Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 0.0e+00 1579.7 797 100.0
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 0.0e+00 1375.5 812 87.3
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 0.0e+00 1345.5 779 86.4
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1104.0 787 70.0
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 0.0e+00 1075.5 812 67.1
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 2.5e-307 1058.5 811 66.1
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 2.1e-306 1055.4 787 67.6
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 6.2e-306 1053.9 784 67.5
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 1.1e-302 1043.1 806 65.4
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 1.1e-302 1043.1 813 65.7
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 7.1e-302 1040.4 807 66.0
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 1.6e-301 1039.3 814 65.7
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 2.7e-301 1038.5 811 66.0
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 6.0e-301 1037.3 811 66.0
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 6.6e-300 1033.9 811 65.0
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 3.6e-298 1028.1 805 65.0
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 1.1e-297 1026.5 813 65.1
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 5.2e-297 1024.2 808 64.9
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 6.8e-297 1023.8 798 66.5
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 1.2e-296 1023.1 804 63.7
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 5.8e-296 1020.8 789 67.6
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 1.6e-293 1012.7 789 65.5
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 4.6e-293 1011.1 811 65.0
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 1.7e-292 1009.2 807 64.2
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 3.0e-292 1008.4 784 65.6
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 3.0e-292 1008.4 814 64.6
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 3.9e-292 1008.1 807 64.2
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 6.6e-292 1007.3 807 64.4
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 8.6e-292 1006.9 809 64.8
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 7.3e-291 1003.8 806 64.0
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 4.7e-290 1001.1 805 64.7
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 4.0e-289 998.0 733 69.3
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 1.5e-288 996.1 786 63.2
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 2.6e-288 995.3 803 63.5
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 3.4e-288 995.0 811 62.6
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 1.7e-287 992.6 830 61.8
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 3.8e-287 991.5 784 63.9
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 2.4e-286 988.8 807 62.5
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.4e-286 987.6 806 63.4
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 8.7e-284 980.3 789 62.0
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 8.7e-284 980.3 784 63.6
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 2.8e-282 975.3 794 63.0
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 1.7e-279 966.1 806 62.3
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 6.4e-279 964.1 785 64.7
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 1.7e-276 956.1 788 60.8
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.1e-275 953.4 793 60.7
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 2.5e-275 952.2 788 62.7
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 7.3e-275 950.7 809 60.1
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 2.8e-274 948.7 784 62.0
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 4.8e-274 948.0 789 61.3
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.1e-273 946.8 798 60.4
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 2.4e-273 945.7 788 61.4
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 9.0e-273 943.7 785 62.5
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 1.2e-272 943.3 789 60.3
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 2.6e-272 942.2 705 67.5
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.4e-272 941.8 807 61.0
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 3.2e-270 935.3 784 61.4
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 2.1e-269 932.6 786 59.5
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 3.5e-269 931.8 784 60.7
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 1.0e-268 930.2 868 57.5
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 1.0e-268 930.2 800 60.5
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 2.1e-266 922.5 813 57.9
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 2.8e-266 922.2 817 59.5
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 2.0e-264 916.0 818 59.2
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 3.4e-264 915.2 786 60.3
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 4.5e-264 914.8 868 55.4
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 6.5e-263 911.0 757 60.0
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 2.5e-262 909.1 784 60.5
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 7.1e-262 907.5 481 97.5
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 9.3e-262 907.1 786 60.3
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 1.1e-259 900.2 818 60.1
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 4.0e-257 891.7 809 56.6
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 9.0e-257 890.6 782 58.6
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 4.5e-256 888.3 809 55.9
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 8.4e-255 884.0 812 55.9
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 2.5e-254 882.5 809 56.5
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 1.0e-252 877.1 810 56.7
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.9e-252 875.2 827 58.2
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 6.7e-252 874.4 814 56.3
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 7.4e-251 870.9 808 55.6
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 9.7e-251 870.5 809 55.4
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 1.6e-250 869.8 810 55.2
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 2.2e-247 859.4 836 53.7
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 2.0e-240 836.3 803 54.9
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 9.4e-238 827.4 764 56.4
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 2.7e-237 825.9 807 54.4
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 3.7e-234 815.5 796 54.4
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 9.4e-230 800.8 591 68.5
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 4.5e-224 781.9 613 64.8
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.9e-224 781.6 618 65.5
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.9e-224 781.6 618 65.5
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.6e-216 756.9 621 63.9
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.0e-212 744.2 395 98.2
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 2.8e-210 736.1 761 52.0
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 8.0e-205 718.0 618 60.4
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 1.3e-202 710.7 768 51.0
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 1.1e-201 707.6 719 51.6
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 2.7e-192 676.4 622 56.8
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.2e-187 661.0 804 45.1
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 2.9e-186 656.4 768 47.3
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 1.5e-174 617.5 717 46.7
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.6e-160 570.9 341 81.5
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 6.6e-159 565.5 341 82.1
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 1.3e-157 561.2 373 73.7
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 1.3e-151 541.2 550 53.8
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 1.7e-146 524.2 394 69.5
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.6e-141 507.7 552 48.7
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 5.3e-140 502.7 466 54.3
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 4.8e-133 479.6 330 69.7
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 8.8e-119 432.2 783 34.7
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 1.1e-116 425.2 782 36.1
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.4e-108 398.3 297 71.4
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 6.5e-106 389.4 777 33.2
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.4e-100 370.9 183 97.3
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 4.2e-97 360.1 477 47.2
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 4.0e-87 327.0 464 40.1
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 5.4e-84 316.6 276 60.5
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 4.4e-78 297.0 226 61.9
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.6e-75 288.5 144 97.9
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.0e-74 285.8 140 97.9
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 2.3e-74 284.6 375 46.4
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.8e-72 277.7 171 88.3
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 3.4e-70 270.8 853 29.1
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.3e-69 268.9 171 85.4
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 7.1e-68 263.1 323 45.2
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.9e-65 255.0 303 46.9
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 6.6e-58 229.9 188 59.6
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.9e-57 228.4 230 49.6
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 7.3e-49 199.9 175 60.0
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.5e-41 175.6 218 47.7
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 3.7e-40 171.0 130 62.3
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 5.3e-39 167.2 218 49.1
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.3e-37 162.5 214 41.1
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 3.9e-26 124.4 151 49.0
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 8.7e-18 96.7 867 21.2
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 8.7e-18 96.7 106 46.2
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.4e-15 89.4 43 95.3
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 9.4e-12 76.6 192 30.7
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 3.9e-10 71.2 339 23.3
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 1.1e-07 63.2 72 44.4


User provided reference genes

Program Settings