Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g21405 Schrenkiella parvula HOM05D001690 ORTHO05D002627 3.4e-71 271.6 137 100.0
Sp1g21400 Schrenkiella parvula HOM05D001690 ORTHO05D002627 1.6e-52 209.5 107 97.2
Carub.0001s2352 Capsella rubella HOM05D001690 ORTHO05D002627 2.3e-43 179.1 109 84.4
BcaB07g32380 Brassica carinata HOM05D001690 ORTHO05D009096 6.7e-43 177.6 109 83.5
Thhalv10008082m.g Eutrema salsugineum HOM05D001690 ORTHO05D002627 1.7e-41 172.9 107 83.2
AL1G37890 Arabidopsis lyrata HOM05D001690 ORTHO05D002627 3.7e-41 171.8 111 83.8
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.5e-39 166.4 116 79.3
AL243U10010 Arabidopsis lyrata HOM05D001690 ORTHO05D002627 5.9e-39 164.5 106 77.4
AT1G24090 Arabidopsis thaliana HOM05D001690 ORTHO05D002627 2.2e-38 162.5 111 79.3
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 2.2e-38 162.5 111 81.1
BraA09t39574Z Brassica rapa HOM05D001690 ORTHO05D009096 2.2e-38 162.5 111 81.1
Carub.0008s1108 Capsella rubella HOM05D001690 ORTHO05D002627 5.0e-38 161.4 108 72.2
Aa31LG7G7860 Aethionema arabicum HOM05D001690 ORTHO05D002627 1.9e-37 159.5 113 69.9
BolC5t31021H Brassica oleracea HOM05D001690 ORTHO05D009096 1.9e-37 159.5 116 76.7
BcaC05g26303 Brassica carinata HOM05D001690 ORTHO05D009096 2.1e-36 156.0 114 76.3
THA.LOC104824673 Tarenaya hassleriana HOM05D001690 ORTHO05D002627 3.0e-27 125.6 114 62.3
AL8G25330 Arabidopsis lyrata HOM05D001690 ORTHO05D002627 3.5e-23 112.1 76 76.3
Cpa.g.sc5.352 Carica papaya HOM05D001690 ORTHO05D002627 2.4e-16 89.4 119 45.4
COL.COLO4_37898 Corchorus olitorius HOM05D001690 ORTHO05D002627 2.0e-15 86.3 116 43.1
GSVIVG01020170001 Vitis vinifera HOM05D001690 ORTHO05D002627 3.2e-13 79.0 117 42.7
Gorai.009G350100 Gossypium raimondii HOM05D001690 ORTHO05D002627 4.2e-13 78.6 121 39.7
MD16G1087400 Malus domestica HOM05D001690 ORTHO05D002627 4.2e-13 78.6 127 38.6
Ah.02g131560 Amaranthus hybridus HOM05D001690 ORTHO05D002627 7.2e-13 77.8 104 45.2
PGR119G1314 Punica granatum HOM05D001690 ORTHO05D009096 2.1e-12 76.3 124 39.5
QL03p062472 Quercus lobata HOM05D001690 ORTHO05D002627 2.1e-12 76.3 117 40.2
Cfa009103 Carpinus fangiana HOM05D001690 ORTHO05D009096 6.1e-12 74.7 120 45.0
Duzib268G0426 Durio zibethinus HOM05D001690 ORTHO05D002627 6.1e-12 74.7 118 39.8
Prupe.1G259600 Prunus persica HOM05D001690 ORTHO05D002627 1.0e-11 73.9 119 37.0
Rhsim12G0048800 Rhododendron simsii HOM05D001690 ORTHO05D002627 1.8e-11 73.2 64 54.7
Gorai.005G185700 Gossypium raimondii HOM05D001690 ORTHO05D002627 3.0e-11 72.4 123 39.0
Haze_12140 Corylus avellana HOM05D001690 ORTHO05D002627 4.0e-11 72.0 116 40.5
Ciclev10031867m.g Citrus clementina HOM05D001690 ORTHO05D002627 5.2e-11 71.6 113 38.9
