus albus HOM05D003034 ORTHO05D003815 1.9e-37 160.6 183 56.3
Ca_00851_v3 Cicer arietinum L. HOM05D003034 ORTHO05D003815 2.5e-37 160.2 184 55.4
COL.COLO4_34776 Corchorus olitorius HOM05D003034 ORTHO05D003815 2.5e-37 160.2 186 55.9
Hma1.2p1_0155F.1_g068240 Hydrangea macrophylla HOM05D003034 ORTHO05D003815 2.5e-37 160.2 187 55.1
Potri.006G163700 Populus trichocarpa HOM05D003034 ORTHO05D003815 2.5e-37 160.2 189 56.1
Ca_11222_v3 Cicer arietinum L. HOM05D003034 ORTHO05D003815 3.3e-37 159.8 184 55.4
HPP92_020241 Vanilla planifolia HOM05D003034 ORTHO05D003815 3.3e-37 159.8 187 55.1
VMungo0464G1299 Vigna mungo HOM05D003034 ORTHO05D003815 3.3e-37 159.8 183 55.7
Ah.13g075360 Amaranthus hybridus HOM05D003034 ORTHO05D003815 4.3e-37 159.5 185 55.7
MSTRG.27345 Avicennia marina HOM05D003034 ORTHO05D003815 4.3e-37 159.5 187 55.1
HanXRQChr08g0207631 Helianthus annuus HOM05D003034 ORTHO05D003815 4.3e-37 159.5 188 54.3
CSS0003359 Camellia sinensis var. sinensis HOM05D003034 ORTHO05D003815 5.6e-37 159.1 187 55.6
CSS0030998 Camellia sinensis var. sinensis HOM05D003034 ORTHO05D003815 5.6e-37 159.1 187 55.6
Lj3g0024359 Lotus japonicus HOM05D003034 ORTHO05D003815 5.6e-37 159.1 183 55.7
MBI01_g18395_MAGBIO Magnolia biondii HOM05D003034 ORTHO05D003815 5.6e-37 159.1 187 55.1
TAR383G0759 Trochodendron aralioides HOM05D003034 ORTHO05D003815 5.6e-37 159.1 187 56.1
AUR62010919 Chenopodium quinoa HOM05D003034 ORTHO05D003815 7.3e-37 158.7 185 56.2
ClCG11G002250 Citrullus lanatus HOM05D003034 ORTHO05D003815 7.3e-37 158.7 186 55.9
ClCG11G011740 Citrullus lanatus HOM05D003034 ORTHO05D003815 7.3e-37 158.7 186 55.9
Duzib187G0042 Durio zibethinus HOM05D003034 ORTHO05D003815 7.3e-37 158.7 186 55.4
Aqoxy5G03604 Aquilegia oxysepala HOM05D003034 ORTHO05D003815 1.6e-36 157.5 187 55.1
Lsat_1_v5_gn_8_96740 Lactuca sativa HOM05D003034 ORTHO05D003815 1.6e-36 157.5 188 53.7
Lsat_1_v5_gn_8_96801 Lactuca sativa HOM05D003034 ORTHO05D003815 1.6e-36 157.5 188 53.7
TAR626G0953 Trochodendron aralioides HOM05D003034 ORTHO05D003815 1.6e-36 157.5 187 56.1
unitig_748.g6993 Utricularia gibba HOM05D003034 ORTHO05D003815 1.6e-36 157.5 187 54.5
ATR0705G182 Amborella trichopoda HOM05D003034 ORTHO05D003815 2.1e-36 157.1 185 54.1
AUR62029022 Chenopodium quinoa HOM05D003034 ORTHO05D003815 2.1e-36 157.1 185 55.7
ECA247G1716 Erigeron canadensis HOM05D003034 ORTHO05D003815 2.1e-36 157.1 185 54.1
Lj7P662T23 Lonicera japonica HOM05D003034 ORTHO05D003815 2.1e-36 157.1 187 54.0
MD02G1060800 Malus domestica HOM05D003034 ORTHO05D003815 2.1e-36 157.1 189 54.0
PSO541G1919 Papaver somniferum HOM05D003034 ORTHO05D003815 2.1e-36 157.1 185 55.1
SalBow6G1785 Salvia bowleyana HOM05D003034 ORTHO05D003815 2.1e-36 157.1 185 55.1
AUR62039009 Chenopodium quinoa HOM05D003034 ORTHO05D003815 3.6e-36 156.4 187 55.6
