Gene: COL.COLO4_34776

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_34776
  • Transcript Identifier COL.rna33466
  • Gene Type Coding gene
  • Location AWUE01022440.1 : 49736-51571 : negative

Gene Family Information

  • ID HOM05D003034
  • #Genes/#Species 227/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna33466
  • GenBank OMO58243.1
  • id gene34748
  • gene_name COLO4_34776
  • uniprot A0A1R3GJI1

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:2000028
ISO
PLAZA Integrative Orthologyregulation of photoperiodism, flowering AT1G77180
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT1G77180
GO:0010555
ISO
PLAZA Integrative Orthologyresponse to mannitol AT1G77180
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated AT1G77180
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT1G77180
GO:0042752
ISO
PLAZA Integrative Orthologyregulation of circadian rhythm AT1G77180
GO:1902584
ISO
PLAZA Integrative Orthologypositive regulation of response to water deprivation Os02g0759800
GO:1901002
ISO
PLAZA Integrative Orthologypositive regulation of response to salt stress Os02g0759800
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT1G77180
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT1G77180
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G77180
GO:0036002
ISO
PLAZA Integrative Orthologypre-mRNA binding AT1G77180

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G77180
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G77180
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
IEA
InterProspliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004015 SKI-interacting protein SKIP, SNW domain
IPR017862 SKI-interacting protein, SKIP
Mapman id Description
16.2.5.2.2 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.component SKIP/MAC6