Sc11g0001360 Simmondsia chinensis HOM05D001690 ORTHO05D002627 5.2e-11 71.6 118 38.1
Atru.chr11.1965 Acer truncatum HOM05D001690 ORTHO05D002627 8.8e-11 70.9 117 41.9
Nitab4.5_0000257g0250 Nicotiana tabacum HOM05D001690 ORTHO05D002627 8.8e-11 70.9 67 50.7
vmacro01196 Vaccinium macrocarpon HOM05D001690 ORTHO05D002627 2.0e-10 69.7 73 49.3
FvH4_2g39271 Fragaria vesca HOM05D001690 ORTHO05D002627 2.6e-10 69.3 114 42.1
Nitab4.5_0005722g0020 Nicotiana tabacum HOM05D001690 ORTHO05D002627 2.6e-10 69.3 58 53.4
Hund05956 Selenicereus undatus HOM05D001690 ORTHO05D002627 2.6e-10 69.3 125 31.2
AT5G51080 Arabidopsis thaliana HOM05D001690 ORTHO05D002627 3.4e-10 68.9 43 74.4
Actinidia08180 Actinidia chinensis HOM05D001690 ORTHO05D002627 5.7e-10 68.2 117 41.9
Sabra10G0067400 Salix brachista HOM05D001690 ORTHO05D002627 5.7e-10 68.2 117 39.3
TAR371G0464 Trochodendron aralioides HOM05D001690 ORTHO05D002627 5.7e-10 68.2 66 54.5
Cc11_g13600 Coffea canephora HOM05D001690 ORTHO05D002627 1.3e-09 67.0 95 41.1
CSS0010802 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D002627 1.7e-09 66.6 115 41.7
CSS0013441 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D002627 1.7e-09 66.6 115 41.7
CARHR024370 Cardamine hirsuta HOM05D001690 ORTHO05D002627 2.2e-09 66.2 41 78.0
Prupe.1G373800 Prunus persica HOM05D001690 ORTHO05D002627 2.2e-09 66.2 122 37.7
Peaxi162Scf00421g00712 Petunia axillaris HOM05D001690 ORTHO05D002627 2.8e-09 65.9 118 39.0
Lj4g0014493 Lotus japonicus HOM05D001690 ORTHO05D002627 3.7e-09 65.5 117 38.5
Psat4g126200 Pisum sativum HOM05D001690 ORTHO05D002627 3.7e-09 65.5 108 41.7
Eucgr.B02559 Eucalyptus grandis HOM05D001690 ORTHO05D002627 4.8e-09 65.1 115 41.7
Lj1C962G6 Lonicera japonica HOM05D001690 ORTHO05D002627 4.8e-09 65.1 124 40.3
Phvul.003G055000 Phaseolus vulgaris HOM05D001690 ORTHO05D002627 4.8e-09 65.1 114 38.6
CANSAT78G0546 Cannabis sativa HOM05D001690 ORTHO05D002627 6.3e-09 64.7 36 75.0
Lalb_Chr05g0228001 Lupinus albus HOM05D001690 ORTHO05D002627 6.3e-09 64.7 130 35.4
Migut.L01443 Erythranthe guttata HOM05D001690 ORTHO05D002627 8.3e-09 64.3 92 37.0
ClCG09G020670 Citrullus lanatus HOM05D001690 ORTHO05D002627 1.4e-08 63.5 116 35.3
Nitab4.5_0000031g0340 Nicotiana tabacum HOM05D001690 ORTHO05D002627 1.4e-08 63.5 56 50.0
Nitab4.5_0006492g0030 Nicotiana tabacum HOM05D001690 ORTHO05D002627 1.4e-08 63.5 56 50.0
Solyc04g005010.4 Solanum lycopersicum HOM05D001690 ORTHO05D002627 1.4e-08 63.5 115 36.5
Sopen04g001020 Solanum pennellii HOM05D001690 ORTHO05D002627 1.4e-08 63.5 115 36.5
Sopen05g002110 Solanum pennellii HOM05D001690 ORTHO05D002627 1.4e-08 63.5 118 39.8
SGA_v2.0_scaffold8G04244 Striga asiatica HOM05D001690 ORTHO05D002627 1.4e-08 63.5 57 54.4