Sc18g0001400 Simmondsia chinensis HOM05D003034 ORTHO05D003815 3.6e-36 156.4 186 54.8
ATR0767G058 Amborella trichopoda HOM05D003034 ORTHO05D003815 4.7e-36 156.0 185 53.5
PSO675G1466 Papaver somniferum HOM05D003034 ORTHO05D003815 4.7e-36 156.0 185 54.6
EL10Ac8g18404 Beta vulgaris HOM05D003034 ORTHO05D003815 6.2e-36 155.6 186 55.4
Migut.F00702 Erythranthe guttata HOM05D003034 ORTHO05D003815 6.2e-36 155.6 187 53.5
Prupe.6G190500 Prunus persica HOM05D003034 ORTHO05D003815 6.2e-36 155.6 187 52.9
MD15G1194300 Malus domestica HOM05D003034 ORTHO05D003815 8.1e-36 155.2 189 53.4
BraA02t07133Z Brassica rapa HOM05D003034 ORTHO05D003815 1.1e-35 154.8 134 66.4
QL07p045689 Quercus lobata HOM05D003034 ORTHO05D003815 1.1e-35 154.8 187 55.6
ECA234G3488 Erigeron canadensis HOM05D003034 ORTHO05D003815 1.4e-35 154.5 188 52.7
SGA_v2.0_scaffold2G00918 Striga asiatica HOM05D003034 ORTHO05D003815 1.4e-35 154.5 185 53.5
Cfa003200 Carpinus fangiana HOM05D003034 ORTHO05D003815 4.0e-35 152.9 187 52.9
CiPaw.03G226500 Carya illinoinensis HOM05D003034 ORTHO05D003815 4.0e-35 152.9 187 54.5
CDE04G2309 Ceratophyllum demersum HOM05D003034 ORTHO05D003815 4.0e-35 152.9 190 53.7
Nitab4.5_0000571g0140 Nicotiana tabacum HOM05D003034 ORTHO05D003815 4.0e-35 152.9 187 55.6
A02p21160 Brassica napus HOM05D003034 ORTHO05D003815 5.2e-35 152.5 134 65.7
CAN.G1349.3 Capsicum annuum HOM05D003034 ORTHO05D003815 5.2e-35 152.5 189 54.5
Prupe.7G222200 Prunus persica HOM05D003034 ORTHO05D003815 5.2e-35 152.5 188 52.7
DCAR_028668 Daucus carota HOM05D003034 ORTHO05D003815 8.9e-35 151.8 187 53.5
Solyc12g008370.3 Solanum lycopersicum HOM05D003034 ORTHO05D003815 8.9e-35 151.8 187 55.6
Sopen12g003330 Solanum pennellii HOM05D003034 ORTHO05D003815 8.9e-35 151.8 187 55.6
Actinidia32658 Actinidia chinensis HOM05D003034 ORTHO05D003815 1.2e-34 151.4 137 65.7
Nitab4.5_0001364g0040 Nicotiana tabacum HOM05D003034 ORTHO05D003815 1.5e-34 151.0 186 55.4
Nitab4.5_0001004g0210 Nicotiana tabacum HOM05D003034 ORTHO05D003815 2.0e-34 150.6 187 53.5
Nitab4.5_0001886g0070 Nicotiana tabacum HOM05D003034 ORTHO05D003815 2.0e-34 150.6 187 54.0
CiPaw.05G159100 Carya illinoinensis HOM05D003034 ORTHO05D003815 2.6e-34 150.2 187 54.0
PGSC0003DMG400000364 Solanum tuberosum HOM05D003034 ORTHO05D003815 2.6e-34 150.2 190 54.2
AL1G30830 Arabidopsis lyrata HOM05D003034 ORTHO05D003815 3.4e-34 149.8 136 64.7
FvH4_1g05870 Fragaria vesca HOM05D003034 ORTHO05D003815 3.4e-34 149.8 187 53.5
FAN19G3151 Fragaria x ananassa HOM05D003034 ORTHO05D003815 3.4e-34 149.8 187 53.5
SHI17238 Sapria himalayana HOM05D003034 ORTHO05D003815 3.4e-34 149.8 191 51.3
SEGI_22940 Sequoiadendron giganteum HOM05D003034 ORTHO05D003815 3.4e-34 149.8 188 52.7
ECA234G3735 Erigeron canadensis HOM05D003034 ORTHO05D003815 5.8e-34 149.1 188 51.6
