Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.3e-38 162.5 81 100.0
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 4.9e-33 144.1 81 85.2
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.3e-33 143.3 81 85.2
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.3e-29 131.3 81 76.5
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.3e-29 131.3 81 76.5
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 9.5e-29 129.8 81 75.3
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.7e-28 127.5 75 81.3
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.4e-27 125.9 81 72.8
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.8e-27 125.6 81 72.8
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.0e-27 124.8 80 72.5
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 4.0e-27 124.4 81 71.6
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 8.9e-27 123.2 81 71.6
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-26 122.5 73 78.1
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 2.0e-26 122.1 81 69.1
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 2.0e-26 122.1 81 70.4
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 2.6e-26 121.7 73 76.7
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 7.5e-26 120.2 81 67.9
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 9.8e-26 119.8 73 75.3
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.3e-25 119.4 75 78.7
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.4e-25 117.1 73 74.0
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.3e-25 116.7 73 74.0
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.3e-25 116.7 73 74.0
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-24 116.3 79 67.1
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 1.1e-24 116.3 73 74.0
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.8e-24 115.5 75 74.7
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 4.1e-24 114.4 76 69.7
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.1e-24 114.4 72 72.2
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 5.9e-23 110.5 81 65.4
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 1.0e-22 109.8 79 63.3
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 1.3e-22 109.4 81 64.2
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.3e-22 109.4 81 64.2
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.7e-22 109.0 81 61.7
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 2.3e-22 108.6 81 61.7
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 2.3e-22 108.6 74 66.2
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.3e-22 108.6 73 71.2
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 3.9e-22 107.8 80 61.2
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 6.6e-22 107.1 81 64.2
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 1.5e-21 105.9 81 65.4
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 1.9e-21 105.5 81 60.5
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 2.5e-21 105.1 81 59.3
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 3.3e-21 104.8 81 58.0
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 3.3e-21 104.8 81 58.0
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 4.3e-21 104.4 82 59.8
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 5.6e-21 104.0 81 59.3
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 7.3e-21 103.6 77 61.0
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 7.3e-21 103.6 81 58.0
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 9.5e-21 103.2 81 60.5
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.2e-20 102.8 74 62.2
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 1.2e-20 102.8 77 58.4
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 1.2e-20 102.8 81 55.6
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 1.6e-20 102.4 81 59.3
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 1.6e-20 102.4 76 59.2
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 1.6e-20 102.4 81 55.6
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 2.1e-20 102.1 81 56.8
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 2.1e-20 102.1 81 59.3
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 2.8e-20 101.7 80 56.2
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 3.6e-20 101.3 81 55.6
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 3.6e-20 101.3 81 58.0
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 3.6e-20 101.3 81 56.8
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 3.6e-20 101.3 74 62.2
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 4.7e-20 100.9 81 55.6
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 4.7e-20 100.9 81 55.6
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 6.2e-20 100.5 68 70.6
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 6.2e-20 100.5 77 57.1
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 6.2e-20 100.5 81 58.0
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 6.2e-20 100.5 81 58.0
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 6.2e-20 100.5 81 60.5
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 1.1e-19 99.8 81 58.0
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 1.1e-19 99.8 81 59.3
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 1.8e-19 99.0 81 54.3
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 3.1e-19 98.2 71 60.6
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 3.1e-19 98.2 81 56.8
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 4.0e-19 97.8 81 54.3
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 5.2e-19 97.4 81 56.8
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 5.2e-19 97.4 71 60.6
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 5.2e-19 97.4 71 60.6
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 6.8e-19 97.1 81 54.3
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 6.8e-19 97.1 81 54.3
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 8.9e-19 96.7 81 54.3
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.5e-18 95.9 70 57.1
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 2.0e-18 95.5 81 50.6
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.6e-18 95.1 81 53.1
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 3.4e-18 94.7 81 53.1
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 5.8e-18 94.0 76 52.6
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 5.8e-18 94.0 76 52.6
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 5.8e-18 94.0 76 52.6
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 7.5e-18 93.6 71 56.3
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 7.5e-18 93.6 81 55.6
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 9.8e-18 93.2 73 57.5
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 9.8e-18 93.2 73 56.2
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.7e-17 92.4 73 56.2
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.7e-17 92.4 73 56.2
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 1.7e-17 92.4 81 51.9
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 1.7e-17 92.4 81 53.1
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.9e-17 91.7 73 64.4
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 1.1e-16 89.7 76 53.9
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.9e-16 89.0 73 56.2
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 2.4e-16 88.6 82 51.2
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 2.4e-16 88.6 70 55.7
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 4.1e-16 87.8 71 52.1
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 5.4e-16 87.4 81 54.3
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 9.2e-16 86.7 70 54.3
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 1.2e-15 86.3 74 54.1
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 2.7e-15 85.1 70 48.6
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 4.6e-15 84.3 74 48.6
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 6.0e-15 84.0 73 52.1
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 6.0e-15 84.0 73 52.1
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 6.0e-15 84.0 73 52.1
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 6.0e-15 84.0 74 51.4
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.0e-14 83.2 74 50.0
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 1.3e-14 82.8 73 53.4
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 1.3e-14 82.8 73 53.4
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 1.3e-14 82.8 73 52.1
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 1.7e-14 82.4 74 50.0
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.7e-14 82.4 74 50.0
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.3e-14 82.0 74 50.0
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 2.3e-14 82.0 73 53.4
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 2.3e-14 82.0 73 53.4
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 2.3e-14 82.0 73 53.4
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 2.3e-14 82.0 81 50.6
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 2.3e-14 82.0 71 49.3
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 2.3e-14 82.0 74 50.0
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 3.0e-14 81.6 73 53.4
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 3.0e-14 81.6 60 58.3
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 5.0e-14 80.9 74 47.3
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 5.0e-14 80.9 74 50.0
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 5.0e-14 80.9 82 48.8
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 6.6e-14 80.5 73 52.1
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 6.6e-14 80.5 73 53.4
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 8.6e-14 80.1 71 47.9
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.5e-13 79.3 74 44.6
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.5e-13 79.3 76 46.1
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 1.5e-13 79.3 74 47.3
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-13 79.3 46 80.4
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 4.7e-12 74.3 81 48.1
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.1e-11 71.6 76 43.4
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-10 68.6 43 69.8
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 3.4e-10 68.2 68 44.1
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 9.9e-10 66.6 77 37.7
Solyc10g055030.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.7e-09 64.7 61 52.5
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 6.4e-09 63.9 73 38.4
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 8.3e-09 63.5 65 33.8
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 8.3e-09 63.5 68 38.2
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.3e-09 63.5 32 87.5
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.1e-08 63.2 66 45.5
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 1.6e-07 59.3 75 36.0
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 3.5e-07 58.2 61 39.3
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 6.0e-07 57.4 66 37.9


User provided reference genes

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