Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 1.2e-78 296.6 169 100.0
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.0e-61 240.4 169 84.6
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.5e-55 219.2 165 71.5
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 6.1e-54 214.5 167 70.7
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.8e-53 213.0 163 69.3
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.2e-49 200.3 165 66.1
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.2e-48 196.1 160 68.8
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 2.6e-44 182.6 161 62.1
Solyc11g007810.3 Solanum lycopersicum HOM05D004569 ORTHO05D005333 1.3e-40 170.2 106 99.1
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 1.5e-39 166.8 156 57.1
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 9.5e-39 164.1 163 55.8
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 8.9e-37 157.5 163 52.8
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 7.5e-36 154.5 158 53.8
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 2.2e-35 152.9 163 54.0
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.8e-35 152.5 163 52.1
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.8e-34 149.8 163 51.5
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 2.4e-34 149.4 165 50.3
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 4.1e-34 148.7 158 51.9
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 4.1e-34 148.7 147 53.7
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 1.2e-33 147.1 163 50.3
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 2.0e-33 146.4 159 50.9
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 5.9e-33 144.8 163 49.7
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 1.7e-32 143.3 155 51.6
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.3e-32 142.9 163 48.5
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 3.9e-32 142.1 167 47.3
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 5.0e-32 141.7 139 55.4
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 6.6e-32 141.4 161 50.3
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 8.6e-32 141.0 146 53.4
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 8.6e-32 141.0 142 55.6
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 8.6e-32 141.0 137 55.5
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 1.1e-31 140.6 163 51.5
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 1.1e-31 140.6 164 47.6
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 3.3e-31 139.0 148 52.0
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 4.3e-31 138.7 167 48.5
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 5.6e-31 138.3 163 48.5
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 7.3e-31 137.9 163 47.9
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 2.8e-30 136.0 155 49.0
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 8.0e-30 134.4 150 50.7
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 8.0e-30 134.4 163 48.5
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.4e-29 133.7 165 48.5
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 3.1e-29 132.5 169 46.7
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 4.0e-29 132.1 164 47.0
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 4.0e-29 132.1 158 47.5
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 6.8e-29 131.3 160 48.8
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 1.2e-28 130.6 156 48.7
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 1.2e-28 130.6 176 44.9
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 1.5e-28 130.2 161 48.4
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.5e-28 130.2 160 48.1
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.5e-28 130.2 147 47.6
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 2.0e-28 129.8 165 46.7
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 2.6e-28 129.4 156 48.7
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 3.4e-28 129.0 165 46.1
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 3.4e-28 129.0 165 46.1
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 4.4e-28 128.6 160 48.1
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 4.4e-28 128.6 160 46.2
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 5.8e-28 128.3 160 46.9
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 7.5e-28 127.9 162 46.9
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 9.8e-28 127.5 156 46.8
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 1.7e-27 126.7 155 43.9
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.7e-27 126.7 160 48.8
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 1.7e-27 126.7 158 44.9
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 2.2e-27 126.3 153 44.4
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 2.2e-27 126.3 161 47.2
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 3.7e-27 125.6 156 48.7
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 3.7e-27 125.6 164 46.3
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 4.9e-27 125.2 156 48.7
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 6.4e-27 124.8 156 43.6
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 6.4e-27 124.8 158 46.8
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 1.1e-26 124.0 169 45.0
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.1e-26 124.0 170 45.3
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.9e-26 123.2 156 45.5
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 3.2e-26 122.5 146 45.2
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 4.1e-26 122.1 161 44.7
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 5.4e-26 121.7 177 43.5
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 5.4e-26 121.7 146 49.3
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.0e-25 119.8 152 42.8
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.7e-24 116.7 105 59.0
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 3.0e-24 115.9 156 46.2
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 3.0e-24 115.9 177 40.7
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 6.6e-24 114.8 105 58.1
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 8.6e-24 114.4 159 45.3
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 8.6e-24 114.4 173 40.5
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 8.6e-24 114.4 165 43.6
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 1.1e-23 114.0 162 46.3
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 1.1e-23 114.0 158 45.6
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 1.1e-23 114.0 158 45.6
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 1.1e-23 114.0 162 46.3
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 1.1e-23 114.0 161 39.8
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 1.5e-23 113.6 160 45.0
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 1.9e-23 113.2 110 54.5
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 3.3e-23 112.5 156 44.9
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 5.6e-23 111.7 156 44.2
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 7.3e-23 111.3 148 43.2
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 9.5e-23 110.9 155 44.5
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 9.5e-23 110.9 120 46.7
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.6e-22 110.2 163 40.5
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 2.1e-22 109.8 159 43.4
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 2.1e-22 109.8 166 41.0
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 2.1e-22 109.8 154 42.2
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 6.2e-22 108.2 168 39.9
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 8.0e-22 107.8 159 44.7
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 8.0e-22 107.8 69 72.5
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 1.8e-21 106.7 148 43.2
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 3.1e-21 105.9 105 51.4
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.2e-20 104.0 160 40.0
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 1.5e-20 103.6 161 43.5
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 5.8e-20 101.7 99 54.5
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 5.8e-20 101.7 157 42.7
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 5.8e-20 101.7 162 42.0
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 5.8e-20 101.7 162 42.0
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 7.5e-20 101.3 160 43.1
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 7.5e-20 101.3 142 40.1
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 9.8e-20 100.9 140 42.1
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 9.8e-20 100.9 108 48.1
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 2.2e-19 99.8 162 38.9
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 4.9e-19 98.6 167 38.3
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 4.9e-19 98.6 110 47.3
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.1e-18 97.4 137 42.3
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 4.1e-18 95.5 164 36.6
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 4.1e-18 95.5 164 40.2
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 4.1e-18 95.5 164 40.2
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 5.4e-18 95.1 148 41.2
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 5.4e-18 95.1 148 41.2
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 7.0e-18 94.7 159 40.3
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 7.0e-18 94.7 159 40.3
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 7.0e-18 94.7 159 40.3
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 1.2e-17 94.0 108 47.2
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.7e-17 92.8 164 36.0
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 2.7e-17 92.8 164 36.0
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 3.5e-17 92.4 66 65.2
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 3.5e-17 92.4 164 36.0
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 3.0e-16 89.4 121 46.3
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 5.1e-16 88.6 62 64.5
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 1.5e-15 87.0 164 34.1
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 1.9e-15 86.7 144 39.6
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 1.9e-15 86.7 132 37.9
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.6e-14 83.6 110 44.5
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 2.1e-14 83.2 148 37.2
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 2.1e-14 83.2 135 39.3
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 6.2e-14 81.6 149 38.9
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.1e-13 80.9 165 38.8
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 1.1e-13 80.9 140 36.4
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.4e-13 80.5 52 71.2
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.5e-12 77.0 110 42.7
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 5.8e-12 75.1 48 70.8
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 1.3e-11 73.9 163 32.5
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 8.3e-11 71.2 161 34.2
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 8.3e-11 71.2 155 34.2
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.9e-10 70.1 167 33.5
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 9.2e-10 67.8 164 32.9
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 7.8e-09 64.7 43 67.4
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 2.3e-08 63.2 106 38.7
Hma1.2p1_0549F.1_g176960 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 4.3e-07 58.9 40 70.0
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 7.3e-07 58.2 69 44.9


User provided reference genes

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