FAN26G1867 Fragaria x ananassa HOM05D003034 ORTHO05D003815 7.5e-34 148.7 187 52.9
FAN26G3466 Fragaria x ananassa HOM05D003034 ORTHO05D003815 9.9e-34 148.3 187 52.9
Oeu013765.3 Olea europaea HOM05D003034 ORTHO05D003815 9.9e-34 148.3 187 51.9
FAN23G2752 Fragaria x ananassa HOM05D003034 ORTHO05D003815 1.3e-33 147.9 187 52.9
HanXRQChr12g0355101 Helianthus annuus HOM05D003034 ORTHO05D003815 1.3e-33 147.9 180 53.3
PSO333G0016 Papaver somniferum HOM05D003034 ORTHO05D003815 1.3e-33 147.9 191 52.4
Carub.0006s0828 Capsella rubella HOM05D003034 ORTHO05D003815 1.7e-33 147.5 173 60.7
Haze_25807 Corylus avellana HOM05D003034 ORTHO05D003815 2.2e-33 147.1 184 52.7
PSO339G3427 Papaver somniferum HOM05D003034 ORTHO05D003815 1.4e-32 144.4 188 49.5
Peaxi162Scf00463g00215 Petunia axillaris HOM05D003034 ORTHO05D003815 7.1e-32 142.1 190 51.1
Mapoly0133s0002 Marchantia polymorpha HOM05D003034 ORTHO05D003815 4.6e-31 139.4 185 49.7
BolC2t09453H Brassica oleracea HOM05D003034 ORTHO05D003815 1.0e-30 138.3 135 62.2
Nn6g34053 Nelumbo nucifera HOM05D003034 ORTHO05D003815 2.3e-30 137.1 160 55.0
Thhalv10009601m.g Eutrema salsugineum HOM05D003034 ORTHO05D003815 5.1e-30 136.0 134 61.9
Thecc.04G177800 Theobroma cacao HOM05D003034 ORTHO05D003815 1.1e-29 134.8 162 53.1
Ciclev10012199m.g Citrus clementina HOM05D003034 ORTHO05D003815 1.5e-29 134.4 137 58.4
DCAR_019351 Daucus carota HOM05D003034 ORTHO05D003815 1.5e-29 134.4 189 48.1
HanXRQChr06g0165831 Helianthus annuus HOM05D003034 ORTHO05D003815 1.5e-29 134.4 138 58.0
AUR62021432 Chenopodium quinoa HOM05D003034 ORTHO05D003815 2.5e-29 133.7 174 51.1
Peaxi162Scf00665g00023 Petunia axillaris HOM05D003034 ORTHO05D003815 2.5e-29 133.7 133 60.9
MD02G1060700 Malus domestica HOM05D003034 ORTHO05D003815 3.3e-29 133.3 184 48.4
TPR.G35643 Trifolium pratense HOM05D002784 ORTHO05D003113 5.6e-29 132.5 131 59.5
Carub.0001s1804 Capsella rubella HOM05D003034 ORTHO05D003815 7.3e-29 132.1 136 61.8
Ciclev10012059m.g Citrus clementina HOM05D003034 ORTHO05D003815 2.1e-28 130.6 137 56.9
Nitab4.5_0004962g0020 Nicotiana tabacum HOM05D003034 ORTHO05D003815 2.8e-28 130.2 135 56.3
FAN28G1237 Fragaria x ananassa HOM05D003034 ORTHO05D003815 1.4e-27 127.9 186 48.9
CARHR019020 Cardamine hirsuta HOM05D003034 ORTHO05D003815 4.0e-27 126.3 117 64.1
CBR_g39572 Chara braunii HOM05D003034 ORTHO05D000048 4.0e-27 126.3 185 49.2
MD02G1060600 Malus domestica HOM05D003034 ORTHO05D003815 2.6e-26 123.6 196 43.4
CDE02G1105 Ceratophyllum demersum HOM05D003034 ORTHO05D003815 9.9e-26 121.7 117 59.8
Pp3c12_6510 Physcomitrium patens HOM05D003034 ORTHO05D003815 9.9e-26 121.7 185 45.4
GSVIVG01015321001 Vitis vinifera HOM05D003034 ORTHO05D003815 2.2e-25 120.6 187 48.1
RcHm_v2.0_Chr2g0091531 Rosa chinensis HOM05D003034 ORTHO05D003815 8.4e-25 118.6 162 51.2