AUR62026582 Chenopodium quinoa HOM05D001690 ORTHO05D002627 1.8e-08 63.2 89 38.2
Aqoxy3G03078 Aquilegia oxysepala HOM05D001690 ORTHO05D002627 2.4e-08 62.8 117 38.5
Psat4g126440 Pisum sativum HOM05D001690 ORTHO05D002627 2.4e-08 62.8 106 40.6
Sed0007819 Sechium edule HOM05D001690 ORTHO05D002627 3.1e-08 62.4 66 50.0
Solyc05g006090.4 Solanum lycopersicum HOM05D001690 ORTHO05D002627 3.1e-08 62.4 62 50.0
HPP92_022398 Vanilla planifolia HOM05D001690 ORTHO05D002627 3.1e-08 62.4 62 51.6
HPP92_027514 Vanilla planifolia HOM05D001690 ORTHO05D002627 3.1e-08 62.4 62 51.6
Lsat_1_v5_gn_8_160200 Lactuca sativa HOM05D001690 ORTHO05D002627 4.1e-08 62.0 50 60.0
PGSC0003DMG400001921 Solanum tuberosum HOM05D001690 ORTHO05D002627 4.1e-08 62.0 58 48.3
DCAR_031083 Daucus carota HOM05D001690 ORTHO05D002627 5.4e-08 61.6 117 37.6
MBI14_g34517_MAGBIO Magnolia biondii HOM05D001690 ORTHO05D002627 5.4e-08 61.6 112 36.6
MD15G1022000 Malus domestica HOM05D001690 ORTHO05D002627 5.4e-08 61.6 122 34.4
TAR629G1199 Trochodendron aralioides HOM05D001690 ORTHO05D002627 5.4e-08 61.6 132 36.4
Ah.03g132370 Amaranthus hybridus HOM05D000337 ORTHO05D000297 7.0e-08 61.2 58 46.6
MSTRG.618 Avicennia marina HOM05D001690 ORTHO05D002627 7.0e-08 61.2 106 37.7
Lj3C1049G3 Lonicera japonica HOM05D001690 ORTHO05D009096 7.0e-08 61.2 57 49.1
MSTRG.7875 Avicennia marina HOM05D001690 ORTHO05D002627 9.1e-08 60.8 55 50.9
Cc08_g11240 Coffea canephora HOM05D001690 ORTHO05D002627 9.1e-08 60.8 53 50.9
EL10Ac6g13730 Beta vulgaris HOM05D001690 ORTHO05D002627 1.2e-07 60.5 114 37.7
Lsat_1_v5_gn_3_49101 Lactuca sativa HOM05D001690 ORTHO05D002627 1.2e-07 60.5 59 52.5
Oeu001658.1 Olea europaea HOM05D001690 ORTHO05D002627 1.6e-07 60.1 60 46.7
PSO063G6989 Papaver somniferum HOM05D001690 ORTHO05D002627 1.6e-07 60.1 33 75.8
Ca_22778_v3 Cicer arietinum L. HOM05D001690 ORTHO05D002627 2.0e-07 59.7 118 39.8
RcHm_v2.0_Chr6g0245201 Rosa chinensis HOM05D001690 ORTHO05D002627 2.0e-07 59.7 120 40.0
ECA246G4654 Erigeron canadensis HOM05D001690 ORTHO05D002627 2.7e-07 59.3 60 51.7
HanXRQChr15g0476641 Helianthus annuus HOM05D001690 ORTHO05D002627 2.7e-07 59.3 32 78.1
RcHm_v2.0_Chr6g0301731 Rosa chinensis HOM05D001690 ORTHO05D002627 2.7e-07 59.3 119 39.5
Nn3g16975 Nelumbo nucifera HOM05D001690 ORTHO05D002627 4.5e-07 58.5 35 68.6
Eucgr.I01834 Eucalyptus grandis HOM05D001690 ORTHO05D002627 5.9e-07 58.2 34 70.6
FvH4_6g50271 Fragaria vesca HOM05D001690 ORTHO05D002627 5.9e-07 58.2 33 75.8
RcHm_v2.0_Chr2g0170591 Rosa chinensis HOM05D001690 ORTHO05D002627 5.9e-07 58.2 33 75.8
arahy.Tifrunner.gnm1.ann1.8SCN2T Arachis hypogaea HOM05D001690 ORTHO05D002627 7.7e-07 57.8 119 41.2
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 7.7e-07 57.8 33 75.8
