Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 2.8e-57 224.9 104 100.0
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 4.2e-53 211.1 104 93.3
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 2.3e-51 205.3 104 90.4
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 8.7e-51 203.4 104 89.4
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 8.7e-51 203.4 104 89.4
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 8.7e-51 203.4 104 89.4
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 8.7e-51 203.4 104 89.4
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 8.7e-51 203.4 104 89.4
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 8.7e-51 203.4 104 89.4
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 8.7e-51 203.4 104 89.4
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 8.7e-51 203.4 104 89.4
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 2.5e-50 201.8 104 88.5
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 2.8e-49 198.4 107 86.9
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 6.2e-49 197.2 107 86.0
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 1.4e-48 196.1 107 85.0
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 3.1e-48 194.9 107 86.0
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 4.0e-48 194.5 107 86.0
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 1.7e-46 189.1 107 81.3
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 9.6e-42 173.3 108 73.1
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 2.2e-30 135.6 112 58.9
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 6.5e-30 134.0 111 57.7
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 8.4e-30 133.7 112 55.4
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 8.4e-30 133.7 112 55.4
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 8.4e-30 133.7 111 56.8
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 8.4e-30 133.7 112 58.0
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.4e-29 132.9 111 56.8
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 1.4e-29 132.9 112 54.5
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.9e-29 132.5 111 56.8
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 4.2e-29 131.3 111 55.9
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 4.2e-29 131.3 111 55.9
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 1.2e-28 129.8 111 56.8
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 2.1e-28 129.0 110 54.5
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 2.7e-28 128.6 107 54.2
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 3.5e-28 128.3 111 55.9
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 3.5e-28 128.3 112 53.6
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 4.6e-28 127.9 110 54.5
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 6.0e-28 127.5 110 52.7
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 1.0e-27 126.7 112 53.6
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 2.3e-27 125.6 112 55.4
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 2.3e-27 125.6 112 54.5
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 3.0e-27 125.2 112 50.0
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 3.0e-27 125.2 112 50.0
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 6.7e-27 124.0 112 52.7
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 6.7e-27 124.0 112 52.7
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 8.7e-27 123.6 113 53.1
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 1.1e-26 123.2 111 52.3
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 1.1e-26 123.2 112 49.1
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 1.1e-26 123.2 112 49.1
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 1.5e-26 122.9 69 82.6
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 1.5e-26 122.9 111 55.9
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 2.5e-26 122.1 112 50.9
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 3.3e-26 121.7 110 49.1
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.3e-26 121.7 113 52.2
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.3e-26 121.7 113 52.2
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.3e-26 121.7 113 52.2
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 3.3e-26 121.7 113 52.2
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 4.3e-26 121.3 111 51.4
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 5.7e-26 120.9 111 51.4
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 5.7e-26 120.9 112 50.9
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 7.4e-26 120.6 113 54.9
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 7.4e-26 120.6 107 50.5
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 9.6e-26 120.2 113 53.1
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 9.6e-26 120.2 107 50.5
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 1.6e-25 119.4 111 51.4
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 1.6e-25 119.4 112 48.2
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 2.1e-25 119.0 113 53.1
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 2.1e-25 119.0 113 53.1
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 3.7e-25 118.2 112 51.8
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 4.8e-25 117.9 113 53.1
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 5.3e-24 114.4 110 50.9
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 6.9e-24 114.0 107 47.7
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 9.0e-24 113.6 111 49.5
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 9.0e-24 113.6 112 48.2
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 1.5e-23 112.8 112 50.0
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 2.0e-23 112.5 97 52.6
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 3.4e-23 111.7 91 57.1
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 5.8e-23 110.9 107 45.8
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.8e-23 110.9 107 45.8
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.8e-23 110.9 107 45.8
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.8e-23 110.9 107 45.8
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.8e-23 110.9 107 45.8
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.8e-23 110.9 107 45.8
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.8e-23 110.9 107 45.8
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 7.6e-23 110.5 112 49.1
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 7.6e-23 110.5 111 47.7
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 7.6e-23 110.5 111 47.7
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 7.6e-23 110.5 111 47.7
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 3.8e-22 108.2 110 46.4
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 5.0e-22 107.8 112 49.1
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 6.5e-22 107.5 111 48.6
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 6.5e-22 107.5 112 47.3
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 1.1e-21 106.7 116 44.0
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 1.9e-21 105.9 112 44.6
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 1.9e-21 105.9 99 48.5
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 2.5e-21 105.5 111 46.8
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 4.2e-21 104.8 112 42.9
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 4.2e-21 104.8 112 42.9
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 7.2e-21 104.0 109 47.7
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 7.2e-21 104.0 115 42.6
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 9.3e-21 103.6 112 48.2
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 9.3e-21 103.6 110 43.6
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 9.3e-21 103.6 112 42.9
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 1.6e-20 102.8 90 51.1
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 1.6e-20 102.8 110 48.2
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 6.1e-20 100.9 113 45.1
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 1.0e-19 100.1 111 46.8
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 6.7e-19 97.4 111 45.0
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 1.1e-18 96.7 110 44.5
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 1.9e-18 95.9 113 45.1
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 2.5e-18 95.5 81 51.9
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 9.7e-18 93.6 111 46.8
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 2.8e-17 92.0 109 42.2
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 4.8e-17 91.3 113 41.6
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 2.4e-16 89.0 111 44.1
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 1.5e-15 86.3 107 38.3
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 2.6e-15 85.5 84 51.2
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 3.4e-15 85.1 137 36.5
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 4.5e-15 84.7 75 54.7
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 4.5e-15 84.7 110 42.7
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 1.3e-14 83.2 102 40.2
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 8.5e-14 80.5 89 42.7
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 1.1e-13 80.1 66 54.5
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 1.4e-11 73.2 68 50.0
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 3.0e-11 72.0 108 38.9
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 3.3e-10 68.6 79 40.5
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 7.4e-10 67.4 68 47.1
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 2.8e-09 65.5 108 33.3
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 3.7e-09 65.1 93 35.5
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 1.8e-08 62.8 71 40.8
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 3.1e-08 62.0 74 39.2
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 4.1e-08 61.6 68 42.6
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 4.5e-07 58.2 115 33.9
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 1.0e-06 57.0 109 29.4
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 1.3e-06 56.6 55 47.3
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.3e-06 56.6 109 29.4
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 3.8e-06 55.1 101 26.7
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 8.5e-06 53.9 117 29.1


User provided reference genes

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