AagrBONN_evm.TU.Sc2ySwM_344.799 Anthoceros agrestis HOM05D003034 ORTHO05D003815 1.1e-24 118.2 186 48.9
PSO333G0001 Papaver somniferum HOM05D003034 ORTHO05D003815 1.4e-24 117.9 137 51.1
FAN12G0026 Fragaria x ananassa HOM05D000251 ORTHO05D000414 1.9e-24 117.5 137 53.3
Os06g0218000 Oryza sativa ssp. japonica HOM05D003034 ORTHO05D003815 3.2e-24 116.7 137 56.2
Oeu011147.2 Olea europaea HOM05D003034 ORTHO05D003815 9.2e-24 115.2 187 44.9
COL.COLO4_34758 Corchorus olitorius HOM05D003034 ORTHO05D003815 1.2e-23 114.8 137 55.5
RcHm_v2.0_Chr4g0445081 Rosa chinensis HOM05D003034 ORTHO05D003815 2.7e-23 113.6 203 42.9
SMO358G0498 Selaginella moellendorffii HOM05D003034 ORTHO05D003815 3.5e-23 113.2 187 44.4
Nitab4.5_0005816g0030 Nicotiana tabacum HOM05D003034 ORTHO05D003815 1.3e-22 111.3 134 52.2
Actinidia03787 Actinidia chinensis HOM05D003034 ORTHO05D003815 2.3e-22 110.5 187 45.5
Rhsim03G0075400 Rhododendron simsii HOM05D003034 ORTHO05D003815 8.7e-22 108.6 137 51.1
FvH4_4g35450 Fragaria vesca HOM05D003034 ORTHO05D003815 1.5e-21 107.8 326 31.6
C02p34310 Brassica napus HOM05D003034 ORTHO05D003815 3.3e-21 106.7 97 61.9
PSO017G0874 Papaver somniferum HOM05D003034 ORTHO05D003815 1.4e-19 101.3 149 46.3
CANSAT56G0252 Cannabis sativa HOM05D003034 ORTHO05D003815 1.2e-18 98.2 173 43.4
PRCOL_00001697 Prasinoderma coloniale HOM05D003034 ORTHO05D003815 1.3e-17 94.7 185 37.8
QL12p007741 Quercus lobata HOM05D003034 ORTHO05D003815 2.9e-17 93.6 79 65.8
PGSC0003DMG400039821 Solanum tuberosum HOM05D003034 ORTHO05D003815 1.4e-16 91.3 135 49.6
FAN17G1037 Fragaria x ananassa HOM05D003034 ORTHO05D003815 4.2e-16 89.7 111 50.5
Solyc11g017220.1 Solanum lycopersicum HOM05D003034 ORTHO05D003815 6.0e-15 85.9 135 48.9
RcHm_v2.0_Chr2g0091611 Rosa chinensis HOM05D003034 ORTHO05D003815 8.7e-14 82.0 186 40.3
Sopen11g009120 Solanum pennellii HOM05D003034 ORTHO05D003815 2.1e-12 77.4 135 45.9
CARHR203500 Cardamine hirsuta HOM05D003034 ORTHO05D003815 6.2e-12 75.9 79 58.2
ECA233G3552 Erigeron canadensis HOM05D003034 ORTHO05D003815 6.2e-12 75.9 76 52.6
Cre01.g051100 Chlamydomonas reinhardtii HOM05D003034 ORTHO05D003815 4.0e-11 73.2 153 42.5
Cfa023747 Carpinus fangiana HOM05D003034 ORTHO05D003815 2.0e-10 70.9 147 34.0
SMO271G0070 Selaginella moellendorffii HOM05D003034 ORTHO05D003815 2.2e-09 67.4 85 49.4
QL05p029156 Quercus lobata HOM05D003034 ORTHO05D003815 2.9e-09 67.0 138 41.3
Nitab4.5_0000363g0040 Nicotiana tabacum HOM05D003034 ORTHO05D285662 8.4e-09 65.5 132 38.6
FAN07G1834 Fragaria x ananassa HOM05D003034 ORTHO05D003815 3.2e-08 63.5 137 35.8
Sed0026005 Sechium edule HOM05D003034 ORTHO05D003815 2.3e-06 57.4 141 37.6
Hma1.2p1_0177F.1_g078010 Hydrangea macrophylla HOM05D003034 ORTHO05D228280 3.0e-06 57.0 62 51.6


User provided reference genes

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