Migut.E00140 Erythranthe guttata HOM05D001690 ORTHO05D002627 7.7e-07 57.8 103 36.9
Lj7A409G61 Lonicera japonica HOM05D001690 ORTHO05D002627 7.7e-07 57.8 33 72.7
Oeu012249.2 Olea europaea HOM05D001690 ORTHO05D002627 7.7e-07 57.8 47 51.1
SGA_v2.0_scaffold87G27000 Striga asiatica HOM05D001690 ORTHO05D002627 7.7e-07 57.8 55 50.9
TWI36G1443 Tripterygium wilfordii HOM05D001690 ORTHO05D002627 7.7e-07 57.8 58 50.0
HanXRQChr11g0323641 Helianthus annuus HOM05D001690 ORTHO05D002627 1.0e-06 57.4 31 77.4
Rhsim08G0056900 Rhododendron simsii HOM05D001690 ORTHO05D002627 1.0e-06 57.4 33 72.7
arahy.Tifrunner.gnm1.ann1.AP71DE Arachis hypogaea HOM05D001690 ORTHO05D002627 1.3e-06 57.0 120 40.8
TPR.G40109 Trifolium pratense HOM05D001690 ORTHO05D002627 1.3e-06 57.0 64 56.2
Sed0027377 Sechium edule HOM05D001690 ORTHO05D002627 1.7e-06 56.6 114 35.1
Atru.chr8.2425 Acer truncatum HOM05D001690 ORTHO05D002627 2.3e-06 56.2 33 75.8
CsaV3_5G025720 Cucumis sativus L. HOM05D001690 ORTHO05D002627 2.3e-06 56.2 122 32.0
PGSC0003DMG400015576 Solanum tuberosum HOM05D001690 ORTHO05D002627 2.3e-06 56.2 32 68.8
Actinidia33972 Actinidia chinensis HOM05D001690 ORTHO05D002627 2.9e-06 55.8 33 72.7
CSS0041273 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D002627 3.8e-06 55.5 33 66.7
CSS0041634 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D002627 3.8e-06 55.5 33 66.7
AUR62039405 Chenopodium quinoa HOM05D001690 ORTHO05D002627 3.8e-06 55.5 62 43.5
PSO063G4956 Papaver somniferum HOM05D001690 ORTHO05D002627 3.8e-06 55.5 113 38.1
Rhsim08G0061200 Rhododendron simsii HOM05D001690 ORTHO05D002627 3.8e-06 55.5 33 69.7
TWI18G1158 Tripterygium wilfordii HOM05D001690 ORTHO05D002627 3.8e-06 55.5 51 54.9
VMungo0251G3618 Vigna mungo HOM05D001690 ORTHO05D002627 3.8e-06 55.5 63 47.6
MELO3C002906.2 Cucumis melo HOM05D001690 ORTHO05D002627 5.0e-06 55.1 122 32.0
SHI21654 Sapria himalayana HOM05D001690 ORTHO05D002627 5.0e-06 55.1 48 58.3
arahy.Tifrunner.gnm1.ann1.84PEGK Arachis hypogaea HOM05D001690 ORTHO05D002627 6.6e-06 54.7 51 56.9
Prupe.3G280000 Prunus persica HOM05D001690 ORTHO05D002627 6.6e-06 54.7 32 71.9
AL3G10790 Arabidopsis lyrata HOM05D001690 ORTHO05D002627 8.6e-06 54.3 34 61.8
AT3G01410 Arabidopsis thaliana HOM05D001690 ORTHO05D002627 8.6e-06 54.3 34 61.8
CARHR075560 Cardamine hirsuta HOM05D001690 ORTHO05D002627 8.6e-06 54.3 34 61.8
Thhalv10021278m.g Eutrema salsugineum HOM05D001690 ORTHO05D002627 8.6e-06 54.3 34 61.8
Sp3g00650 Schrenkiella parvula HOM05D001690 ORTHO05D002627 8.6e-06 54.3 32 68.8
PGSC0003DMG402016404 Solanum tuberosum HOM05D001690 ORTHO05D002627 8.6e-06 54.3 32 62.5


User provided reference genes

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